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609 Commits

Author SHA1 Message Date
James Agnew ca2088f3ad
Add framework for Bulk Import (#2538) 
* Start work on bul;k import

* Work on bulk import

* Have batch working

* Working

* Working

* More work

* More work on bulk export

* Address fixmes

* License header updates

* Test fixes

* License header updates

* Test fix

* Test fix

* Version bumps

* Work on config

* Test cleanup

* One more version bump

* Version bump

* CLeanup

* A few additions

* Test fixes

* Test fix

* Test fix

* Migration fix

* Test fix

* Test fix
 2021-04-14 17:41:32 -04:00
Kevin Dougan SmileCDR 2ebc57b8a2
2548 - Add backport changelog Tag to backported fixes for #2533 and #2543. (#2549) 2021-04-14 13:33:07 -04:00
Ken Stevens 550602b2f1
added numeric matcher (#2547) 
* added numeric matcher

* changelog

* performance optimization

* fix test
 2021-04-14 13:15:30 -04:00
IanMMarshall 4cd0409bae
Merge pull request #2546 from hapifhir/2535_ignore_logical_structuredefinition_during_package_install 
2535 ignore logical structuredefinition during package install
 2021-04-14 10:54:37 -04:00
Kevin Dougan SmileCDR b45ddcc3da
2543 - Fix issue where versionned references are not being returned properly. (#2544) 
* 2543 - Fix issue where versionned references are not being returned properly.

* 2543 - Added changelog entries for this fix plus a previous fix for 2533.
 2021-04-14 08:45:49 -04:00
ianmarshall 0cb95ad556 Change package loader to not generate snapshot for logical StructureDefinition resources. 2021-04-13 22:30:22 -04:00
James Agnew bc4266d3d2
Improve narrative templates for custom structures (#2537) 
* Improve narrative templates for custom structures

* Add changelog

* Test fix
 2021-04-12 06:00:31 -04:00
Diederik Muylwyk 1bd585162d
Fix typo in docs. (#2536) 2021-04-09 18:50:12 -04:00
Tadgh 99e10de5fb
Merge pull request #2487 from hapifhir/mdm-expansion-interceptor 
MDM Expansion Interceptor (poc)
 2021-04-09 11:23:04 -04:00
Tadgh 82fc7b7457 Fix typo 2021-04-09 10:51:12 -04:00
Diederik Muylwyk 38436e5c1b
Fix a typo in docs. (#2532) 
* Fixed poorly formatted changelog entry.

* Fixed typo.
 2021-04-08 14:57:20 -04:00
Diederik Muylwyk ec7cc8fbaa
Fixed poorly formatted changelog entry. (#2531) 2021-04-08 14:07:16 -04:00
James Agnew f70648484a
Avoid a deadlock uploading terminology in postgres (#2529) 
* Fix #2493

* Try to fix intermittent test failure
 2021-04-08 12:28:42 -04:00
James Agnew 462d9bc6c4
Fix compartment defs for R5 (#2528) 
* Fix compartment defs for R5

* Add changelog

* Test fix
 2021-04-08 05:59:05 -04:00
James Agnew a6cbf7eebd
Add support for hierarchycal valueset expansion (#2525) 
* Add support for hierarchycal valueset expansion

* Add changelog

* Add tests

* Cleanup

* Test fix

* Test fixes
 2021-04-06 17:36:54 -04:00
James Agnew fcffb04c7b
Allow unknown code systems during validation (#2523) 
* Allow unknown code systems during validation

* Add changelog

* Test fix
 2021-04-05 20:59:59 -04:00
James Agnew b617c7690d
Search Parameter Infrastructure Cleanup (#2522) 
* Search param service cleanup

* Work on collapsing search param

* Search param cleanup

* Work on build

* Test fix

* Test fixes

* Ongoing work

* Test fix

* Compile fix

* Test fixes

* Test fix

* Test fix

* License header updates

* Remove fixme

* Cleanup

* Cleanup
 2021-04-05 17:40:10 -04:00
James Agnew 0bf746f23b
Add support for revincludes to CapabilityStatement generator (#2521) 
* Add support for revincludes to CapabilotyStatement generator

