48c10bddc5
Narrative Generator refactoring ( #1219 )
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* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
2019-02-27 14:59:57 -05:00
87ed00a002
Add ability to generate named parametrrs in a version independent way
2019-02-15 16:27:16 -05:00
10c348d44f
Tweak to elements parametr support
2019-02-14 19:30:10 -05:00
810f1ad969
Improvements to elements parameter as well as adding attributes to
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RequestDetails
2019-02-07 16:45:59 -05:00
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
9a8e3245b8
Build fixes
2019-02-05 15:00:36 -05:00
4498335ae5
Elements query cleanup
2019-02-05 14:16:47 -05:00
d4af1ee2a3
Add tests and license headers
2019-02-04 16:34:39 -05:00
e401ec86e4
Enhanced elements ( #1192 )
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Squashed merge: Add elements exclude mode
* Start working on elements enhancement
* Work on elements projection
* Work on elements filter
* Feature is now working
* Just some cleanup
* Address compile issues
2019-02-03 16:41:33 -05:00
b7ba529353
Merge pull request #1114 from zilin375/hapiFhir001
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Fix NPE
2019-02-02 11:31:43 -05:00
737ee9e97c
add JSON-like tests for DSTU3 and R4
2019-01-30 17:32:06 -08:00
68fae08f20
Fix casing in base64Binary type
2019-01-23 08:34:09 -05:00
9cf64f78d0
Deprecate a bad setter on RetfulServer, fix a paging issue, and add a
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disabled unit test to the subscription matcher
2019-01-21 14:46:17 -05:00
93bf2788ec
Add subscription narrowing interceptor and refactor RuleBuilder to be a
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bit cleaner
2019-01-12 14:23:26 -06:00
fc09ed6966
Fix #1163 - Correctly handle invalid CapabilityStatement
2019-01-11 08:01:48 -07:00
ee52d6fb31
Add SearchNarrowingInterceptor
2019-01-09 20:20:46 -06:00
b3c9b32db4
Credit for #1065 and forward-port fix to R4 provider
2019-01-09 07:19:55 -05:00
39f2062802
FIx errorprone detected issues
2019-01-05 13:43:55 -05:00
5b8fee869e
Add config options for default Prefer header and _total param on server
2019-01-04 16:12:45 -05:00
8c87c7c089
Correct an issue detected by ErrorProne
2019-01-04 14:28:38 -05:00
14a132a937
Squashed commit of the following:
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commit 965965583070da25b76f
2018-12-27 17:58:47 -05:00
6eb4c28e7c
More merging
2018-12-27 17:58:08 -05:00
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
6e0a9525a1
Remove dependency on public test server in unit test
2018-12-20 06:28:01 -05:00
19954fa252
Resolve failing test
2018-12-09 14:09:12 -05:00
b442982310
Add media interceptor
2018-12-08 18:49:58 -05:00
b41c222880
Require explicit declaration of authorizationinterceptor operation rules
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on whether the response is authorized or not
2018-11-23 14:25:46 -05:00
719339fc14
One more test fix
2018-11-19 10:27:16 -05:00
2e1d5e4124
Fix an occasional NPE in the tests
2018-11-19 09:56:40 -05:00
58388bb614
Allow client to return methodoutcome instead of resdource for operation
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call
2018-11-19 11:11:49 +01:00
67dbc802be
Better detection of binary content in ResponseHighlighterInterceptor
2018-11-18 14:32:54 +01:00
0d0f67b299
Add GraphQL support to public server
2018-11-16 11:41:39 +01:00
952dc7dd01
Fix NPE
2018-11-14 09:24:27 +01:00
cc57bacab8
Version bump to 3.7.0-SNAPSHOT
2018-11-12 10:07:28 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
b32e232eb2
A bit of client tweaking
2018-11-08 17:10:39 -05:00
01c7618867
Failing test cleanup
2018-11-08 15:46:49 -05:00
82ec721c99
Allow client defined parameter style for _format param
2018-11-08 15:27:35 -05:00
bbce2c69cf
Fix typo
2018-11-01 05:51:26 -04:00
6b1ea5b989
Add tests for operation method binding
2018-10-30 15:22:39 -04:00
b66e01ce65
Allow plain server @Operation methods to declare a wildcard so that any
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opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
aa177c1421
Authorize batch operation in AuthorizationInterceptor
2018-10-19 09:45:56 -04:00
c8db7fe035
Add a test
2018-10-18 15:12:22 -04:00
4e252063b8
Allow transactions and batches with transaction permission in
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AuthorizationInterceptor
2018-10-16 19:54:55 -04:00
b44e96a5cd
Merge branch 'philips-3.6.0'
2018-10-15 08:37:00 -04:00
51a69f0dc9
Fixes to migrator and count logic
2018-10-13 12:02:19 -04:00
90a3ead24f
Merge pull request #1089 from srdo/issue-545
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Issue-545: Base resource profile links should point to http://hl7.org …
2018-10-09 12:05:47 +02:00
c64567be68
