d7c683f6b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-11 09:08:34 -04:00
2f37015d57
Clean up parsers so that elements are always encoded according to their order in the structures that contain them
2016-04-11 08:36:12 -04:00
88157fe1a6
Test data uploader fixes
2016-04-08 16:31:42 -04:00
5cd13bc73f
Improve error logging when the wrong version structure is passed into a parser
2016-04-07 13:55:38 -04:00
39fc134482
Fix #326 - Correctly serialize DSTU3 references in JsonParser. Thanks to
...
@fw060 for the patch!
2016-04-05 16:33:29 -04:00
079f966086
Parser enhancements when parsing bundles
2016-04-05 08:59:24 -04:00
891dddff1e
Work on auth interceptor
2016-04-04 06:21:49 -04:00
45390ebc89
Don't parse 1974-12-25+10:00 as this is not a valid FHIR time
2016-04-03 18:45:08 -04:00
20e04a7c80
Merge branch 'dstu3_structs'
2016-04-03 18:16:02 -04:00
18b3d0df65
Update to DSTU3 Montreal definitions
2016-04-03 18:14:31 -04:00
6d0dcc0213
More work on auth module
2016-04-02 08:59:01 -04:00
c345209ce4
Fix #318 - Apply setDefaultTypeForProfile to contained resources
2016-04-01 17:10:49 -04:00
21b42acc94
Update licenses
2016-03-29 13:01:51 -04:00
46ba27ec8f
Work on security interceptor
2016-03-28 20:51:27 -04:00
b2f11e0bfc
Fix #317 - Allow search params to be used when doing REST operations
2016-03-26 13:44:54 -04:00
6ffb1c8c56
Fix #312 - Don't fail if extension list contains a null
2016-03-25 19:27:18 +01:00
f49130baf8
Add unit tests and documentation to the JAX-RS client implementation
2016-03-25 19:17:41 +01:00
f9fa6265df
Correctly handle JPA search by token with system but no code
2016-03-25 16:20:43 +01:00
c6f06548fc
Fix #315 - Use custom types for searches and other client operations
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when requested
2016-03-24 11:09:41 +01:00
1adfc4b4d9
Fix #315 - Allow declaring of custom types for specific profiles
2016-03-22 11:46:08 +01:00
ab4deb406c
Allow runtime query of bound enum type
2016-03-18 19:41:43 +01:00
82c6d82444
Sere up Binary resources as binary content even if the browser puts
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application/xml in the Accept header
2016-03-18 18:38:44 +01:00
9aa7eea274
Add mode to parser to force it to not encode certain elements when serializing
2016-03-16 07:53:21 -04:00
00ced6a652
Improve performance of _lastUpdated queries in JPA server
2016-03-14 06:31:45 -04:00
6ddf91d9e2
Correctly handle extended operation in annotation based client where the
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response is a raw resource and not a Parameters resource
2016-03-12 15:10:02 -05:00
452316aed7
Fix #313 - Do not treat OPTIONS [base]/foo as a request for server's
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conformance statement. Thanks to Michael Lawley for reporting!
2016-03-12 14:53:20 -05:00
ce253bed70
Properly deserialize bound codes
2016-03-12 13:23:55 -05:00
232afee955
Improved error messages for #305
2016-03-11 07:56:00 -05:00
ed92f64e52
Fix #305 - Don't allow update resource body IDs to be missing or incorrect
2016-03-10 07:44:05 -05:00
3897167518
Return correct bundle type on $everything operation
2016-03-09 23:11:40 -05:00
8de41ca8b4
Attempting to reduce memory usage during tests
2016-03-06 14:38:18 -05:00
99a4b2c29e
Refactor JPA SearchBuilder
2016-03-05 20:46:04 -05:00
b147083f5a
Fix #308 - Remove unneded warning on parsing declared extension
2016-03-02 22:18:33 -05:00
970bc3ed89
One more test for #304
2016-03-02 07:29:09 -05:00
94f50686bc
Fix #304 - Better error message if wrong generic type is used
2016-03-02 07:06:17 -05:00
3fd9f9518a
Handle unexpected extensions when parsing using IParserErrorHandler
2016-03-02 06:52:46 -05:00
496d866f48
Fix #274 - Primitive elements with no value but an extension were sometimes not encoded correctly in XML, and sometimes not parsed correctly in JSON.
