3eeca4a8fd
Merge branch 'master' into ja_interceptor_jpa_queries
2019-04-01 09:59:03 -04:00
e6a6c22783
Bump a few project dependencies
2019-03-31 13:57:02 -04:00
e85bec2858
Ja inline references ( #1252 )
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* Use a single IN clause for OR reference searches
* Add changelog
* One more attempt at getting the free port util to actually work... sigh
* One more tweak to free ports
* Bundle fix
2019-03-26 10:42:42 +01:00
c701de2861
Create a performance interceptor framework for HAPI FHIR
2019-03-22 01:06:03 +01:00
d1667487c2
Clean up unique composite search params
2019-03-21 21:57:38 +01:00
08c7afb804
Reduce logging in JPA server
2019-03-14 17:42:13 -04:00
a8c76450e5
Re-enable contains searches on the public HAPI FHIR server and improve
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message formatting in HapiLocalizer
2019-03-14 13:19:26 -04:00
ed4da7c414
Add setting to disable resource type target validation in JPA
2019-03-12 17:45:19 -04:00
f934f76c96
Several JPA search fixes ( #1231 )
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* Search fixes
* Add some tests
* CHangelog
* Some cleanup of the query tracker
* FIx XML issue in changelog
* Test fixes
* SOme test fixes
* Address review comments
* Fix test breakage
2019-03-11 15:49:34 -04:00
9bc0f6784d
Search paging timeout with 1500 < n < 2000 results ( #1221 )
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* Avoid paging links when offset is artificially set very high
* Ongoing fixes
* Adding logging and clean up transaction processing
* Add changelog
* More work on queries
* Keep working on getting tests passing
* More test fixes
* More work on tests
* More test works
* One more test attempt
* Ongoing fixes
* One more change
* FIxes to search algorithm
* Add changelog
* Clean up for review
* Fixed NPE in token matcher when system is not null and value is null
* test opposite (null system not null value)
* added null protection to all matchers
* Address review comments
* Address broken test
* Trying to resolve DB ordering issues
2019-03-06 05:45:05 -05:00
43c07077be
Automatically remove duplicate conditional creates in JPA
2019-02-22 12:57:07 -05:00
89b08cd627
Improve SQL IN(..) queries ( #1214 )
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* First attempt, probably has compile issues
* Fix qualified searches
* Another test fix
* More test fixes
* Add changelog
* Two more fixes
* Revert SQL logging
2019-02-20 16:38:51 -05:00
87ed00a002
Add ability to generate named parametrrs in a version independent way
2019-02-15 16:27:16 -05:00
a35f30b18e
Merge pull request #1208 from jamesagnew/reuse-subscription-channels
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Reuse subscription channels
2019-02-15 13:42:54 -05:00
514ace5981
Changelog for #1209
2019-02-15 09:58:53 -05:00
485335e975
Allow terminology service to work without having Lucene enabled for
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simple ValueSet expansions
2019-02-14 20:47:28 -05:00
ffc5966aa3
Merge branch 'master' into reuse-subscription-channels
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# Conflicts:
# src/changes/changes.xml
2019-02-14 19:42:00 -05:00
badbde7e4a
SubscriptionRegistry re-uses channel and handlers if channel type didn't change when subscription is updated
2019-02-14 19:38:31 -05:00
10c348d44f
Tweak to elements parametr support
2019-02-14 19:30:10 -05:00
96ad875d3a
Credit for #1204
2019-02-11 09:04:57 -05:00
37fc432fed
Credit for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/pull/3/
2019-02-07 20:20:32 -05:00
c01b9ef5ab
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-02-07 16:47:27 -05:00
dc35e500a7
Add additional files to distribution
2019-02-07 16:47:14 -05:00
810f1ad969
Improvements to elements parameter as well as adding attributes to
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RequestDetails
2019-02-07 16:45:59 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
