mirror of
https://github.com/hapifhir/hapi-fhir.git
synced 2025-02-17 18:35:50 +00:00
5 Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
TipzCM
|
ae3faafc9a
|
change search method for missing parameter names (#3982)
* handle changing in missing parameters * added changelog * refactor step1 * refactor step 2 * refactor step 3 * refactor step 3 * more code review fixes * tra lala * tra lala * blah * more changes * review fixes * review point * more review points * blah Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> |
||
Tadgh
|
6d9a19997f
|
Rel 6 1 1 mergeback (#4004)
* Bump for CVE (#3856) * Bump for CVE * Bump spring-data version * Fix compile * Cut over to spring bom * Bump to RC1 * remove RC * do not contrain reindex for common SP updates (#3876) * only fast-track jobs with exactly one chunk (#3879) * Fix illegalstateexception when an exception is thrown during stream response (#3882) * Finish up changelog, minor refactor * reset buffer only * Hack for some replacements * Failure handling * wip * Fixed the issue (#3845) * Fixed the issue * Changelog modification * Changelog modification * Implemented seventh character extended code and the corresponding dis… (#3709) * Implemented seventh character extended code and the corresponding display * Modifications * Changes on previous test according to modifications made in ICD10-CM XML file * Subscription sending delete events being skipped (#3888) * fixed bug and added test * refactor * Update for CVE (#3895) * updated pointcuts to work as intended (#3903) * updated pointcuts to work as intended * added changelog * review fixes Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * 3904 during $delete expunge job hibernate search indexed documents are left orphaned (#3905) * Add test and implementation * Add changelog * 3899 code in limits (#3901) * Add implementation, changelog, test * Update hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4Test.java Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> * 3884 overlapping searchparameter undetected rel 6 1 (#3909) * Applying all changes from previous dev branch to current one pointing to rel_6_1 * Fixing merge conflict related to Msg.code value. * Fixing Msg.code value. * Making checkstyle happy. * Making sure that all tests are passing. * Passing all tests after fixing Msg.code * Passing all tests. Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 3745 - fixed NPE for bundle with duplicate conditional create resourc… (#3746) * 3745 - fixed NPE for bundle with duplicate conditional create resources and a conditional delete * created unit test for skip of delete operation while processing duplicating create entries * moved unit test to FhirSystemDaoR4Test * 3379 mdm fixes (#3906) * added MdmLinkCreateSvcimplTest * fixed creating mdm-link not setting the resource type correctly * fixed a bug where ResourcePersistenceId was being duplicated instead of passed on * Update hapi-fhir-jpaserver-mdm/src/test/java/ca/uhn/fhir/jpa/mdm/svc/MdmLinkCreateSvcImplTest.java Change order of tests such that assertEquals takes expected value then actual value Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> * added changelog, also changed a setup function in test to beforeeach Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> * Fix to the issue (#3855) * Fix to the issue * Progress * fixed the issue * Addressing suggestions * add response status code to MethodOutcome * Addressing suggestions Co-authored-by: Ken Stevens <ken@smilecdr.com> * Fix for caching appearing broken in batch2 for bulkexport jobs (#3912) * Respect caching in bullk export, fix bug with completed date on empty jobs * add changelog * Add impl * Add breaking test * Complete failing test * more broken tests * Fix more tests' * Fix paging bug * Fix another brittle test * 3915 do not collapse rules with filters (#3916) * do not attempt to merge compartment permissions with filters * changelog * Rename to IT for concurrency problems Co-authored-by: Tadgh <garygrantgraham@gmail.com> * Version bump * fix $mdm-submit output (#3917) Co-authored-by: Ken Stevens <ken@smilecdr.com> * Gl3407 bundle offset size (#3918) * begin with failing test * fixed * change log * rollback default count change and corresponding comments Co-authored-by: Ken Stevens <ken@smilecdr.com> * Offset interceptor now only works for external calls * Initialize some beans (esp interceptors) later in the boot process so they don't slow down startup. * do not reindex searchparam jobs on startup * Fix oracle non-enterprise attempting online index add (#3925) * 3922 delete expunge large dataset (#3923) * lower batchsize of delete requests so that we do not get sql exceptions * blah * fix test * updated tests to not fail Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * add index * Fix up colun grab * Revert offset mode change * Revert fix for null/system request details checks for reindex purposes * Fix bug and add test for SP Validating