James Agnew
cddaf058a2
Add some extra test logging
2019-09-25 15:27:17 -04:00
Diederik Muylwyk
30588bf8ee
Completed fixing tests after enabling pre-expansion by default.
2019-09-25 14:29:50 -04:00
jamesagnew
b2c13f3018
Work on codecov integration
2019-09-25 13:25:59 -04:00
Diederik Muylwyk
6b22d705c7
Incremental progress fixing tests after enabling pre-expansion by default.
2019-09-25 13:24:50 -04:00
jamesagnew
2efef13528
Another test fix
2019-09-25 05:43:58 -04:00
jamesagnew
4c064186a9
Try to fix intermittent testfailure
2019-09-25 05:39:00 -04:00
Diederik Muylwyk
799848291f
Merging master into working branch.
2019-09-24 16:47:19 -04:00
Diederik Muylwyk
5743efa066
Minor tweak to test.
2019-09-24 16:46:05 -04:00
James Agnew
21b91ac0e7
Make sure we call the updateEntity method on the correct DAO type when
...
processing inside a transaction
2019-09-24 16:16:13 -04:00
Diederik Muylwyk
bf5d6acef4
More troubleshooting.
2019-09-24 15:36:06 -04:00
Diederik Muylwyk
46a6b7aaef
Troubleshooting lack of ValueSet pre-expansion when updating a ValueSet via transaction bundle.
2019-09-24 15:30:40 -04:00
James Agnew
bd763d728b
Merge branch 'master' into ks-source-request-id-append-bug
2019-09-24 14:49:39 -04:00
James Agnew
5f563057c0
Set up CI with Azure Pipelines ( #1502 )
...
* Set up CI with Azure Pipelines
[skip ci]
* Update azure-pipelines.yml for Azure Pipelines
* Skip tests for a build
* Work on pipeline
* Update azure-pipelines.yml for Azure Pipelines
* Interceptors docs
* Test fix
* Disable releases from snapshot repo
* Try disabling jitpack
* Fix dependency issue
* A couple of test fixes
* Change to trigger a build
* Force a change to trigger a build
* Force a build
* FIx test
2019-09-24 14:38:38 -04:00
Ken Stevens
0e90867a65
fixed meta.source request append bug
2019-09-24 14:35:34 -04:00
James Agnew
9b2826f3c6
Handle searches with chained slash value ( #1503 )
...
* Work on test case for bug with searches
* Work on tests
* Fix issue with slashes in reference chain parameter for JPA server
2019-09-24 14:31:05 -04:00
Diederik Muylwyk
df4b6c798c
Modified LOINC Terms to RadLex RPIDs ID and URL; pattern is mappings of main LOINC terms to say 'loinc' but parts and other codes are specified.
2019-09-24 09:21:42 -04:00
Diederik Muylwyk
2a2e8e0ab8
Merge pull request #1501 from jamesagnew/1483-need-consistent-assignment-of-fullurl-id-and-url-for-loinc
...
Fixed inconsistent IDs and URLs for LOINC.
2019-09-23 15:59:21 -04:00
James Agnew
6f44d7c360
Fix issue deleting CodeSystem resources ( #1316 )
...
* Fix deleting CodeSystem resources
* Test fixes
* Address review comments
2019-09-23 15:58:57 -04:00
James Agnew
004f42cdcc
Clean up docs
2019-09-23 15:56:02 -04:00
Diederik Muylwyk
59d7ccb99e
Fixed inconsistent IDs and URLs for LOING.
2019-09-23 15:49:58 -04:00
Diederik Muylwyk
56e2904029
Removing my name. Whoops!
2019-09-20 18:48:47 -04:00
Diederik Muylwyk
0cc35699b8
Specify full path for LOINC filenames to avoid duplicates.
2019-09-20 18:43:38 -04:00
Diederik Muylwyk
e1e8ec981b
Replaced migration task column length constants with literals because they are not necessarily constant across schema versions.