c6dfbacd7a
Credit for #1148
2019-02-05 20:31:28 -05:00
e401ec86e4
Enhanced elements ( #1192 )
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Squashed merge: Add elements exclude mode
* Start working on elements enhancement
* Work on elements projection
* Work on elements filter
* Feature is now working
* Just some cleanup
* Address compile issues
2019-02-03 16:41:33 -05:00
86a12bcf2a
Credit for #1114
2019-02-02 11:33:08 -05:00
ea84f2c377
Version bump hibernate search
2019-02-02 11:26:19 -05:00
b46b60798a
Credit for #1130
2019-01-31 05:26:14 -05:00
db42609ca7
Credit for #1135
2019-01-31 05:20:43 -05:00
5f29e4fbf3
Fix #1174 - Prevent serialization exception
2019-01-30 05:49:45 -05:00
5d540d9208
Query optimization in JPA
2019-01-27 20:03:48 -05:00
10c59fceeb
Subscription strategy tag ( #1178 )
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tests pass
2019-01-25 13:01:04 -05:00
5a08593abd
_id support ( #1176 )
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* added support for _id in in-memory matcher
2019-01-23 14:37:34 -05:00
68fae08f20
Fix casing in base64Binary type
2019-01-23 08:34:09 -05:00
eee4c75300
Version bump hibernate
2019-01-23 05:57:20 -05:00
9cf64f78d0
Deprecate a bad setter on RetfulServer, fix a paging issue, and add a
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disabled unit test to the subscription matcher
2019-01-21 14:46:17 -05:00
6c4d4e43a1
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-01-18 07:17:04 -05:00
3d941ed7e3
Credit for #1084
2019-01-18 05:50:30 -05:00
4367e340ae
Log the version number and commit on startup
2019-01-17 16:05:54 -05:00
b8755615b2
Allow AuthorizationInterceptor to read patients if the user has read
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access to the individual instance
2019-01-14 13:53:08 -06:00
38bade0429
Credit for #1118
2019-01-13 17:22:29 -06:00
63b8a70e8a
Allow storing ConceptMap with StructureDefinition as a source or target
2019-01-13 12:24:51 -06:00
fc09ed6966
Fix #1163 - Correctly handle invalid CapabilityStatement
2019-01-11 08:01:48 -07:00
aee7b2b882
Make sure that sub-request transaction searches and reads preserve HTTP
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headers
2019-01-10 07:26:04 -07:00
b8f200f897
Correctly expose chains in DSTU2 server conformance statmeent
2019-01-10 06:15:31 -07:00
ee52d6fb31
Add SearchNarrowingInterceptor
2019-01-09 20:20:46 -06:00
bef3b956d8
Add changelog entry
2019-01-09 13:48:31 -05:00
66dd6dc96c
updated documentation
2019-01-09 13:39:32 -05:00
b3c9b32db4
Credit for #1065 and forward-port fix to R4 provider
2019-01-09 07:19:55 -05:00
62ae71c1c6
Allow authorizing delete operations via a transaction in
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AuthorizationInterceptor
2019-01-07 15:43:36 -05:00
3d94761bcb
Improve response for transactions
2019-01-06 18:08:32 -05:00
5b8fee869e
Add config options for default Prefer header and _total param on server
2019-01-04 16:12:45 -05:00
a1275874f8
Correct subscription delivery metadata
2019-01-04 10:56:21 -05:00
7ba07d9f02
Avoid search failure on Oracle when performing very large includes
2019-01-04 09:11:11 -05:00
1bfa29bbcc
Site updates
2018-12-28 11:42:21 -05:00
14a132a937
Squashed commit of the following:
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commit 965965583070da25b76f
2018-12-27 17:58:47 -05:00
fedc59a8d6
Subscription module startup changes ( #1154 )
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* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.
* EXPERIMENTAL: Moved Subscription registry out of interceptor and introduced ISubscriptionLoader that will be either a Database or FhirClient loader.
5 tests fail. Looks like we're getting too many matches--likely because there is now just one list of subscriptions instead of one list per interceptor.
* Created ActiveSubscription and moved cache bits into it
* Compiles. Next step is get app context to load.
* Application context loads. Now fix NullPointer.