2016-02-28 22:15:43 -05:00
66ec863bde
Fix build
2016-02-28 21:19:39 -05:00
ed5bffba9e
Fix #299 - Don't crash if the client receives extensions in Bundle.entry.search
2016-02-28 19:38:54 -05:00
c7d3f39457
Fix #296 - Handle :missing qualifier on QuantityParam
2016-02-28 18:32:43 -05:00
d8c571dfdc
Just some cleanup
2016-02-28 18:25:20 -05:00
c14a1330b4
Fix #302 - Don't crash server when adding profiles
2016-02-28 16:07:28 -05:00
524b16b1e8
Fix header generation for clients
2016-02-28 15:44:10 -05:00
1da5855c9c
Add Eclipse files to git
2016-02-28 14:02:29 -05:00
f1e1ee9ff9
Merge JAX-RS client fixes
2016-02-28 13:34:57 -05:00
69450c7dab
Merge branch 'master' into jaxrs-client
2016-02-27 09:48:36 -05:00
7fdbee6f21
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-26 18:20:32 -05:00
39f6420066
Start working on compartment support
2016-02-26 18:16:35 -05:00
d383b402d1
Correct handling of Binary resources in client and server where the
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binary contains embedded FHIR content
2016-02-25 14:31:26 -08:00
4a26064cd6
In the client, the create/update operations on a Binary resource (which
...
use the raw binary's content type as opposed to the FHIR content type)
were not including any request headers (Content-Type, User-Agent, etc.) Thanks to Peter Van Houte of Agfa Healthcare for reporting!
2016-02-25 12:54:52 -08:00
d11cbab15c
Don't add WWW-Authenticate header to response on AuthenticationException
2016-02-25 11:03:04 -08:00
d64cf57b0d
Inclusion of jaxrs-client : complete removal of the dependencies for jaxrsserver project to apache httpclient and httpcore and only rely on jax-rs
2016-02-25 13:38:31 +01:00
f8ea639af9
Merge remote-tracking branch 'remotes/petervanhoute/jax-rs-client': inclusion of jaxrs client by addition of interfaces around the apache client classes
2016-02-24 18:04:49 +01:00
1ba0ae3960
Support inline match URL references, per Simone's requast for the next
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connectathon
2016-02-23 13:12:30 -08:00
fd2eaff12d
Fix javadoc
2016-02-19 06:53:23 -05:00
6ce4056f7a
Fix #298 - Don't handle /metadata for methods other than GET
2016-02-19 06:40:07 -05:00
43bdfc0345
Fix #297 - Resource not populated in ActionRequestDetails for validate method
2016-02-19 06:21:05 -05:00
4975d212fa
Add userdata map to interceptors which can be passed around
2016-02-17 08:05:55 -05:00
9b304748ad
Work on terminology service
2016-02-16 21:29:00 -05:00
c1141eb18f
Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes
2016-02-15 10:05:39 -05:00
23f9292b50
Add support for comments in XML and JSON parsing/encoding
2016-02-08 22:05:17 -05:00
961cde41bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-08 14:22:20 -05:00
f21851099c
Version bump
2016-02-08 13:59:09 -05:00
d93c54c0aa
Version bump to 1.5
2016-02-06 14:18:56 -05:00
0ff111be87
Fix #291 - Don't fail the server for untyped list returns
2016-02-06 14:18:04 -05:00
f9e4398c89
fix pom
2016-02-05 14:59:10 +01:00
68b816dce7
Prepare for 1.4 release
2016-02-03 16:56:32 -05:00
e0e52f96c6
Version bump to 1.4 (finally!)
2016-02-03 15:25:32 -05:00
def7fc93e0
Merge pull request #289 from petromykhailysyn/master
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ServletContextPath can start with servletPath, it should be taken into consideration
2016-02-03 14:06:18 -05:00
93d9011691
Fail server if conditional param is not of type String
2016-02-02 07:11:18 -05:00
32daeb6f58
Switch DSTU2.1 to DSTU3 per FMB's decision
2016-02-01 08:55:58 -05:00
914f615b8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-28 11:35:16 -05:00
ecc48317f2
Version bump dependencies
2016-01-28 08:31:19 -05:00
00f0ea4a0b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-27 08:36:10 -05:00
1bc35f1ba3
Support modifiers on token parameters
2016-01-27 07:05:41 -05:00
a7313023f7
Revert "If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base."
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This reverts commit 0e3bb5a797
2016-01-26 17:02:24 +02:00
83823aad35
ServletContextPath can start with servletPath, now it's taking into consideration while determinate contextIndex.