2019-09-20 12:31:54 -04:00
jamesagnew
6475146bc9
Add license headers
2019-09-19 18:08:21 -04:00
James Agnew
eddb98084d
Move PreferReturnEnum back to original location to avoid regressions
2019-09-19 15:48:58 -04:00
James Agnew
6fde2879ef
Fix one more intermittent test
2019-09-19 14:53:29 -04:00
James Agnew
47805bceff
Test fixes
2019-09-19 14:42:27 -04:00
James Agnew
a5a0fca065
Test fixes
2019-09-19 11:33:33 -04:00
James Agnew
2be63a1650
Test fixes
2019-09-19 09:45:07 -04:00
jamesagnew
170698562a
Bump to current org.hl7.fhir.core
2019-09-19 08:11:30 -04:00
James Agnew
30dfde645b
Upgrade to Fontawesdome 5 and prevent uploading resources with binary
...
storage extensions
2019-09-19 05:28:05 -04:00
James Agnew
6b21e8cd90
Add some testing to the bulk export service
2019-09-18 14:43:00 -04:00
James Agnew
4a751cbfc5
Integrate Bulk Export ( #1487 )
...
* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
James Agnew
882e0853df
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-16 15:55:49 -04:00
James Agnew
38cf830384
Accurately reflect codesystem URL
2019-09-16 15:55:32 -04:00
Diederik Muylwyk
3a9342913c
Address review comments. Added tests.
2019-09-16 11:54:34 -04:00
Diederik Muylwyk
b05c5f3f71
Implement the parent and child filters for LOINC. #1453
2019-09-15 21:52:33 -04:00
Diederik Muylwyk
9b1af6b207
Implement both a copyright property and a copyright filter for LOINC. #1451
2019-09-13 16:18:51 -04:00
Diederik Muylwyk
678d58ab90
Only manually add EXTERNAL_COPYRIGHT_NOTICE to LOINC uploader if it doesn't already exist in loinc.xml
2019-09-13 11:57:19 -04:00
Diederik Muylwyk
75ddba7f2d
Add EXTERNAL_COPYRIGHT_NOTICE property for LOINC uploader.
2019-09-13 11:49:01 -04:00
Diederik Muylwyk
7dce29b86e
Merge pull request #1468 from jamesagnew/dm-more-performance-tuning-on-valueset-expansion
...
More performance tuning on ValueSet expansion.
2019-09-10 17:57:13 -04:00
Diederik Muylwyk
65e029458c
Test fixes.
2019-09-10 17:50:49 -04:00
Diederik Muylwyk
d4feb5d0b1
Final cleanup before review.
2019-09-10 14:21:42 -04:00
James Agnew
9420bca341
Merge branch 'master' into ks-in-memory-date-compare
2019-09-10 13:25:29 -04:00
Diederik Muylwyk
57d4cc23ee
More bug-hunting. DSTU3 was missing a null check.
2019-09-10 11:56:07 -04:00
James Agnew
0843a2b02d
Avoid leaking details when canSeeReource rejects a resource from consent
...
service
2019-09-10 11:14:44 -04:00
Ken Stevens
c974e9283b
added search % now test
2019-09-10 10:11:09 -04:00
Diederik Muylwyk
67d24eedff
Merging master into working branch.
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/TermValueSetConceptDesignation.java
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2019-09-09 19:01:29 -04:00
Diederik Muylwyk
dbe5a36f26
Reset schedule for pre-expansions. Ready for review.
2019-09-09 18:44:25 -04:00
Diederik Muylwyk
7e76c1893f
Fixed bug for large ValueSet expansion with URL parameter; return 404 for unknown ValueSets.
2019-09-09 18:41:00 -04:00
James Agnew
2052df3152
Error with a 404 on invalid valueset
2019-09-09 18:01:41 -04:00
Diederik Muylwyk
19676a01b7
Incremental progress on large ValueSet expansion with URL parameter.