* All subscription tests pass
* FIXME cleanup
* jpa-subscription tests
* fixed config so other module tests work
* MAJOR MILESTONE: All hapi-fhir tests pass.
updated READMEs in example projects
* Moved ExecutorQueue stuff out into its own class
* Organize Imports
* FIXME cleanup
* Null check -> Optional
* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour
* Added SubscriptionCheckingSubscriber test that works without a database
* Moved a few beans to @ComponentScan
* Replaced use of beanFactory with concrete factory classes
* Switched test to use subscribablechannel
* Added SubscriptionLoaderFhirClientTest
* Undid changes that caused SearchParamProviderFhirClientTest to revert to the Database version. It's now calling the FhirClient version again. (oops)
* Confirm that our SubscriptionProviderFhirClient works with a live fhir client
* Organize imports
* Organize imports
* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest
* Ready to go
* organize imports
* add processing queue
* Fixed interface implementation names
* Fix triggering service so it uses new subscriptionmatcherinterceptor
* fixed example
* Renamed "Database" classes to "Dao"
* Tightened up StoppableSubscriber API
* final code review
* processing -> matching naming change
* fix required by CDR
* oops
* Updated changes.xml
* Renamed subscriptioncheckingsubscriber to subscriptionmatchingsubscriber
* Renamed subscriptioncheckingsubscriber to subscriptionmatchingsubscriber
* CDR integration now works
* Changing subscribable channel abstraction layer in preparation for supporting more types of subscribable channels
* Add interface over both types of messages put on queues
* cosmetic change
* added subscription support for r4
* fixed again
* oops
* self code-review
2018-12-23 13:52:26 -05:00
9d3904ef3e
Fix #1142 - Upgrade Spring Boot to latest version
2018-12-23 13:10:03 -05:00
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
ea80d03a74
Credit for #1051
2018-12-21 05:42:39 -05:00
54bb1508db
Changelog for #980
2018-12-20 06:08:10 -05:00
84a34eb3c9
Subscription module support ( #1147 )
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* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.
Moved Subscription registry out of interceptor and introduced SubscriptionLoader
* Created ActiveSubscription and moved cache bits into it
* Moved ExecutorQueue stuff out into its own class
* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour
* Added SubscriptionCheckingSubscriber
* Moved a few beans to @ComponentScan
* Replaced use of beanFactory with concrete factory classes
* Switched test to use subscribablechannel
* Added SubscriptionLoaderFhirClientTest
* Confirm that our SubscriptionProviderFhirClient works with a live fhir client
* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest
* Fix triggering service so it uses new subscriptionmatcherinterceptor
* Renamed "Database" classes to "Dao"
* processing -> matching naming change
2018-12-18 13:09:06 -05:00
f978bc3039
Always apply new search params to any resource reindexing
2018-12-14 13:43:25 -05:00
11b8304cb4
Fix case sensitivity issue
2018-12-13 08:31:35 -05:00
8d195aedf0
Credit for #917
2018-12-13 05:36:19 -05:00
b442982310
Add media interceptor
2018-12-08 18:49:58 -05:00
5a80e70d93
Correctly reindex string indexes
2018-12-06 14:44:42 -05:00
cbaa39fd63
Try to reuse index rows in JPA server ( #1133 )
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* Try to reuse index rows in JPA server
* Address review comments
* One more test fix
* One more test
2018-12-05 19:25:59 -05:00
8c7f249a21
Migrator enhancements and adjust reindexer to account for missing
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versions
2018-12-04 17:33:29 -05:00
c484c69664
Better error message for unqualified search parameter types
2018-12-03 13:14:10 -05:00
6baee4dc3f
Standalone subscription ( #1125 )
2018-11-30 17:19:16 -05:00
650872cd3e
Address SQL syntax issue
2018-11-29 08:37:50 -05:00
b41c222880
Require explicit declaration of authorizationinterceptor operation rules
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on whether the response is authorized or not
2018-11-23 14:25:46 -05:00
d0b194f9d7
Fix two test failures
2018-11-22 08:41:12 -05:00
2e030eebaa
Make sure that reindexing happens correctly
2018-11-21 12:06:10 -05:00
03ebcafdf5
In-memory matcher ( #1116 )
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* Initial refactoring to move database matcher out into its own class
* MAJOR REFACTOR: Pulled indexing code out of BaseHapiFhirDao into a new class ResourceIndexedSearchParams
* Moved calculateHashes
* Replaced @Bean definitions in BaseConfig.java with @ComponentScan
Annotated bean classes with either @Service (if it's stateless) or @Component (if it's stateful). It doesn't really matter which annotation is used, but it's helpful to see at a glance whether a bean is stateful or stateless.