2016-01-26 16:29:16 +02:00
7ed14d538a
Remove warning
2016-01-24 14:53:40 -05:00
0e3bb5a797
If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base.
2016-01-22 10:42:36 +02:00
0f835b5e55
Exposing http client request pool max parameters on restful client factory:
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* added setters on restful client factory to allow changing max total connections and max connections per route for pooling http connection manager
* added defaults for max total connections and max connections per route on restful client factory interface
2016-01-20 11:50:49 -05:00
1ba03f4a9b
Fix #283 - Remove servlet 3.0 dependency where possible
2016-01-20 08:11:03 -05:00
944afc2785
Add better constructors for date types
2016-01-20 07:40:57 -05:00
f9960b22d5
Clean up validation
2016-01-15 18:44:28 -05:00
d290110126
Fix validation
2016-01-15 18:02:20 -05:00
589059256f
Correct issues uncovered during connectathon
2016-01-11 07:42:13 -05:00
8dadc77420
create jax-rs client
2016-01-08 12:01:56 +01:00
b6d3a003d3
move client api-classes into api package
2016-01-08 11:47:00 +01:00
1271c36d1b
create a jax-rs client
2016-01-08 10:50:04 +01:00
c1afb4f54d
Get overlay working for DSTU2.1
2016-01-07 15:04:56 -05:00
0c8c414784
Try to get travis working
2016-01-07 11:17:54 -05:00
479da24cfb
Bump license files
2016-01-07 08:50:07 -05:00
a54cb06c03
More travis cleanup
2016-01-06 14:02:20 -05:00
56620eebfb
Clean up testpage-overlay to work with DSTU2.1
2016-01-06 08:49:24 -05:00
2e434650ea
Fixed to testpage overlay for DSTU2.1
2016-01-05 17:02:37 -05:00
b7aa4e15b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-05 08:31:24 -05:00
59da230702
Improving validation documentation
2016-01-05 07:20:54 -05:00
7005cd52d9
Performance tweaks to the validator and get the DSTU2.1 endpoint working
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with validation
2016-01-04 17:57:00 -05:00
685bd9345b
Add request/response validator interceptors
2016-01-03 21:52:11 -05:00
5789db8743
Remove dependency on cobertura at compile time
2016-01-02 10:55:52 -05:00
c8365ab566
Fix build
2016-01-01 23:18:44 -05:00
718a26671f
DSTU2.1 structures working
2016-01-01 16:59:19 -05:00
056900f324
Lots more work on DSTU2.1 structures
2015-12-30 11:27:12 -06:00
7692e5d714
More work on DSTU2.1 structs
2015-12-22 09:32:06 -05:00
2469aa3725
Lots of DSTU2.1 structure work
2015-12-20 23:35:47 -05:00
aaf85f2323
Lots of work on DSTU2.1 structures
2015-12-20 09:29:52 -05:00
6ac62a5b46
Merge branch 'master' into hl7org_dstu21
2015-12-15 20:33:31 -05:00
3005c9a766
Still working on unit tests
2015-12-15 09:11:01 -05:00
22ff1db183
Work on tests
2015-12-15 07:14:21 -05:00
2b0a800d98
travis....
2015-12-14 22:44:05 -05:00
c8535b72b6
More travis
2015-12-14 22:34:53 -05:00
0bf5172de6
More travis work
2015-12-14 22:28:03 -05:00
b2a9836cda
More logging to try and figure out the travis failures
2015-12-14 22:12:54 -05:00
a623003a56
Fix #240 - Support target resource type in server _include and _revinclude values
2015-12-14 21:50:35 -05:00
d95bd269c0
Correctly encode value[x] field names when the datatype is a profiled type such as markdown
2015-12-14 21:04:27 -05:00
2eaa1eddae
Fix compile
2015-12-14 18:22:21 -05:00
9ef0498775
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-14 10:56:33 -05:00
97d6d09663
Work on #240 - Not yet working in JPA
2015-12-14 08:17:33 -05:00
68bb244328
Lots of work on new structures
2015-12-13 22:44:41 -05:00
117f9eb977
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-10 08:24:30 -05:00
85ec9d9264
Work on 2.1 structures
2015-12-10 08:24:12 -05:00
0a0daedcfd
Still not working DSTU2.1
2015-12-09 22:49:02 -05:00
67eb06665e
Work on test indexing
2015-12-03 22:41:37 -05:00
8ed9ca83af
Fix build
2015-12-03 21:52:40 -05:00
547b5290a4
Update resource defs
2015-12-01 18:35:24 -05:00
4398040451
Add count(int) method to fluent client search
2015-12-01 10:22:50 -05:00
07078e4ce3
Add GZip support to client and server for client-to-server uploads
2015-11-29 15:03:28 -05:00
d47e0e5e77
Add DSTU2.1 resources
2015-11-29 11:43:09 -05:00
e6b47855e6
Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master
2015-11-27 14:59:53 -05:00
00be143207
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-26 07:03:14 -05:00
a046afe1d0
Merge pull request #259 from nrpeterson/boundcodeableconcept-serialization
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Add serializability for BoundCodeableConceptDt
2015-11-26 06:59:14 -05:00
14e326c2bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-26 06:57:08 -05:00
9c9ffe1fb7
Remove dependency on JDK 7
2015-11-26 06:56:52 -05:00
1fe3bb9ff0
Updates from DevDays
2015-11-23 06:13:02 -05:00
13b3601843
Make IBoundCodeableConcept and IValueSetEnumBinder extend java.io.serializable; add a test to verify that MaritalStatusCodesEnum in DSTU2 is now serializable.
