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3148 Commits

Author SHA1 Message Date
James Agnew
2badae2097
Avoid contained resource in conditional create (#2665) 
* Work on unexpected contained resources

* Avoid contained on conditional create

* Add changelog
 2021-05-19 07:49:59 -04:00
jamesagnew
b463b072c8 Test fixes 2021-05-18 21:32:13 -04:00
jamesagnew
de56f440cb Version bump 2021-05-18 17:14:14 -04:00
jamesagnew
e02bfca610 Add logging 2021-05-18 12:33:02 -04:00
Tadgh
9d039e095b Fix copy paste error. shame. 2021-05-18 11:12:59 -04:00
Tadgh
5b6f76e2dc Address review comments 2021-05-18 11:05:56 -04:00
Tadgh
143474225e Add test. Add fix 2021-05-18 09:58:58 -04:00
jamesagnew
c725d1453f Add logs 2021-05-18 09:22:29 -04:00
jamesagnew
926bf393d3 Merge branch 'rel_5_4' 2021-05-17 09:10:58 -04:00
James Agnew
40ecafcd31
Don't unescape plus in match URLs (#2658) 
* Don't unescape plus in match URLs

* Perf improvements

* Add changelog

* Test fix

* Work on tests

* Fixes

* Test fix
 2021-05-16 21:51:23 -04:00
Tadgh
57bb11797e fix 2021-05-13 15:46:26 -04:00
Tadgh
15ea4fb555 Tidy test 2021-05-13 10:47:26 -04:00
Tadgh
3428d71023 Add toggle. Add test. Add changelog. add docs 2021-05-13 10:29:07 -04:00
Ken Stevens
316e7e0d6d
Ks 20210512 value set expansion id (#2654) 
* tested and fixed

* changelog
 2021-05-12 21:38:29 -04:00
James Agnew
b64346ba1e
Add shcheduled task enablement config (#2652) 
* Add shcheduled task enablement config

* Add changelog

* Test fix

* Cleanup
 2021-05-12 14:38:30 -04:00
Tadgh
d6252526c3 Move member variable 2021-05-11 10:53:10 -04:00
jamesagnew
31ef476efe Test fix 2021-05-11 10:12:27 -04:00
jamesagnew
e9ff2fd3ae Test fix 2021-05-11 09:26:23 -04:00
James Agnew
3015438a0c
Avoid query cache poisoning (#2647) 
* Avoid query cache poisoning

* Test fixes

* Add changelog
 2021-05-11 08:39:38 -04:00
James Agnew
43631d4937
Account for NOPs in Auto-Versioned References (#2643) 
* Account for NOPs in auto-versioned references

* Add docs

* Add tests
 2021-05-08 18:09:50 -04:00
James Agnew
5a9f499fbf
Resolve weakness in history operation (#2642) 
* Address DOS issue in History operation

* Work on history caching

* Add docs

* Add changelog

* Resolve test failures

* Test fixes

* Test fix

* Test fixes
 2021-05-07 12:04:59 -04:00
Tadgh
cf864c2078 Merge remote-tracking branch 'origin/master' into issue-2634-increase-src-path-length 2021-05-06 09:10:48 -04:00
James Agnew
1424d48912
Avoid NPE in concept mapping (#2637) 2021-05-06 05:25:38 -04:00
Ken Stevens
a4856bba17
fix iBundleProvider.getResources(from,to) throwing a NPE (#2632) 
* fix iBundleProvider.getResources(from,to) throwing a NPE

* change log

* review feedback

* rename test to IT that has concurrency failures
 2021-05-05 21:50:51 -04:00
Tadgh
4031968357
Calls with zero request details and non-partitionable resource automatically go to default now. This updates the test to pass in servletrequest details, simulating a user request (#2636) 2021-05-05 16:57:12 -04:00
Tadgh
bf37d1db74 Fix test 2021-05-05 15:36:20 -04:00
Tadgh
e15825b336 Increase length, add test 2021-05-05 15:29:02 -04:00
Tadgh
0fb0419a67 If null, return default partition during create 2021-05-04 16:22:01 -04:00
Tadgh
fcc662da79 Fix not sending request details 2021-05-04 16:18:34 -04:00
KevinIsAProgrammer
75c74a22db
Merge pull request #2619 from hapifhir/2590_preserve_the_ID_value_of_the_resources_in_the_package_loader 
2590 preserve the id value of the resources in the package loader
 2021-05-03 15:39:14 -04:00
Kevin Hartmann
320e8379b3 Now convert pure numeric ids to "npm-<id>". 2021-05-03 12:55:17 -04:00
James Agnew
172ea770b8
Fix transaction references (#2627) 2021-05-03 12:25:51 -04:00
jamesagnew
8be50641e5 License header 2021-05-03 08:45:54 -04:00
Hanan Awwad
871914bd3b
Concept properties are not being saved while using the operation apply-codesystem-delta-add (#2577) 
* fix issue #2280

* revert the indentation back.