* Move services out of BaseHapiFhirDao
Moved services required by ResourceIndexedSearchParams out of BaseHapiFhirDao and into new classes called LogicalReferenceHelper, IdHelperService, MatchUrlService, and DaoProvider.
Converted SearchBuilder into Prototype Bean
Mark Spring components that depend on daos and entitymanagers with @Lazy so they aren't picked up by hapi-fhir-spring-boot-autoconfigure.
* Added SubscriptionMatcherInMemory
Moved static data out of BaseHapiFhirDao into ResourceMetaParams
Moved translateMatchUrl methods out of BaseHapiFhirDao into MatchUrlService bean
Simplified SubscriptionMatcherInMemory to not depend on entity or dao
Turned all subscribers into prototype beans
* Moved searchParam method out to mySearchParamProvider
Also removed dao and contest parameters from of myMatchUrlService methods
Moved code out of SearchBuilder into SearchParameterMap.clean() so it can be used by inMemoryMatcher
Introduced a new composite subscription matcher that tries to match in memory and if it finds a parameter in the criteria it doesn't support, it falls back to the database matcher.
* Added support for references
Also fixed a small bug in SearchParameterMap that was missing the ";" after "_has" when creating a normalized query from search params.
* Finished implementing all tests from FhirResourceDaoR4SearchNoFtTest
* Make in-memory matcher configurable, disabled by default
* Validate Subscription criteria when they're submitted
Send HTTP 422 UnprocessableEntityException if the criteria fail validation.
* fixed Sonar "Blocker" issues.
* Don't reload the resource before sending it out
Since we can always force a reload using restHookDetails.isDeliverLatestVersion
* Added tests to cover Custom Search param.
* Split ResourceIndexedSearchParam into separate state and service classes
* Cleaned up SearchBuilder.
Removed uses of myCallingDao as an injection mechanism.
Left // FIXME KHS cookie crumbs to clean up
* Reduced dependencies on BaseHapiFhirDao
Removed methods from IDao interface that were used for injection
* Updated change log
2018-11-19 16:19:52 -05:00
58388bb614
Allow client to return methodoutcome instead of resdource for operation
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call
2018-11-19 11:11:49 +01:00
67dbc802be
Better detection of binary content in ResponseHighlighterInterceptor
2018-11-18 14:32:54 +01:00
fad53c6669
Fix a test
2018-11-16 13:15:14 +01:00
4b099cf057
Fix #944 - NPE when using a custom resource class that has a @Block
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child
2018-11-15 16:11:55 +01:00
e75d2e1f10
Credit for #1117
2018-11-15 13:37:32 +01:00
84acafe3af
Streamline expunge operation
2018-11-15 11:37:16 +01:00
31bd2186ce
Update changelog
2018-11-12 09:47:17 -05:00
cbc6f22329
Documentation updates
2018-11-12 09:21:09 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
cb00512522
Credit for #1047
2018-11-11 17:08:30 -05:00
e5b04710ea
Version bump a few dependencies
2018-11-11 17:06:40 -05:00
f61df5c3fe
Use FHIRPath expression parser for custom SP validation
2018-11-09 14:41:20 -05:00
82ec721c99
Allow client defined parameter style for _format param
2018-11-08 15:27:35 -05:00
7e2e53a354
Credit for #1071
2018-11-08 13:33:25 -05:00
9fee827398
Credit for #1103
2018-11-08 13:24:24 -05:00
3121334bfd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-11-07 18:28:28 -05:00
ca9268970e
Site updates
2018-11-07 18:27:08 -05:00
76cd3f6b47
Allow client assigned IDs to be purely numeric in JPA server if
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configured to do so
2018-11-07 18:25:50 -05:00
8796c1c5d2
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-11-04 14:01:17 -05:00
053f4c3be7
Fix bad tag in file
2018-11-04 14:01:06 -05:00