* Add changelog

* Fixes

* Test fix

* Test fixes

* Test fix

* Test fix

* More fixes to CS cache

* Test fix

* Test fix

* Test fix
 2021-04-05 08:29:04 -04:00
Tadgh 383c55e339 Add changelog 2021-04-01 11:33:45 -04:00
Tadgh 67fe940889 Update docs 2021-04-01 11:07:46 -04:00
Tadgh d8866ec75f Add doc caveats 2021-03-31 16:33:49 -04:00
Tadgh e5de34c51d Update docs 2021-03-31 16:08:09 -04:00
Tadgh f3c706d656 Add page for mdm expansion 2021-03-31 15:33:03 -04:00
Tadgh 696982ce1e Fix bean name. Update docs 2021-03-31 13:45:40 -04:00
Tadgh dbf050e32e pedantism sated 2021-03-31 10:14:18 -04:00
Tadgh aefe37aaf7 Add forgotten changelog 2021-03-31 09:59:06 -04:00
Tadgh 74be6761b1 Merge remote-tracking branch 'origin/master' into mdm-expansion-interceptor 2021-03-31 09:47:57 -04:00
Tadgh 8b69d161bd Update docs 2021-03-30 17:12:55 -04:00
jamesagnew 116bb12a58 Docs fix 2021-03-30 14:27:47 -04:00
James Agnew 049097e5b4
Improve CapabilityStatement Generation (#2511) 
* Start work

* Work on testing

* Version bump

* Test fix

* Compile fix

* Test Fixes

* Test fix

* Test fix

* Compile fix

* Tst fix

* Test fix

* Test fix

* Test fix
 2021-03-30 05:48:03 -04:00
Diederik Muylwyk b720c32c1d Version bump 2021-03-29 18:23:16 -04:00
Diederik Muylwyk bddd3f4c92 PointCutLatch now works with IPointcut instead of Pointcut 2021-03-29 18:20:33 -04:00
longma1 494c8e9593
Merge pull request #2483 from hapifhir/2478_add_extension_mdm_matcher 
2478 add extension mdm matcher
 2021-03-29 08:13:48 -06:00
jamesagnew 1576227fc8 Credit for #2194 2021-03-26 09:19:02 -04:00
Nick Goupinets 644885e91a Fixed typo in the docs 2021-03-25 18:32:08 -04:00
Nick Goupinets 05c3ca2512 Merge branch 'master' into 2478_add_extension_mdm_matcher 2021-03-25 12:22:23 -04:00
James Agnew 8352bc9c01
Correct the path to the select2 library in the testpage overlay (#2505) 
* Correct the path to the select2 library in the testpage overlay

* Add changelog
 2021-03-25 10:52:15 -04:00
long 6aab327612 modified documentation wording 2021-03-23 14:27:17 -06:00
Nick Goupinets de0399da23 Merge branch 'master' into 2478_add_extension_mdm_matcher 2021-03-22 09:34:32 -04:00
James Agnew dc41d5ad61
Add terminology mapping and display population interceptors (#2488) 
* Start work on code mapping interceptors

* Work on generation

* Add terminology mapping and display population interceptors

* Add changelog

* License header updates

* Test fixes

* Fix typo

* Interceptor fixes

* License header update

* Test fixes

* Mapping fixes

* Version bump

* License header updates

* Add null tests

* Add null guard

* Intermittent fix
 2021-03-21 12:03:57 -04:00
long 989e9e7903 refactored terserUtil, added equals function in ExtensionUtil 2021-03-17 13:02:59 -06:00
James Agnew d857048207
Preserve meta values in stored resources (#2481) 
* Fix #1731

* Test fix

* Test fixes

* Avoid intermittent failure
 2021-03-17 09:23:22 -04:00
Kunjan Patel bdee1f1269
Update points.json for adding a point in atlas (#2482) 2021-03-17 05:50:07 -04:00
Tadgh b191f1da2b
Merge pull request #2480 from hapifhir/issue-2479-bad-packages 
Have CreatePackageCommand automatically add fhirVersions based on --fhir-version flag
 2021-03-16 18:00:27 -04:00
michelgleeson 0a6c61372c
Parameterize term valueset concept view dao (#2477) 
* Generic the list type to accomidate different substring queries

* special subquery for Oracle

* change the conceptview dao depending on dialect

* address review comments

* remove generics

* no longer inherits

* copy paste from non Oracle version

* dang copy pasters

* changelog

Co-authored-by: Mike G <michel.gleeson@gmail.com>
 2021-03-16 16:26:19 -04:00
Tadgh c3e6de3aff Add changelog 2021-03-16 13:47:29 -04:00
Nick Goupinets 744adb2d08 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-15 10:32:04 -04:00
James Agnew 2e7eb972ff
Avoid NPE in ResourceVersionConflictResolutionStrategy for system request (#2471) 
* Avoid NPE in ResourceVersionConflictResolutionStrategy for system
request

* Add changelog
 2021-03-12 19:23:49 -05:00
Nick Goupinets e188a95d66 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-12 16:17:25 -05:00
James Agnew 0ad57c51bb
Fix resource reindexing on partitioned seerver (#2468) 
* Fix resource reindexing on partitioned seerver

* Add changelog

* Test fix

* Test fix

* Tets fix

* Test fix
 2021-03-12 14:14:39 -05:00