James Agnew
c8ce07c40e
Deprecate redundant IVersionSpecificBundleProvider method
2019-09-30 09:45:31 -04:00
James Agnew
f5788341f2
Add no-shrink-columns option to migrator ( #1500 )
...
* Add no-shrink-columns option to migrator
* Address review comments
2019-09-23 18:44:51 -04:00
jamesagnew
8b09b3f3eb
Rename config enum for consistency
2019-09-03 07:01:36 -04:00
James Agnew
1b1d80b850
Test fix
2019-08-29 21:02:19 -04:00
jamesagnew
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
jamesagnew
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
James Agnew
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
James Agnew
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
Ken Stevens
808da73854
Merge pull request #1413 from jamesagnew/ks-migration-tests
...
test all migrations to latest version
2019-08-02 16:13:24 -04:00
Ken Stevens
48c8497086
Changed migration test from derby to h2
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Added a new test from 340 to latest version.
2019-08-02 16:00:43 -04:00
Diederik Muylwyk
345ce880ce
Address review comments.
2019-08-02 14:45:59 -04:00
Diederik Muylwyk
ca01f31ca9
Enable support of DSTU3 for upload-terminology command.
2019-08-02 14:00:56 -04:00
James Agnew
04ce9cfc1a
Add support for uploading custom terminology using the
...
$upload-external-code-system operation
2019-07-30 17:30:18 -04:00
James Agnew
a4ca5374ec
Add terminology delta operations ( #1401 )
...
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
James Agnew
33531f9010
Add some test logging
2019-07-14 16:56:43 -04:00
James Agnew
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
James Agnew
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
...
* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
jamesagnew
dff2fdd3cf
GET RID OF TRAILING LICENSE HEADER SPACES ONCE AND FOR ALL
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YESSSSSSSSSSSSS
2019-07-05 11:19:51 -04:00
Stig Rohde Døssing
b56f59542a
Move JettyUtil to new module
2019-06-14 18:34:45 -04:00
Stig Rohde Døssing
aab7bb6b64
Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities.
2019-06-14 18:34:45 -04:00
Diederik Muylwyk
aed5bb8955
Resolve #1320 : "import-csv-to-conceptmap is failing unexpectedly." ( #1322 )
...
* Reproduced issue in unit test and identified potential solution.
* Fixed using BOMInputStream.
* Added changelog.
* Added a missing word in changelog.
* Added a missing word in changelog. Take two.
2019-06-03 10:53:04 -04:00
James Agnew
c811fe8a2f
One more test fix
2019-05-30 21:57:49 -04:00
James Agnew
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
jamesagnew
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
patrick-werner
1aeb54e94e
added all fetchValueSet Implementations
2019-03-30 21:02:24 +01:00
James Agnew
48c10bddc5
Narrative Generator refactoring ( #1219 )
...
* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
2019-02-27 14:59:57 -05:00
James Agnew
7adb14c754
Make App logging customizable
2019-02-08 17:14:22 -05:00
James Agnew
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
jamesagnew
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
jamesagnew
d4af1ee2a3
Add tests and license headers
2019-02-04 16:34:39 -05:00
jamesagnew
ea84f2c377
Version bump hibernate search
2019-02-02 11:26:19 -05:00
Ken Stevens
9280cde491
Subscription only registers active ( #1189 )
...
* Fixed a bug in standalone subscription subscriber: It was adding REQUESTED subscriptions to the active subscription registry. (Only ACTIVE subscriptions should be added.)
2019-02-01 10:14:46 -05:00
James Agnew
31b8a392b7
Better CLI error handling for unit tests
2019-01-03 12:57:18 -05:00
James Agnew
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
jamesagnew
81e8131ffc
Fix broken test
2018-12-09 19:36:03 -05:00
James Agnew
8c7f249a21
Migrator enhancements and adjust reindexer to account for missing
...
versions
2018-12-04 17:33:29 -05:00
James Agnew
84acafe3af
Streamline expunge operation
2018-11-15 11:37:16 +01:00
James Agnew
75210d614b
Bump to 3.7.0-SNAPSHOT
2018-11-12 22:37:52 -05:00
James Agnew
bbcbcbf5d6
Don't hardcode commons-compress version
2018-11-12 12:26:17 -05:00
James Agnew
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
jamesagnew
896568c0f7
License updates
2018-11-04 16:06:53 -05:00
James Agnew
bc72093555
Add reindexing support based on table instead of column
2018-11-04 20:00:27 +01:00
James Agnew
87f90fec47
Correctly handle password promnpt in CLI
2018-10-01 11:59:47 -04:00
James Agnew
3e445faf47
Squashed commit of the following:
...