bc72093555
Add reindexing support based on table instead of column
2018-11-04 20:00:27 +01:00
b1283791ca
Allow JPA server to restore resources and link to them in a single
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transaction
2018-11-02 16:45:21 -04:00
3f6960d82b
Add multithreaded migrator tool
2018-11-01 05:42:51 -04:00
5849960a14
Add changelog
2018-10-31 05:52:15 -04:00
31ef4c68e1
Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0
2018-10-31 05:51:13 -04:00
8955a9e54d
Add threading to migrator
2018-10-31 05:50:50 -04:00
600f4585d1
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-10-30 15:23:00 -04:00
6b1ea5b989
Add tests for operation method binding
2018-10-30 15:22:39 -04:00
4cd86596f2
Merge branch 'master' into fhirterser-getvalues-enhancements
2018-10-29 09:55:34 -05:00
b66e01ce65
Allow plain server @Operation methods to declare a wildcard so that any
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opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
794d9145e9
Move query count tests to consolidate them, and avoid an accidental
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rewrite of existing indexes in some conditions
2018-10-24 17:54:58 -03:00
c669bba4bd
FhirTerser.getValues(...) enhancements are completed. Added changelog entry.
2018-10-24 12:08:17 -04:00
f601b212ad
Performance enhancements to the JPA server and better retry logic in
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$trigger-subscription
2018-10-20 14:47:37 -04:00
aa177c1421
Authorize batch operation in AuthorizationInterceptor
2018-10-19 09:45:56 -04:00
4e252063b8
Allow transactions and batches with transaction permission in
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AuthorizationInterceptor
2018-10-16 19:54:55 -04:00
ba6df6d55a
Handle unqualified ID in delete box for testpage overlay
2018-10-15 10:23:21 -04:00
9894980fe0
Changelog for #1093
2018-10-15 08:43:08 -04:00
16daa80afc
Add changelog entry
2018-10-15 08:38:16 -04:00
b44e96a5cd
Merge branch 'philips-3.6.0'
2018-10-15 08:37:00 -04:00
8b46257423
Add warm cache module
2018-10-14 09:32:07 -04:00
8bd185acf2
Rename $retrigger-subscription to $trigger-subscription based on
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Diederik's suggestion
2018-10-10 10:49:50 -04:00
b265c0281b
Expand search range when searching by date
2018-10-03 21:31:01 -04:00
12b23fbf23
Make JPA searches more efficient by prefetching a much smaller number of
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resources
2018-10-01 21:36:10 -04:00
87f90fec47
Correctly handle password promnpt in CLI
2018-10-01 11:59:47 -04:00
62d6771814
Use a select count query for summary count searches in JPA server
2018-09-29 21:58:14 -04:00
9f7e21fec6
Improve logging for expunge operation
2018-09-29 18:38:27 -04:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
002c4b3ff7
Add retrigger subscription operation
2018-09-27 20:03:01 -04:00
dc4c0809a4
Automatically detect suitable database drivers
2018-09-25 09:58:08 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
6e0a1dddd4
Fix formatting in changelog
2018-09-18 09:21:53 -04:00
942dfedbff
Doc updates for 3.5.0
2018-09-18 08:10:38 -04:00
a26779de81
FIx compile error
2018-09-11 08:42:46 -04:00
4852b0b60f
Work on migration
2018-09-08 07:14:43 +08:00
f5d567cd00
Work on migrator
2018-09-08 03:30:35 +08:00
8e91600746
Add changelog1
2018-09-01 14:40:31 +08:00
54c07263b6
Increase code lengths
2018-08-26 12:32:35 -04:00
b2741dab0d
Fix crash in mapping
2018-08-23 16:51:35 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
fd55aa292c
Allow interactive prompts for credentials from the user
2018-08-19 15:13:06 -04:00
125b2d06de
added $document change to changelist
2018-08-13 14:44:04 +02:00