Interceptor (#3930) * wip * Fix uptests * Fix index online test * Fix SP validating interceptor logic * Updating version to: 6.1.1 post release. * fix compile error * Deploy to sonatype (#3934) * adding sonatype profile to checkstyle module * adding sonatype profile to tinder module * adding sonatype profile to base pom * adding final deployToSonatype profile * wip * Revert version enum * Updating version to: 6.1.1 post release. * Add test, changelog, and implementation * Add backport info * Create failing test * Implemented the fix, fixed existing unit tests * added changelog * added test case for no filter, exclude 1 patient * wip * Add backport info * Add info of new version * Fix bad mergback * Added a couple of missing imports to a unit test. Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com> Co-authored-by: Qingyixia <106992634+Qingyixia@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: kateryna-mironova <107507153+kateryna-mironova@users.noreply.github.com> Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: markiantorno <markiantorno@gmail.com> Co-authored-by: Steven Li <steven@smilecdr.com> Co-authored-by: Kevin SmileCDR <kevinsmilecdr@Kevins-MacBook-Pro-2.local> |
||
jdar8
|
c647154777
|
Everything operation with type param code review fixes (#3926)
* check for valid resource type * add test and refactor test class * refactor auto get method name * introduce parameter object to patient everything methods * introduce parameter object to patient everything methods * change record to class * add hapi error code * refactor * refactor * change code num * refactor getmethodname to util method * add docs and rename fields to conform to fhir standard * typo * version bump * resolving merge conflicts. * Bumping version * Bumping version to 6.2.0-PRE5-SNAPSHOT * Encapsulating parameters in a PatientEverythingParameters object. Co-authored-by: Justin_Dar <justin.dar@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> |
||
Ken Stevens
|
100b8f9190
|
batch2 rework (#3964)
* consolidated Batch2Helper check status in assert before running maintenance ignore illegal job instance state transition * Fix mock tests * rename intermittent to IT * extra logging * into to debug * review feedback * added more logging * removed fasttracking. replaced with support for triggering a maintenance run * fixed tests * fixed tests * add asserts * licenses * snakeyaml cve version bump * data migration * merge origin/master * merge origin/master * fix test (support triggering jobs when scheduling is disabled) * add counter to abort potential infinite loop after 100000 calls * compile error * move multipartition mdm tests out to a separate IT update mongo job instance creation with new logic * fix race condition * back out infinite loop circuit breaker. it breaks terminology tests that depend on this loop running > 100000 times. * fix test (triggered job key was missing group) * revert saveAllDeferred * Almost finished getting JpaPersistenceR4IT to pass * testBulkExportDeleteForOnGoingJob still not passing * testBulkExportDeleteForOnGoingJob still not passing * Removed method `fetchInstanceAndMarkInProgress`. It was clobbering other state transitions like CANCELLED. * undo rename of cancelled to cancelRequested. Thymeleaf depends on the old name * ExpandResourcesStep requires a synchronous search * Tests are passing but man testBulkExportDeleteForOnGoingJob is a flakey test * fix test * fix test * change log * allow ERRORED -> FAILED state transition * add a timeout to saveAllDeferred() * improve error message on timeout message * fix tests * added more logging * added more logging * fix semaphore issue * Msg.code * fix test * javadoc * switch all batch loggers to batch troubleshooting log * add unit test, improve logging * move TimeoutManager to its own class. Add tests. * fix tests * comment cleanup * test race condition * review feedback Co-authored-by: Ken Stevens <ken@smilecdr.com> |
||
|
Ken Stevens
|
68c343902a
|
jpa test split (#3959)
* create fhir-version specific hapi-fhir-jpaserver-test projects * moved dstu2 tests out to dstu2 test project. * moved dstu2 tests out to dstu2 test project. * finished moving dstu2 tests out to dstu2 test project. * finished moving dstu2 tests out to dstu2 test project. * dstu3 test project compiles * start moving dstu3 resources * letting azure pileine know about the new modules * finished moving dstu3 resources. this might pass * OK this one should pass for sure * OK this one should pass for sure * change test poms to test scope * move the rest of R4 test classes * move the rest of R4 test classes * moar r4 moves * moar r4 moves * moar r4 moves * finished with r4 * finished with r4 * started r5 * started r5 * Cache busting based on source branch name * Fix other cache key * cache pegged to SHa1 * test cleanup Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: markiantorno <markiantorno@gmail.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com> |