* revert-back untouched changes.

* saving concept properties using the operation apply-codesystem-delta-add

* fix test cases; add check for null properties

* fix test; expected file descriptors
 2021-05-03 08:02:20 -04:00
Jari Maijenburg
6dc12603bb
Fixed GraphQL token parameter matching bug (#2623) 2021-05-02 17:18:51 -04:00
James Agnew
0cea403800
Fix vulnerability warning on maven plugin (#2621) 
* Fix vulnerability warning on maven plugin

* Compile fixes

* Fix bootstrap dep

* Test fix

* Fix tests

* FIx deps
 2021-05-02 12:14:32 -04:00
James Agnew
970a9884f0
Avoid tag definition constraint (#2620) 
* Avoid tag definition constraint failure

* Version bumps

* Add changelog

* Avoid guava issue

* Test fix

* Test fix

* Bump pom
 2021-05-01 17:16:15 -04:00
Tuomo Ala-Vannesluoma
fbca9f8060
Offset query fixes (#2579) 
* Fix new searchbuilder limit similar to legacy searchbuilder

* Fix returning includes when using offset query

* Add unit tests for offset query with include

* Only use count param if offset is given (sometimes we want to search synchronously more if DAO is used directly)

* Throw if offset is tried to use with everything operations

* Do not offer offset paging for everything operations and fix tests to assert that
 2021-04-30 19:01:27 -04:00
Kevin Hartmann
e8ac24b4df Test now passes. 2021-04-30 15:17:22 -04:00
Kevin Hartmann
b3afe41de8 Added test to make sure we have loaded the expected package id. 2021-04-30 15:14:19 -04:00
Tadgh
983d811af6
Merge pull request #2587 from hapifhir/issue-2585-enhance-placeholder-targets-logic 
Issue 2585 enhance placeholder targets logic
 2021-04-30 12:55:27 -04:00
Tadgh
ac7c684437 Refactor to support all new tests 2021-04-29 17:01:19 -04:00
Tadgh
78271a2931 Create tests for all possiblye use cases 2021-04-29 15:25:11 -04:00
Kevin Dougan SmileCDR
646faa10e1
2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.10 (#2545) 
* 2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.9.

* 2540 - Updated the Unit Test messages due to the upgraded dependencies.

* 2540 - Fixed some additional Unit Test message checks.

* 2540 - Updated the POM to refer to fhir_core_version 5.3.10-SNAPSHOT so a FULL Pipeline Build can run to verify that everything is fixed now.

* 2540 - Added some DEBUG Sysout logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Added some more logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Updated a Unit Test to account for a newly returned search param.

* 2540 - Updated a Unit Test to account for a newly returned search param and removed some debug output.
 2021-04-29 15:00:37 -04:00
Tadgh
3ff2ad37ff Start with failing test 2021-04-29 14:08:50 -04:00
James Agnew
95d7ba6fa8
Streamline Search SQLs (#2576) 
* Streamline SQL queries

* SQL query tidying

* Add changelog

* Test fixes

* Tests passing

* Ongoing work

* Test fixes

* Test fixes

* Build fix

* Cleanup

* Fixes
 2021-04-28 10:29:09 -04:00
Tadgh
9ecb390dae Move tests to proper class. Fix issue with version referencing 2021-04-26 13:40:11 -04:00
Tadgh
b200c10ced Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-26 09:48:30 -04:00
James Agnew
2ba1005762
OpenAPI Support (#2560) 
* Start work on OpenAPI

* Fixes

* Work on OpenAPI

* Cleanup

* Cleanup

* More swagger work

* Build fix

* More work

* More work

* Add documentation

* Docs fixes

* Add changelog

* License updates

* Add API

* Cleanup

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_plain/openapi.md

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>

* Work on scripts

* Add docs

* Compile fix

* Work on fixes

* Fix tests

* Test fix

* Test fix

* Build fix

* Tests

* Build fix

* Work on pipeline

* Version bump

* Test fix

* Version bump

* Test fix attempts

* Test fix

* Test fix

* Remove accidentally committed files

* Fixes

* Tets fixes

* Test fix

* Test fix

* Test fix

* Test fixes

* Test fixes

* Test fixes

* License header updates

* test fix

* Test fixes

* Test fix

* Test fixes

* Test fix

* Checkstyle bump

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>
 2021-04-25 15:40:50 -04:00
Tadgh
b7166735f9 Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-21 12:13:54 -04:00