f5d330dd03
Merge branch 'master' into 1053-lastupdate-shouldnt-apply-to-includes
2018-08-12 17:58:21 -04:00
080559027b
Credit for #1022
2018-08-12 17:56:42 -04:00
ea70683604
Merge branch 'subscription_cleanup' of github.com:jamesagnew/hapi-fhir into subscription_cleanup
2018-08-12 11:13:24 -04:00
0f6188b73c
Improve error message for unknown UUIDs in transaction bundles
2018-08-12 09:58:34 -04:00
159377ac16
Add details to ResponseHighlighterInterceptor
2018-08-11 13:46:34 -04:00
ea1f17762e
Don't apply last updated to includes
2018-08-11 12:20:07 -04:00
acfe442cf9
Add equivalency flag to reverse lookup
2018-08-11 09:55:28 -04:00
d07fd76d60
Dont keep resource bodies in the queue for JPA subscription delivery
2018-08-03 10:44:15 -04:00
bf63caf3fb
Credit for #965
2018-07-30 09:47:28 -04:00
d6293cf9b3
Merge branch 'client_enhancements'
2018-07-30 09:42:38 -04:00
17a976369b
Credit for #996
2018-07-30 09:15:28 -04:00
0f1724ac0a
Credit and a unit test for #912
2018-07-30 05:48:38 -04:00
518092cbd4
More updates
2018-07-29 17:10:26 -04:00
f03d6b7c22
Allow configuration of default page size in SimpleBundleProvider
2018-07-27 18:34:12 +07:00
d04db790a3
Try to fix permissions issues in travis
2018-07-27 08:39:22 +07:00
3c80238f0e
Ongoing work on interceptors
2018-07-24 17:22:21 +07:00
23083a9283
Improvements to client and SP indexing in JPA server
2018-07-23 17:37:49 +09:00
b4aa4c0e89
Add protection against HTML injection attacks
2018-07-19 08:56:22 -04:00
03e7b018a6
Add skeleton for the $process-message operation in JPA erver
2018-07-12 17:52:24 -04:00
3b794a4f39
Fix a crash when reindexing deleted resources
2018-07-02 09:17:48 -04:00
b929864873
Merge branch 'improve_jpa_indexes'
2018-07-01 12:08:03 -04:00
faaac4a2e8
Credit for #1018
2018-07-01 11:49:43 -04:00
495fd9f68e
Add support for patch in AuthorizationInterceptor
2018-07-01 11:46:11 -04:00
03fc593cb9
Fix broken test
2018-06-28 18:11:19 -04:00
050f9939ac
Merge branch 'master' into improve_jpa_indexes
2018-06-27 10:44:18 -04:00
bbf47454b3
Credit for #969
2018-06-27 10:43:15 -04:00
609cfc7f08
Credit for #1015
2018-06-27 10:36:50 -04:00
f0da7a33de
Fix expunge transaction boundaries
2018-06-25 10:22:49 -04:00
e5cb609f4d
Performance improvements
2018-06-24 20:02:27 -04:00
47633214e0
Credit for #1010
2018-06-24 15:12:47 -04:00
e9fffd3cdc
Allow indexing in custom search params to descend into contained
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resources
2018-06-22 11:22:07 -04:00
024394e5e5
Credit for #1000
2018-06-21 10:20:08 -04:00
218937e425
Several fixes
2018-06-20 05:53:32 -04:00
cc0e836680
Auth interceptor early checks ( #995 )
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* Validator fix
* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.
* FIx DSTU2 test that wasn't updated
* More test fixes
2018-06-10 17:48:20 -04:00
6d09f5025f
Credit for #974
2018-06-03 15:31:40 -04:00
987679483a
Version bumps
2018-06-03 15:29:10 -04:00
9db3be8536
Include implementation URL in generated capabilitystatement
2018-06-03 14:22:15 -04:00
a9cb4dae2f
Allow storage of messages
2018-06-01 07:07:24 -04:00
8027f75758
Remove versioneye from readme, as it has been discontinued
2018-06-01 06:28:22 -04:00
44c6292a45
Merge branch 'java9'
2018-05-31 21:56:58 -04:00
bb5d4110a2
Test fixes
2018-05-30 21:23:20 -04:00
d127a89047
Some test fixes
2018-05-30 11:01:43 -04:00
a52805e504
Work on JDK9 support
2018-05-30 05:45:08 -04:00
674005bab8
Site updates
2018-05-29 06:14:28 -04:00
cccd56243b
Website tweak
2018-05-28 21:47:29 -04:00
faf17edf89
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-28 11:16:52 -04:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
9a6594444a
Site tweak
2018-05-28 09:59:00 -04:00
8c53da2abf
Updated release notes.