More redundant test cleanup
2018-10-04 09:15:12 -04:00
597c8dbafe
Remove redundant tests
2018-10-04 08:57:37 -04:00
95f00e1c94
Fix NPE in tests
2018-10-04 08:33:40 -04:00
2050355e1e
Issue-545: Base resource profile links should point to http://hl7.org/fhir/StructureDefinition (invariant sdf-7 in spec)
2018-10-03 13:36:34 +02:00
12b23fbf23
Make JPA searches more efficient by prefetching a much smaller number of
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resources
2018-10-01 21:36:10 -04:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
002c4b3ff7
Add retrigger subscription operation
2018-09-27 20:03:01 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
ce6a9dbc36
Fix regression from new jetty version
2018-09-11 08:27:34 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
77305eb570
Work on migrator
2018-09-04 10:32:08 +08:00
f4a21eadda
Fix this issue
2018-09-01 14:38:52 +08:00
fee0166800
Work on removing validstion cache
2018-08-28 05:26:06 -04:00
54c07263b6
Increase code lengths
2018-08-26 12:32:35 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
bc1ee1f9dc
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-08-13 11:54:36 -04:00
78a7d64d2c
Merge pull request #1022 from alinleonard/master
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Patch operation on OperationsWhichAllowPreferHeader
2018-08-12 17:55:16 -04:00
4eb3281fa6
Merge branch 'client_enhancements'
2018-07-30 18:34:49 -04:00
4fcaf37729
Test cleanup
2018-07-30 18:34:28 -04:00
d6293cf9b3
Merge branch 'client_enhancements'
2018-07-30 09:42:38 -04:00
db0f082222
Merge pull request #996 from anamariaradu10/master
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Changes regarding behavior for Prefer header
2018-07-30 09:16:20 -04:00
0f1724ac0a
Credit and a unit test for #912
2018-07-30 05:48:38 -04:00
fc9f2ec0fb
FIx test issue
2018-07-29 18:20:09 -04:00
518092cbd4
More updates
2018-07-29 17:10:26 -04:00
3a5556006b
Merge branch 'master' into master
2018-07-27 16:59:52 +03:00
9c39733aff
Fixed issues
2018-07-27 16:48:44 +03:00
75a68a0332
Unit test fix
2018-07-26 18:58:23 +07:00
a4e4111376
Fix a unit test
2018-07-26 18:08:59 +07:00
3c80238f0e
Ongoing work on interceptors
2018-07-24 17:22:21 +07:00
23083a9283
Improvements to client and SP indexing in JPA server
2018-07-23 17:37:49 +09:00
b4aa4c0e89
Add protection against HTML injection attacks
2018-07-19 08:56:22 -04:00
a9291b4e4b
Add security test
2018-07-19 08:09:07 -04:00
e6ca408f67
Permissions for operations
2018-07-12 18:40:15 -04:00
03e7b018a6
Add skeleton for the $process-message operation in JPA erver
2018-07-12 17:52:24 -04:00
62c7c0fa55
fixed the AuthorizationInterceptorR4Test return code based on fhir doc
2018-07-09 16:43:31 +03:00
b929864873
Merge branch 'improve_jpa_indexes'
2018-07-01 12:08:03 -04:00
495fd9f68e
Add support for patch in AuthorizationInterceptor
2018-07-01 11:46:11 -04:00
e5cb609f4d
Performance improvements
2018-06-24 20:02:27 -04:00
e9fffd3cdc
Allow indexing in custom search params to descend into contained
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resources
2018-06-22 11:22:07 -04:00
ed0b5f54a5
More authorizationinterceptor tweaks for better security
2018-06-12 21:52:01 +08:00
cc0e836680
Auth interceptor early checks ( #995 )
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* Validator fix
* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.
* FIx DSTU2 test that wasn't updated
* More test fixes
2018-06-10 17:48:20 -04:00
6feb23896f
Hopefully fix #983
2018-06-06 15:51:23 -04:00
987679483a
Version bumps
2018-06-03 15:29:10 -04:00
9db3be8536
Include implementation URL in generated capabilitystatement
2018-06-03 14:22:15 -04:00
d127a89047
Some test fixes
2018-05-30 11:01:43 -04:00
a52805e504
Work on JDK9 support
2018-05-30 05:45:08 -04:00
7951d883d0
Merge branch 'master' into java9
2018-05-29 08:43:21 -04:00
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
27d0d4d7af
Fix build failure
2018-05-28 11:51:26 -04:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
67f21426cb
Disable content header on response for non-create operations
2018-05-25 07:28:01 -04:00
a3687e446e
Correctly handle missing search params with new indexing infrastructure
2018-05-23 11:42:38 -04:00
2f2900e837
Improve indexing on JPA server in anticipation of a new indexing
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strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
98d997c620
Add changelog and credit for #867
2018-05-23 06:21:00 -04:00
4d93b78c24
Credit for #836
2018-05-22 08:44:17 -04:00
07d0cc7876
Merge branch 'master' into bpCheckValFix
2018-05-17 09:53:41 +02:00
78f9d6333a
temp. fixed: "Attempt to read a single element when there is more than one present" #949
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Will be overwritten by next RI import!