2019-09-09 17:24:01 -04:00
Diederik Muylwyk
c82c3a093f
Removing gaps from concept order when pre-expanding ValueSets.
2019-09-09 15:24:37 -04:00
jamesagnew
95e75d0a7d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-09 15:02:55 -04:00
Diederik Muylwyk
4fc0ad6f0a
Cleanup following paired programming with JA.
2019-09-06 17:56:56 -04:00
James Agnew
6ec991cd39
Finally this is fast!
2019-09-06 16:29:09 -04:00
James Agnew
718fcb28a5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-06 14:58:03 -04:00
Diederik Muylwyk
0cabc0392f
Incremental progress on large ValueSet expansion.
2019-09-06 14:57:34 -04:00
James Agnew
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
jamesagnew
362c658f9a
License headers
2019-09-06 10:23:36 -04:00
Ken Stevens
c88e6a6fa7
Merge pull request #1442 from jamesagnew/ja_20190822_1440_infinispan_query_cache
...
Externalize query cache into its own service
2019-09-06 08:28:12 -04:00
James Agnew
785d40a777
Accuont for a few schema changes
2019-09-05 21:29:47 -04:00
Ken Stevens
b1421b1d60
@NotNull (hope I picked the right one!)
2019-09-05 16:20:24 -04:00
Ken Stevens
2a08808935
final PR cleanup
2019-09-05 16:11:58 -04:00
Diederik Muylwyk
6fa9658b24
Incremental progress on large ValueSet expansion.
2019-09-05 15:54:45 -04:00
Diederik Muylwyk
655222fcac
Merging master into working branch.
2019-09-05 11:59:44 -04:00
Diederik Muylwyk
91cfecd257
Incremental progress on large ValueSet expansion.
2019-09-05 11:43:31 -04:00
Ken Stevens
01015bc435
added list stresstest
2019-09-04 21:15:08 -04:00
Ken Stevens
1f60d85517
Merge branch 'ks-anylist-enhancement' into ja_20190822_1440_infinispan_query_cache
2019-09-04 13:31:19 -04:00
Ken Stevens
fa62ab9c9e
Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
# src/changes/changes.xml
2019-09-04 13:31:00 -04:00
Ken Stevens
0a5c52122e
added list stresstest
2019-09-04 08:49:18 -04:00
Diederik Muylwyk
b00b1d2278
Toggle pre-expansion config.
2019-09-03 20:36:54 -04:00
Diederik Muylwyk
ea19b46f60
Added an indexed order column to TermValueSetConcept for improved fetching.
2019-09-03 20:36:16 -04:00
Diederik Muylwyk
aa9a984075
Don't trust stored total when determining whether or not to expand.
2019-09-03 18:44:52 -04:00
Diederik Muylwyk
358f649d1f
Minor tweaks following review.
2019-09-03 17:14:31 -04:00
Diederik Muylwyk
3e522a7414
Address review comments.
2019-09-03 16:37:28 -04:00
Diederik Muylwyk
6ebc9572ac
Adjust concept and designation totals as we process.
2019-09-03 16:23:20 -04:00
Diederik Muylwyk
b42b598d01
Added pre-fetch for concept designations, improved paging for expanded ValueSets, and columns on TermValueSet for number of concepts and designations.
2019-09-03 16:02:28 -04:00
jamesagnew
1ef70a0fca
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-03 07:02:09 -04:00
jamesagnew
8b09b3f3eb
Rename config enum for consistency
2019-09-03 07:01:36 -04:00
Diederik Muylwyk
02a896f31e
Fix NPE for ValueSet operation validate-code when Coding and/or CodeableConcept is null for DSTU3/R5.
2019-09-02 21:28:51 -04:00
Diederik Muylwyk
c34d8458ef
Refactor getting resource PIDs with utility methods.
2019-09-02 18:16:46 -04:00
Diederik Muylwyk
16963881b0
Reset pre-expansion schedule.
2019-08-30 19:36:34 -04:00
Diederik Muylwyk
548647defe
Toggle pre-expansion config.