2018-05-28 09:41:02 -04:00
a7eac969d9
Site enhancements for release
2018-05-28 08:53:36 -04:00
d74023925b
Credit for #910
2018-05-28 06:04:04 -04:00
67f21426cb
Disable content header on response for non-create operations
2018-05-25 07:28:01 -04:00
b0b98a9a28
Credit for #892
2018-05-24 06:06:01 -04:00
08542780a0
Credit for #886
2018-05-24 06:01:15 -04:00
1d11a5fe90
Credit for #880
2018-05-24 05:50:00 -04:00
a3687e446e
Correctly handle missing search params with new indexing infrastructure
2018-05-23 11:42:38 -04:00
0c5c347db7
FIx broken reindex process
2018-05-23 10:48:07 -04:00
2f2900e837
Improve indexing on JPA server in anticipation of a new indexing
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strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
e58779d484
Credit for #875
2018-05-23 06:39:40 -04:00
be86eb196b
Credit for #874
2018-05-23 06:32:52 -04:00
98d997c620
Add changelog and credit for #867
2018-05-23 06:21:00 -04:00
39163304ee
Credit for #857
2018-05-23 06:07:32 -04:00
4d93b78c24
Credit for #836
2018-05-22 08:44:17 -04:00
5a3eeb7b0d
CHangelog for #953
2018-05-21 19:07:42 -04:00
a2a81f9878
FIx #926 - Add homebew install instructions for CLI
2018-05-17 07:36:27 -04:00
ad4a545354
Credit for #937
2018-05-17 07:33:13 -04:00
c588e01a4d
Handle invalid paths in Consent resource
2018-05-16 21:45:23 -04:00
4fd868afae
Credit for #946 and add extensions to the CLI uploader
2018-05-16 19:32:12 -04:00
d29a9a7f96
AutohrizationInterceptor should correctly recognize type-level operation
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invocations
2018-05-15 16:14:10 -04:00
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
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* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
23a01b5f18
Add to download page
2018-05-12 19:40:39 -04:00
150f27a9ca
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-12 19:40:31 -04:00
3d762b984b
Sync to R4 definitions
2018-05-12 19:35:42 -04:00
9d24e8b040
Use HTTP 409 for conflict when two threds update the same resource
2018-05-11 17:41:07 -04:00
f1ba0016b2
Improve the error message thrown by JPA server
2018-05-11 17:03:48 -04:00
b17eebd8d2
Squashed commit of the following:
...
commit 2be11651c2b3bb5f9052f6b1082ba481a69c265f935938e92c43568a1f8de95894e6439393fb8f4f437f5051e420c51add4f7bf2b0a0e9adc73e75c9
2018-05-10 11:53:32 -04:00
14a070a47e
927 cli tooling is needed for creating and maintaining conceptmaps using csvs ( #934 )
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CLI tooling for import/export of ConceptMaps using CSVs has been implemented.
2018-05-10 11:12:45 -04:00
d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented ( #923 )
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The ConceptMap operation $translate has been implemented.
