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Commit Graph

2276 Commits

Author SHA1 Message Date
David Maplesden
5120fe795e Dramatically improve the performance of containResourcesForEncoding 
We do this by avoiding the double processing of contained resources when
looking for resources to contain
 2019-09-19 20:38:30 -04:00
jamesagnew
6475146bc9 Add license headers 2019-09-19 18:08:21 -04:00
James Agnew
eddb98084d Move PreferReturnEnum back to original location to avoid regressions 2019-09-19 15:48:58 -04:00
James Agnew
2be63a1650 Test fixes 2019-09-19 09:45:07 -04:00
James Agnew
30dfde645b Upgrade to Fontawesdome 5 and prevent uploading resources with binary 
storage extensions
 2019-09-19 05:28:05 -04:00
James Agnew
6b21e8cd90 Add some testing to the bulk export service 2019-09-18 14:43:00 -04:00
James Agnew
4a751cbfc5
Integrate Bulk Export (#1487) 
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
 2019-09-17 16:01:35 -04:00
James Agnew
08835c1615 FIx a failure in FhirTerser when visiting custom types 2019-09-13 09:11:47 -04:00
Ken Stevens
abef4455eb done 2019-09-09 17:22:07 -04:00
Ken Stevens
7cfbf710fe Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare 
# Conflicts:
#	src/changes/changes.xml
 2019-09-09 14:46:25 -04:00
Ken Stevens
9e83f1d40a changelog 2019-09-09 14:22:42 -04:00
James Agnew
722c7a8211 Work on GraphQL updates 2019-09-06 14:56:17 -04:00
jamesagnew
1ef70a0fca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-03 07:02:09 -04:00
jamesagnew
8b09b3f3eb Rename config enum for consistency 2019-09-03 07:01:36 -04:00
Diederik Muylwyk
9f7cf3923b
Merge pull request #1458 from jamesagnew/1457-valueset-pre-expansion-need-to-account-for-existing-valuesets-and-user-assigned-ids 
Resolve "ValueSet pre-expansion - need to account for existing ValueSets and user-assigned IDs."
 2019-08-30 10:48:39 -04:00
Diederik Muylwyk
8ef9c61b83 Address review comments; improve logging. 2019-08-30 10:47:21 -04:00
Diederik Muylwyk
e03d6a5d47 Fixed handling of pre-expansion in light of pre-existing, non-pre-expanded ValueSets. 2019-08-29 18:09:30 -04:00
James Agnew
c5a88444b6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-08-29 14:00:37 -04:00
James Agnew
956bb39327 Resolve an inefficient regex expression 2019-08-29 13:59:31 -04:00
Diederik Muylwyk
b41926307c Completed work on large ValueSet expansion support; ready for review. 2019-08-23 17:40:45 -04:00
Diederik Muylwyk
890555a77d Incremental work on large ValueSet expansion support; transaction boundaries need to be broken up. 2019-08-23 11:46:32 -04:00
Diederik Muylwyk
97a235ddfc Merging master into working branch. 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
 2019-08-22 14:02:56 -04:00
James Agnew
9428430822
Add support for Resource.meta.source (#1438) 
* Work on indexing source

* Work on tests

* Refactor query count tests

* Unit test fixes

* Add some tests

* DAO fix

* Fix compile error

* Unit test fix

* Cleanup

* Test fix

* Fix compile error

* One more test fix
 2019-08-21 11:17:43 -04:00
James Agnew
ce44115152
Handle cascading deletes correctly with circular references (#1435) 
* Handle cascading deletes correctly with circular references

* A bit of cleanup

* Address review comments

* FIx some javadocs

* Fix an incorrect message
 2019-08-20 10:08:34 -04:00
Diederik Muylwyk
8590e0ca4d Merging master into working branch. 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
 2019-08-19 02:28:30 -04:00
Diederik Muylwyk
dfd098c374 Incremental work on large ValueSet expansion support; added use of terminology tables when expanding. 2019-08-19 02:26:12 -04:00
James Agnew
57c6064d89 Another test fix 2019-08-17 12:21:08 -04:00
James Agnew
74c83f6148 Test fixes 2019-08-17 12:01:04 -04:00
James Agnew
1e07fcd2b3
Fix an unintended regression in #1357 (#1429) 
* Start working on a tweak to #1357 - Not yet complete

* Tweaks to avoid an unintended regression from #1357
 2019-08-15 08:35:50 -04:00
Ken Stevens
f29c37a654 added IBaseReference constructor to TokenParam 2019-08-14 15:33:50 -04:00
jamesagnew
2d35db877e Add version constant 2019-08-14 15:03:05 -04:00
jamesagnew
e1b43d811f Version bump to 4.1.0-SNAPSHOT 2019-08-14 14:06:06 -04:00
jamesagnew
3f22456b0f Bump version to 4.0.0 2019-08-14 11:06:26 -04:00
James Agnew
b127867ef7 Fix responsehighlighterinterceptor to work with graphql 2019-08-13 18:00:30 -04:00
James Agnew
01a6aa8f5b Test fix 2019-08-13 14:54:35 -04:00
James Agnew
b4fece0ae9 Add interceptor hook for graphql calls 2019-08-13 14:46:50 -04:00
James Agnew
ef7182228f One more fix for #1399 2019-08-12 18:07:09 -04:00
James Agnew
c04f1d15d8 Fix #1399 - Issue with DiagnosticReport R4 narrative generation template 2019-08-12 17:17:45 -04:00
James Agnew
301a8f8432
Merge #1146 - Filter implementation (#1220) 
* Initial commit of _filter keyword implementation.

* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.

* - Changes to support "ne" matching on resource ID for _filter

* Implemented language

* Commit/push before creation of pull request

* Ongoing merge work

* Ongoing merge work

* Merge master in

* Test fix
 2019-08-12 11:59:33 -04:00
James Agnew
bfaf617142 Add some more chars to the sanitizer function 2019-08-12 08:16:38 -04:00
James Agnew
4f5a2b3c0c Add fhirType() to IBase to bring it in line with what the core structures do 2019-08-09 09:44:20 -04:00
jamesagnew
4e1bbe681a Bump supported PGSQL driver 2019-08-08 15:12:29 -04:00
James Agnew
dd0cb10dbb
validate operation ignores parameter profile (#1417) 
* This should be working now - need to check tests

* Add a changelog and some docs

* One more test fix

* Tests should be passing

* Fix compile

* Test fixes

* Ignore outdated DSTU2 validation test
 2019-08-07 15:31:59 -04:00
Ken Stevens
1b17097f62 a couple more int -> long 2019-08-07 13:35:27 -04:00
James Agnew
6aa7916ba7
Merge pull request #1415 from jamesagnew/ks-inmemory-id-match 
in-memory id match
 2019-08-07 08:31:38 -04:00
James Agnew
b0eb19cf2f A few fixes resulting from the R5 merge 2019-08-06 17:55:51 -04:00
James Agnew
60eab3ad70
Add support for R5 resources (#1416) 
* Work so far on R5 support

* Add support for R5

* Docs changes
 2019-08-06 17:30:31 -04:00
Ken Stevens
c11d719957 Fix bug when in-memory matcher compares long id to string id 2019-08-06 15:17:09 -04:00
Ken Stevens
48c8497086 Changed migration test from derby to h2 
Added a new test from 340 to latest version.
 2019-08-02 16:00:43 -04:00
jamesagnew
46c8c61932 Restore build - May need to roll back the RDF changes 2019-08-01 10:14:56 -04:00