2019-08-30 19:31:45 -04:00
Diederik Muylwyk
f29abd7167
Fixed ResourceTable lookups for pre-expansion and code validation.
2019-08-30 19:31:05 -04:00
Diederik Muylwyk
9f7cf3923b
Merge pull request #1458 from jamesagnew/1457-valueset-pre-expansion-need-to-account-for-existing-valuesets-and-user-assigned-ids
...
Resolve "ValueSet pre-expansion - need to account for existing ValueSets and user-assigned IDs."
2019-08-30 10:48:39 -04:00
Diederik Muylwyk
8ef9c61b83
Address review comments; improve logging.
2019-08-30 10:47:21 -04:00
James Agnew
8700088c67
Missed a keyword
2019-08-29 22:06:43 -04:00
James Agnew
668af76514
Make method static again
2019-08-29 22:03:58 -04:00
James Agnew
347aada62e
Add a setter for unit tests
2019-08-29 21:43:29 -04:00
James Agnew
dbe86c8669
One more test fix
2019-08-29 21:35:07 -04:00
James Agnew
1b1d80b850
Test fix
2019-08-29 21:02:19 -04:00
Diederik Muylwyk
e03d6a5d47
Fixed handling of pre-expansion in light of pre-existing, non-pre-expanded ValueSets.
2019-08-29 18:09:30 -04:00
James Agnew
c5a88444b6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-08-29 14:00:37 -04:00
James Agnew
956bb39327
Resolve an inefficient regex expression
2019-08-29 13:59:31 -04:00
Diederik Muylwyk
c22bf8b09f
Fixed handling of client-assigned IDs throughout terminology services.
2019-08-29 10:48:54 -04:00
Diederik Muylwyk
e67a750c4f
validate-code operation now works with client-assigned IDs; added a bunch of failing tests to work on tomorrow.
2019-08-28 18:49:18 -04:00
Ken Stevens
d2ae3c24a1
FIXME
2019-08-28 16:26:56 -04:00
Ken Stevens
3e58962ac1
Split search cache api from search result cache api.
2019-08-28 16:24:56 -04:00
Ken Stevens
eab589bcac
fixed intermittently failing test
2019-08-28 13:11:44 -04:00
Ken Stevens
259426b0dd
Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
# src/changes/changes.xml
2019-08-28 10:37:17 -04:00
Diederik Muylwyk
9ef0519b4c
validate-code operation has been optimized for large ValueSets; submitting pull request.
2019-08-27 21:15:12 -04:00
Diederik Muylwyk
6b0084fc3b
Merge pull request #1448 from jamesagnew/1447-loinc-filenames-should-be-configurable
...
Resolve "LOINC filenames should be configurable."
2019-08-27 13:47:40 -04:00
Diederik Muylwyk
94c7fc49fd
Making LOINC filenames configurable; fix implicit ValueSet URL for loinc-all.
2019-08-27 13:46:42 -04:00
Diederik Muylwyk
1adfda44d9
Making LOINC filenames configurable; ready for review.
2019-08-27 11:19:01 -04:00
James Agnew
70d0a8aa8f
Get patch working ( #1449 )
2019-08-27 05:42:15 -04:00
Diederik Muylwyk
f4789247b2
Making LOINC filenames configurable; fix IEEE medical device code property key.
2019-08-26 18:46:57 -04:00
Diederik Muylwyk
0765254024
Making LOINC filenames configurable; initial commit.
2019-08-26 18:32:21 -04:00
Diederik Muylwyk
0ee15874ca
loinc-all ValueSet is now created automatically when loading LOINC terminology.
2019-08-26 16:42:37 -04:00
Diederik Muylwyk
073d2a45a4
Multiaxial hierarchy support is implemented; we not populated parent and child properties.
2019-08-26 14:26:38 -04:00
Ken Stevens
17f58a61c3
Revert "add accessor to search hash"
...