2015-11-20 12:15:31 -08:00
c78be081ef
Add CLI test
2015-11-20 10:30:10 +01:00
2f12c9ed01
Bump version to 1.4-SNAPSHOT
2015-11-15 20:11:05 -05:00
f9f33f059b
Version bump to 1.3
2015-11-15 12:53:02 -05:00
6fd5aecec7
Fix #250 - Honour Accept: text/xml and Accept: text/json
2015-11-05 07:32:33 -05:00
3fc7a16735
Fulltext searching works
2015-11-02 08:12:36 -05:00
63db1b646f
test in weblogic: fix interceptor + stateless on abstract
2015-10-30 11:35:11 +01:00
2cc88d76eb
Cleasn up JPA interceptors
2015-10-29 16:44:51 -04:00
d3685e72ba
Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve
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bundle type when retrieving pages
2015-10-29 15:38:19 -04:00
367163c46a
fix return url
2015-10-29 15:55:37 +01:00
a262bf64d0
fix paging
2015-10-29 15:54:09 +01:00
65598c200e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-28 07:39:18 -04:00
5a2ee77142
Parser (XML and JSON) shouldn't encode an ID tag in resources
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which are part of a bundle when the resource has a UUID/OID
ID.
2015-10-26 22:47:06 -04:00
69658ab754
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-23 08:22:40 -04:00
eea406e10e
ResourceReferenceDt#loadResource(IRestfulClient) did not
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use the client's read functionality, so it did not
handle JSON responses or use interceptors. Thanks to
JT for reporting!
2015-10-23 08:21:25 -04:00
e93f7542a5
Remove unused check
2015-10-23 07:22:15 -04:00
8d515feb6d
Fix #242 - Allow compartment and read method to coexist for server
2015-10-21 11:58:19 -04:00
5edd290013
More work on JPA server transactions
2015-10-20 10:52:29 -04:00
ae416dcd62
Improve nexted search/read handing in transactions in JPA server
2015-10-20 10:35:18 -04:00
6729ea0479
Work on support for transaction searches with paging in JPA
2015-10-19 20:21:06 -04:00
e9d18af5d9
Bump library versions
2015-10-14 18:11:52 -04:00
0430eb1626
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-13 12:13:43 -04:00
6d93cbcaae
Get content search working correctly
2015-10-13 09:18:34 -04:00
a2bf374470
Merge pull request #239 from botunge/master
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Make dependencies truly optionel and clean up android pom.
2015-10-12 20:06:24 -04:00
81a90ecca8
Temporarily restore file
2015-10-12 20:05:21 -04:00
cb886c2975
Remove unused BeanUtils
2015-10-12 19:54:23 -04:00
b827823004
Improve efficiency of JPA queries with _lastUpdated
2015-10-12 09:32:25 -04:00
16989435b0
Don't export a _format on paging links if the request didn't have one
2015-10-09 17:42:45 -04:00
588016e406
Merge branch 'master' into fulltext
2015-10-09 09:15:48 -04:00
4dbd180cf6
Clean up testing
2015-10-08 17:38:14 -04:00
1afaea81d6
rename jax-rs classes + add unit tests to example project
2015-10-08 09:08:22 +02:00
7f910974a2
create seperate response and server interfaces and classes for servlets and jaxrs
2015-10-07 17:11:16 +02:00
ad868038a8
Work on Lucene searching
2015-10-07 09:01:32 -04:00
9fef4f6bab
Allow valueset operations to work against type in JPA
2015-10-06 18:53:09 -04:00
828a7966c7
some more test
2015-10-06 22:13:18 +02:00
7ad5d6bba8
Move dependency on java.util.jar and java.beans to optional dependency
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Move some more dependencies to optionel dependencies and write more test
for different base methods.