2018-05-17 09:43:35 +02:00
730d02b7c6
added R4 core-extension validation support
2018-05-16 18:51:55 -04:00
d29a9a7f96
AutohrizationInterceptor should correctly recognize type-level operation
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invocations
2018-05-15 16:14:10 -04:00
4d62120a18
Fix issues reported by errorprone
2018-05-15 08:44:15 -04:00
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
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* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
3d762b984b
Sync to R4 definitions
2018-05-12 19:35:42 -04:00
b17eebd8d2
Squashed commit of the following:
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commit 2be11651c2b3bb5f9052f6b1082ba481a69c265f935938e92c43568a1f8de95894e6439393fb8f4f437f5051e420c51add4f7bf2b0a0e9adc73e75c9
2018-05-10 11:53:32 -04:00
7688be1231
Work on getting java9 building
2018-05-03 18:34:29 -04:00
593a705365
Performance enhancements on the CapabilityStatement generator for JPA
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server
2018-04-28 11:06:42 -04:00
09b1f547d0
Add expunge
2018-04-24 15:11:00 -04:00
07e7af746f
Work on expunge operation
2018-04-22 22:03:23 -04:00
a21d0a7752
Add auth tester methods
2018-04-22 19:30:09 -04:00
591539cf13
Add expunge method
2018-04-22 18:34:56 -04:00
8c889267e5
One more parser fix
2018-04-18 06:20:11 -04:00
162069776a
Correctly handle encoding contained resources where some have user
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assigned IDs and some do not
2018-04-17 18:26:06 -04:00
c5b286921e
Tests all passing
2018-03-30 15:18:57 -04:00
180336e076
Sync to master
2018-03-29 06:54:24 -04:00
53c2d8a38d
Merge branch 'master' into loinc_loader_update
2018-03-29 06:21:55 -04:00
418e82032f
Prep for 3.3.0
2018-03-29 05:48:13 -04:00
d9c167455e
Make sure we correctly clean up resources
2018-03-27 15:20:22 -04:00
b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi
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Implement #826 - add OSGI support and Apache Karaf features with inte…
2018-03-27 06:06:34 -04:00
29c09e40f0
Merge pull request #858 from patrick-werner/master
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added Test for #11 to Dstu3 and R4, fixed #853
2018-03-24 06:31:24 -04:00
308ac63a77
Merge branch 'master' into loinc_loader_update
2018-03-20 07:53:41 -04:00
6359f7f8a1
More work on loinc
2018-03-19 08:51:02 -04:00
ff04ab3358
${argLine} -> [at]{argLine}
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see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
0cee57392a
Merge remote-tracking branch 'upstream/master'
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# Conflicts:
# hapi-fhir-validation/src/test/java/org/hl7/fhir/r4/validation/FhirInstanceValidatorR4Test.java
2018-03-07 11:45:31 -03:00
e201091e3a
Update licenses for changed files
2018-03-04 13:53:04 -05:00
d22670ddb5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-04 12:21:07 -05:00
2f7751a079
Move stopwatch into hapi-fhir-base and add timing into to client
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LoggingInterceptor
2018-03-04 12:13:18 -05:00
8bdca012d6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-04 11:04:07 -05:00
07290ae8a0
Sync to latest R4 code
2018-03-04 11:02:47 -05:00
b2ceb87a70
Work on #873
2018-03-03 17:50:29 -05:00
0c0b9bd74b
Fix #814 - Don't create duplicate contained resources
2018-03-02 09:46:29 -05:00
66ebfa0ed3
Implement #826 - add OSGI support and Apache Karaf features with integration tests
2018-02-28 11:32:53 +01:00
458401864b
Handle deletes properly in HashMapResourceProvider
2018-02-25 14:20:04 -05:00
84c72203b7
Add HashMapResourcePrvider
2018-02-25 13:16:02 -05:00
a8f3c2efb6
added Test for #11 to Dstu3 and R4
2018-02-21 16:03:31 +01:00
84dcd51091
Add tests for #814
2018-02-12 09:25:59 -05:00
e4785b17b5
Add test
2018-02-08 17:50:45 -05:00
a395e48cd4
Don't crash when a multitenant server has a request for /
2018-02-04 18:44:37 -05:00
371be03b0f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-02 13:20:09 -05:00
0e2d55081f
Fix a crash when no count parameter supplied
2018-02-02 12:31:59 -05:00
351a2fc2f1
Fix #837 - Use non-legacy content-type for plain json and xml accept
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header
2018-02-02 06:43:19 -05:00
b61887e841
Improve performance of base64 validation
2018-01-30 17:37:12 -06:00
f7f69f6148
Ad some tests for #837
2018-01-26 08:39:46 -05:00
5750cfd03c
Prevent double calling server interceptor methods under certain
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conditions
2018-01-26 07:44:13 -05:00
James Agnew
bdenton
axdad
Patrick Werner
Stig Rohde Døssing
anamariaradu10
Ana Maria Radu
Alin
Diederik Muylwyk
jpoth