This reverts commit 2dc70c92
2019-08-24 14:13:06 -04:00
Ken Stevens
2dc70c92f1
add accessor to search hash
2019-08-24 14:10:17 -04:00
Diederik Muylwyk
b41926307c
Completed work on large ValueSet expansion support; ready for review.
2019-08-23 17:40:45 -04:00
James Agnew
10958a8e4d
I think this might work now..
2019-08-23 12:22:27 -04:00
James Agnew
c564052b15
One more test fix
2019-08-23 11:46:56 -04:00
Diederik Muylwyk
890555a77d
Incremental work on large ValueSet expansion support; transaction boundaries need to be broken up.
2019-08-23 11:46:32 -04:00
James Agnew
c346ba92c8
Revert accidental commit
2019-08-23 11:17:02 -04:00
James Agnew
abc894ce90
A few refactors based on ken's suggestions
2019-08-23 10:57:58 -04:00
James Agnew
6fa27934a8
Tests all seem to be working
2019-08-23 10:14:13 -04:00
Diederik Muylwyk
97a235ddfc
Merging master into working branch.
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
2019-08-22 14:02:56 -04:00
Diederik Muylwyk
72dd6b2922
Incremental work on large ValueSet expansion support; fixed broken deletion for TermValueSetConceptDesignation.
2019-08-22 14:00:08 -04:00
James Agnew
4afa55ea26
Initial commit - Not yet compiling
2019-08-22 08:49:34 -04:00
Ken Stevens
37c1ba44fe
Merge remote-tracking branch 'remotes/origin/master' into ks-awaitility-version-bump
2019-08-21 15:04:16 -04:00
James Agnew
9428430822
Add support for Resource.meta.source ( #1438 )
...
* Work on indexing source
* Work on tests
* Refactor query count tests
* Unit test fixes
* Add some tests
* DAO fix
* Fix compile error
* Unit test fix
* Cleanup
* Test fix
* Fix compile error
* One more test fix
2019-08-21 11:17:43 -04:00
Diederik Muylwyk
3218bd7853
Incremental work on large ValueSet expansion support; implemented paging when reading concepts from the terminology tables. Switched from Derby to H2.
2019-08-20 18:11:53 -04:00
Ken Stevens
5703b55e88
Merge remote-tracking branch 'remotes/origin/master' into ks-awaitility-version-bump
2019-08-20 15:08:25 -04:00
Ken Stevens
df7469731b
turn of sql queries
2019-08-20 15:02:02 -04:00
James Agnew
ce44115152
Handle cascading deletes correctly with circular references ( #1435 )
...
* Handle cascading deletes correctly with circular references
* A bit of cleanup
* Address review comments
* FIx some javadocs
* Fix an incorrect message
2019-08-20 10:08:34 -04:00
Ken Stevens
daf45db2be
fixed a test and removed awaitility excludes
...
mvn install completed successfully
2019-08-20 09:14:21 -04:00
Diederik Muylwyk
70aef7fbbb
Incremental work on large ValueSet expansion support; need pageable results while querying TRM_VALUESET_CONCEPT.
2019-08-19 18:43:43 -04:00
Diederik Muylwyk
53364a3af1
Downgraded FIXMEs to TODOs regarding -code for large ValueSets.
2019-08-19 02:50:01 -04:00
Diederik Muylwyk
8590e0ca4d
Merging master into working branch.
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
2019-08-19 02:28:30 -04:00
Diederik Muylwyk
dfd098c374
Incremental work on large ValueSet expansion support; added use of terminology tables when expanding.