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:04:23 2018 -0400
Merge branch 'master' into sync_r4
commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:01:42 2018 -0400
Keep working on getting R4 building
commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date: Tue Sep 25 13:11:27 2018 -0400
Ongoing work to get R4 working
commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date: Thu Sep 20 08:15:36 2018 -0400
Work on getting build working
commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date: Thu Sep 20 05:16:53 2018 -0400
Merge branch 'master' into sync_r4
commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date: Mon Sep 17 05:30:39 2018 -0400
Work on R4 sync
commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date: Sun Sep 16 10:19:00 2018 -0400
Work on sync
commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 14 17:28:28 2018 -0400
Work on R$ sync
commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 14 08:33:07 2018 -0400
Work on R4
2018-09-29 13:48:35 -04:00
James Agnew
002c4b3ff7
Add retrigger subscription operation
2018-09-27 20:03:01 -04:00
James Agnew
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
jamesagnew
321e88c811
License header updates
2018-09-14 05:25:07 -04:00
James Agnew
13fc65d6fe
Work on migrator
2018-09-08 09:10:13 +08:00
James Agnew
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
James Agnew
4852b0b60f
Work on migration
2018-09-08 07:14:43 +08:00
James Agnew
f5d567cd00
Work on migrator
2018-09-08 03:30:35 +08:00
James Agnew
fd55aa292c
Allow interactive prompts for credentials from the user
2018-08-19 15:13:06 -04:00
James Agnew
a40b7fe7d3
Add user prompting to BaseCommand
2018-08-18 15:04:14 -04:00
jamesagnew
7eb36c3392
Work on subscription
2018-08-11 16:14:53 -04:00
James Agnew
ece0c9defe
Subscription cleanup
2018-08-10 09:07:55 -04:00
jamesagnew
43ac912033
Clean up terminology uploading
2018-07-15 15:22:52 -04:00
James Agnew
1ec65d03fb
Merge pull request #969 from rhausam/upload-terminology
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Fix client upload-terminology for r4.
2018-06-27 10:37:47 -04:00
Diederik Muylwyk
903df68d2a
978 cli tools for importing exporting terminology mappings need to be fixed ( #988 )
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* Fixed export issue.
* Fixed import issue.
* Fixed tests.
* Fixed tests.
2018-06-07 10:22:41 -04:00
Diederik Muylwyk
044fc13b43
Added double quotes to CSV test data to ensure CLI import test still passes.
2018-06-04 13:58:29 -04:00
jamesagnew
abcf7852b1
Tests pasing locally
2018-05-31 09:10:34 -04:00
jamesagnew
35a827eac3
Support for JDK10 working now
2018-05-30 08:54:16 -04:00
James Agnew
a52805e504
Work on JDK9 support
2018-05-30 05:45:08 -04:00
Rob Hausam
b29cdc22f3
Fix client upload-terminology for r4.
2018-05-29 22:54:09 -05:00
Diederik Muylwyk
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
Diederik Muylwyk
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
jamesagnew
49aaa01db8
Fix compile issues
2018-05-23 17:42:48 -04:00
Diederik Muylwyk
baac934fba
Added QuoteMode.ALL to export-conceptmap-to-csv operation in hapi-fhir-cli.
2018-05-22 15:09:29 -04:00
James Agnew
c588e01a4d
Handle invalid paths in Consent resource
2018-05-16 21:45:23 -04:00
James Agnew
4fd868afae
Credit for #946 and add extensions to the CLI uploader
2018-05-16 19:32:12 -04:00
James Agnew
e187d72a3b
Fix server command
2018-05-16 16:13:16 -04:00
jamesagnew
8d6940a70e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-15 07:35:24 -04:00
jamesagnew
f9946fee61
Fixes to get the build passing once more
2018-05-15 07:34:44 -04:00
patrick-werner
58e231d299
removed duplicated hapi-fhir-igpacks dependency
2018-05-15 11:56:56 +02:00
James Agnew
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
...
* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
jamesagnew
ccb859fdbe
FIxes to get the synced build working
2018-05-13 08:08:34 -04:00
James Agnew
f1ba0016b2
Improve the error message thrown by JPA server
2018-05-11 17:03:48 -04:00
James Agnew
38e6edf4ae
Command updates for validate command
2018-05-10 17:29:31 -04:00
James Agnew
b17eebd8d2
Squashed commit of the following:
...
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 11:50:53 2018 -0400
Update changelog
commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 11:19:28 2018 -0400
Parameter updates
commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 07:24:30 2018 -0400
More test fixes
commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 06:26:48 2018 -0400
Fix compile error
commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 06:25:18 2018 -0400
Another test fix
commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 06:18:06 2018 -0400
Fix compile error
commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 06:13:50 2018 -0400
More work on tests
commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu May 10 05:36:27 2018 -0400
One more fix
commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date: Wed May 9 21:32:10 2018 -0400
Work on validator
commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date: Wed May 9 19:34:10 2018 -0400
Validator fix
commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date: Wed May 9 18:44:04 2018 -0400
Fix test
commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date: Wed May 9 17:22:34 2018 -0400
Merge validator
2018-05-10 11:53:32 -04:00
Diederik Muylwyk
14a070a47e
927 cli tooling is needed for creating and maintaining conceptmaps using csvs ( #934 )
...
CLI tooling for import/export of ConceptMaps using CSVs has been implemented.
2018-05-10 11:12:45 -04:00
jamesagnew
7c6ba93d9e
Header updates
2018-04-30 16:24:11 -04:00
James Agnew
392feb7082
Refactor CLI to extract commands
2018-04-30 15:04:35 -04:00