2015-10-06 22:13:15 +02:00
b62eb1168c
Allow server operations to work at the type level
2015-10-06 11:45:49 -04:00
80575b5380
Generic client now allows search by URL
2015-10-05 15:30:30 -04:00
91afb99b7b
make sure hapi fhir base creates sources jar
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In order to streamline build of android jar with dependencies all
dependencies should publish a sources jar also.
2015-10-05 21:18:59 +02:00
43aad1eb98
Properly support chains in JPA conditional URLs
2015-10-04 15:38:58 -04:00
e040ef3f43
Merge remote-tracking branch 'upstream/master'
2015-10-04 21:07:46 +02:00
64b70d412a
move schematron validator to sub package
2015-10-04 21:05:55 +02:00
f4f57fd480
Make dependencies truly optionel + clean up / minimize android build
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both Phloc and Schematron was not truly optionel since they was referred
from different files. So the references has been moved to a factory and
ObjectUtil extended for some of the missing methods, where Schematron
was used. Android pom file is cleaned so that all artifcates are build
using the same base configuration and then schematron, phloc and some
server components have been removed from artifact to minimize android
artifacts.
2015-10-04 21:05:30 +02:00
48d56b4722
Fix connectathon discovered issues
2015-10-03 23:52:30 -04:00
c666b9c196
Fix compile issues
2015-10-03 16:11:47 -04:00
e7e8f8dd81
Use correct status codes for failed deletes, and support multi delete in
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JPA
2015-10-02 18:18:54 -04:00
aa32e6f0a9
Improve ValueSet operations in JPA
2015-10-02 12:37:56 -04:00
b4df6f9612
add server using jaxrs
2015-10-02 11:27:21 +02:00
9560ab8dd2
Remove server code from android client and make android client smaller
2015-10-02 00:13:19 +02:00
119a4f36d9
Add error checking and better handling for match URLs in JPA server
2015-10-01 16:54:34 -04:00
900c93949a
Work on subscriptions, and correct indexing of codes in JPA
2015-10-01 08:56:17 -04:00
f9e4a3e1b5
Fix #233 - elementQuantity gets incorrectly encoded as elementDuration
2015-09-29 19:41:31 -04:00
ca8c257833
Support lastupdate filtering and sorting on JPA everything operation
2015-09-29 13:24:33 -04:00
1cc6a05273
FIx validation for resources using v2 tables
2015-09-29 10:51:36 -04:00
9492744018
Work on subsciprions
2015-09-28 09:06:57 -04:00
51a046ea26
Handle sort by number, uti and token
2015-09-25 16:53:22 -04:00
1361e69177
Respect server default encoding if an Accept header is received which
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indicates equal weight for both encodings
2015-09-24 17:52:52 -04:00
072c1ece87
Send Accept header on client requests, and allow string responses in
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QuestionnaireResponse validator for questions of type OPENCHOICE
2015-09-24 13:40:07 -04:00
bd4d7e276f
Fix tests
2015-09-24 10:10:05 -04:00
70eff0dc7f
Improve error message when $meta-add and $meta-delete are called with no meta element in the
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input parameters. Also improve OperationOutcome rendering in narrative generator.
2015-09-24 08:36:25 -04:00
7e6844be56
Improve error message when JSON parser finds an object where an array is expected
2015-09-24 07:27:43 -04:00
a15ed8e944
Work on subscriptions, and correct an issue with DateRangeParam where comparators get ignored
2015-09-23 08:36:11 -04:00
ec8b3b68f6
Work on subscription
2015-09-22 08:06:23 -04:00
04c2cce13f
Start working on JPA subscriptions
2015-09-21 09:08:19 -04:00
70e942e9f8
Version bump to 1.3-SNAPSHOT
2015-09-19 11:00:57 -04:00
00bf8231ba
Upgrade coveralls plugin
2015-09-16 14:02:56 -04:00
31934ff582
Version bump to 1.2
2015-09-16 07:09:03 -04:00
jamesagnew
petervanhoute
petromykhailysyn
Matt Blanchette
Nick Peterson
Thomas Andersen