2019-08-19 02:26:12 -04:00
jamesagnew
54657214de
FIx issue uploading US Core resources
2019-08-17 18:11:52 -04:00
jamesagnew
89aa37ea6a
Add a test
2019-08-17 15:16:11 -04:00
jamesagnew
81adc5c99e
Merge master
2019-08-17 14:31:30 -04:00
Ken Stevens
970c421311
allow urls in batch transactions to start with /
2019-08-17 14:31:30 -04:00
jamesagnew
f252cda126
Test fixes
2019-08-17 14:15:28 -04:00
James Agnew
74c83f6148
Test fixes
2019-08-17 12:01:04 -04:00
James Agnew
9e8af58e81
Fix reference params via filter
2019-08-16 14:56:36 -04:00
James Agnew
4490c9ca09
Correct the eq operator on the _filter parameter
2019-08-14 14:39:40 -04:00
Sean McIlvenna
b37c4b5ae7
Fixing broken unit tests
2019-08-14 14:35:18 -04:00
Sean McIlvenna
d92be90789
Changes to subscriptions to include the resource that triggered the subscription in the payload, serialized as JSON or XML depending on the Subscription.channel.payload property's value
2019-08-14 14:35:18 -04:00
jamesagnew
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
jamesagnew
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
James Agnew
b4fece0ae9
Add interceptor hook for graphql calls
2019-08-13 14:46:50 -04:00
jamesagnew
e2f0f4ed8b
License header updates
2019-08-13 05:28:35 -04:00
James Agnew
301a8f8432
Merge #1146 - Filter implementation ( #1220 )
...
* Initial commit of _filter keyword implementation.
* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.
* - Changes to support "ne" matching on resource ID for _filter
* Implemented language
* Commit/push before creation of pull request
* Ongoing merge work
* Ongoing merge work
* Merge master in
* Test fix
2019-08-12 11:59:33 -04:00
James Agnew
0c9e5ec1ea
Support GraphQL for R3/4/5 ( #1424 )
...
* Work on grpahql enhanbcements
* Add some more chars to the sanitizer function
* Add changelog
2019-08-12 08:24:32 -04:00
jamesagnew
2999a292e6
Get subscriptions working for R5
2019-08-11 18:32:47 -04:00
jamesagnew
d316ec1146
Fix NPE
2019-08-11 18:25:02 -04:00
James Agnew
2518d4e0be
Add some tests
2019-08-08 15:23:55 -04:00
jamesagnew
4e1bbe681a
Bump supported PGSQL driver
2019-08-08 15:12:29 -04:00
James Agnew
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
James Agnew
b0eb19cf2f
A few fixes resulting from the R5 merge
2019-08-06 17:55:51 -04:00
James Agnew
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
Diederik Muylwyk
8475aa4cc8
Add TRM_CODESYSTEM_VER.CS_DISPLAY to migration tool.
2019-08-01 14:44:03 -04:00
Diederik Muylwyk
d67de13708
Syncing master into working branch.
2019-08-01 13:51:26 -04:00
Diederik Muylwyk
78842164fd
Addressing review comments.
2019-08-01 13:37:46 -04:00
jamesagnew
46c8c61932
Restore build - May need to roll back the RDF changes
2019-08-01 10:14:56 -04:00
Diederik Muylwyk
ffda92514a
Incremental work on large ValueSet expansion support; still need to actually use the terminology tables when expanding.
2019-07-31 16:33:50 -04:00
Diederik Muylwyk
0e2dcce841
Incremental work on large ValueSet expansion support; still need to fix asynchronous tests and actually use the terminology tables when expanding.
2019-07-31 15:52:25 -04:00
James Agnew
3196bc370f
Add a default implementation to new terminology service loader method
2019-07-31 10:07:51 -04:00
James Agnew
b956b7552e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-30 17:52:47 -04:00
James Agnew
04ce9cfc1a
Add support for uploading custom terminology using the
...
$upload-external-code-system operation
2019-07-30 17:30:18 -04:00
Diederik Muylwyk
d1cba9f928
Syncing master into working branch.
2019-07-29 19:39:29 -04:00
jamesagnew
cf5201c67b
Add a constructor
2019-07-29 19:31:47 -04:00
Diederik Muylwyk
a8489f4331
Added TRM_VALUESET.EXPANSION_STATUS column, index, fields to entity, and migration tasks.
2019-07-29 19:30:46 -04:00
jamesagnew
a3cbdf0956
Make terminologyuploaderprovider not abstract
2019-07-29 19:02:51 -04:00
James Agnew
b030d1af31
Test fixes
2019-07-29 18:17:40 -04:00
James Agnew
a4ca5374ec
Add terminology delta operations ( #1401 )
...
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
Diederik Muylwyk
d03fc0f61d
Add null check for shortName before adding designation. ( #1396 )
2019-07-25 11:06:02 -04:00
Ken Stevens
a7817b07ca
Pre PR cleanup
2019-07-24 22:00:34 -04:00
Ken Stevens
a20b738161
Pre PR cleanup
2019-07-24 22:00:26 -04:00
Ken Stevens
84f5c7d467
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-24 21:54:05 -04:00
Ken Stevens
e05387da02
Recover from failed merge again. This time with feeling!
2019-07-24 13:46:20 -04:00
James Agnew
ddb8e385bf
Test fix
2019-07-24 13:24:48 -04:00
James Agnew
b78cd1e62e
Merge branch 'add-pid-to-created-resource'
2019-07-24 13:19:38 -04:00
James Agnew
e8cf2738f0
Handle oversized payload request
2019-07-24 13:18:30 -04:00
James Agnew
b9dbd69e5d
Fix limiting on size
2019-07-24 13:11:05 -04:00
Ken Stevens
37411a6ae2
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-24 10:41:11 -04:00
jamesagnew
6b599c29e5
Merge branch 'add-pid-to-created-resource'
2019-07-23 17:36:15 -04:00
James Agnew
bff39e4139
Try to deal with an intermittent failure
2019-07-23 15:58:14 -04:00
James Agnew
9094323c43
Add a test
2019-07-23 14:47:27 -04:00
James Agnew
b1e409519d
Add a test
2019-07-23 14:47:27 -04:00
Ken Stevens
8d86e34bcf
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
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# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ResourceExpungeService.java
2019-07-23 09:12:08 -04:00
jamesagnew
60ea922e8d
Add license headers
2019-07-23 05:38:10 -04:00
James Agnew
7e3d062d15
Switch default client to JSON ( #1392 )
...
* Start work on changing over
* Update tests
* More test fixes
* Work on generalizing binary access provider a bit
* Add expunge capability to binary storage, and also support actual binary
resources
* Work on binary provider
* Get the DB bound binary storage service working
* Test fixes
* Compile fix
* Fix compile error
* Test fix
* Test tweak
* Trying to figure out an intermittent failure
* Work on tests
* More work on tests
* Another test fix
2019-07-22 21:27:10 -04:00
Ken Stevens
7ba3ceec90
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-19 10:54:56 -04:00
James Agnew
458cfcfa12
Fix intermittent test failure
2019-07-19 10:46:49 -04:00
James Agnew
f53746cd63
One more set of migrator tweaks to account for latest changes
2019-07-19 10:10:00 -04:00
Ken Stevens
e634aa6d10
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-18 22:06:10 -04:00
James Agnew
5bf4fa22e7
Allow patching in tranactions
2019-07-18 16:41:07 -04:00
Ken Stevens
a7fa79331a
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-18 13:14:54 -04:00
James Agnew
87ab796309
Updates to validating interceptor
2019-07-18 12:57:30 -04:00
Ken Stevens
ffa008b2dd
Fixing a build error
2019-07-18 10:59:11 -04:00
Ken Stevens
72aa4932d6
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-18 10:12:15 -04:00
James Agnew
ee7cff9445
Rename a few columns to not conflict with res´rved words
2019-07-18 05:47:32 -04:00
jamesagnew
7488047686
Add license headers
2019-07-17 18:53:23 -04:00
James Agnew
55c0d5b604
Add binary storage for Attachments ( #1386 )
...
* Have this working now
* Add utility method
* Build fixes
* Add changelog
2019-07-17 18:31:17 -04:00