2018-05-10 10:52:56 -04:00
127a8389ac
Credit for #903
2018-05-04 08:55:41 -04:00
1522974a56
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-04-28 11:44:36 -04:00
83a5eedb29
Fix performance regression in DSTU3 validation
2018-04-28 11:42:59 -04:00
593a705365
Performance enhancements on the CapabilityStatement generator for JPA
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server
2018-04-28 11:06:42 -04:00
09b1f547d0
Add expunge
2018-04-24 15:11:00 -04:00
a21d0a7752
Add auth tester methods
2018-04-22 19:30:09 -04:00
591539cf13
Add expunge method
2018-04-22 18:34:56 -04:00
1ff50cb0db
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-04-17 18:26:39 -04:00
162069776a
Correctly handle encoding contained resources where some have user
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assigned IDs and some do not
2018-04-17 18:26:06 -04:00
4599c525a8
Fixed header nocache -> no-cache
2018-04-17 11:01:28 +02:00
d624556e18
Some updates to the loinc mapper
2018-04-06 09:50:18 -04:00
832558b411
Updates to handler
2018-04-06 09:12:52 -04:00
e31e1c029d
Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update
2018-04-02 09:13:27 -04:00
fe25d93fe6
Sync with master
2018-04-02 09:08:11 -04:00
4c0d5b49d9
Site updates
2018-03-30 08:28:10 -04:00
d9c167455e
Make sure we correctly clean up resources
2018-03-27 15:20:22 -04:00
fa28d505f3
Credit for #871
2018-03-27 06:14:05 -04:00
ca3e7fe38f
Credit for #877
2018-03-26 08:43:28 -04:00
a3a15ac9d8
Add test and credit for #819
2018-03-24 06:45:41 -04:00
6ba6f301e4
Merge pull request #840 from jamesdaily/patch-2
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Conformance Statement -> Capability Statement
2018-03-23 07:23:54 -04:00
d5a1c089b8
Credit for #864
2018-03-23 06:50:10 -04:00
352a9b8593
Credit for #581
2018-03-23 06:37:48 -04:00
37f12ac28b
Credit for #817
2018-03-23 06:35:53 -04:00
1ba00f6b11
Credit for #879
2018-03-22 06:52:30 -04:00
1689dc889e
Make server operation interceptor not perform superfluous calls for
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conditional and no-op operations
2018-03-22 06:52:30 -04:00
42498f3f87
Credit for #812
2018-03-19 06:25:49 -04:00
30c32cdc89
Credit for #806
2018-03-19 06:16:29 -04:00
78a69f654b
Credit for #800
2018-03-19 05:43:25 -04:00
83b1cf5b9f
Add credit for #798 and fix broken test
2018-03-15 07:30:32 -04:00
8c47e2f7be
Credit for #791
2018-03-15 06:48:41 -04:00
49192e5e48
Credit for #776
2018-03-12 06:42:22 -04:00
ea0b8992f4
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-12 06:31:56 -04:00
e75336f751
Credit for #786
2018-03-12 06:31:39 -04:00
1d92160822
Merge pull request #855 from patrick-werner/patch-2
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fixed package name hapi-fhir-validation on the http://hapifhir.io/download.html page.
2018-03-12 05:59:27 -03:00
d22670ddb5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-04 12:21:07 -05:00
2f7751a079
Move stopwatch into hapi-fhir-base and add timing into to client
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LoggingInterceptor
2018-03-04 12:13:18 -05:00
8bdca012d6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-04 11:04:07 -05:00
07290ae8a0
Sync to latest R4 code
2018-03-04 11:02:47 -05:00
0c0b9bd74b
Fix #814 - Don't create duplicate contained resources
2018-03-02 09:46:29 -05:00
0c52c38eda
Add credit for #868
2018-03-02 08:57:40 -05:00
a18303f117
Fix #872 - Include resource type in JPA uri search parameter criterias
2018-03-01 08:31:41 -05:00
84c72203b7
Add HashMapResourcePrvider
2018-02-25 13:16:02 -05:00
136455f312
Fix #863 - Allow custom search parameters to use multiple bases
2018-02-24 22:10:55 -05:00
6e47951220
Remove unneccesary log lines and clean up some documentation
2018-02-24 10:57:32 -05:00
3b2930f8e9
Prevent a crash in testpage overlay when deleting a resource
2018-02-23 15:24:20 -05:00
72cf22e3a9
Fix #854 - Process ID substitutions on URIs for JPA
2018-02-20 07:32:49 -05:00
e842881aa7
fixed package name haps-fhir-validation
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was hapi-fhir-validator, corrected to hapi-fhir-validation
closes #766
2018-02-20 11:59:23 +01:00
d18a0ea32f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-18 10:27:45 -05:00
3f1a0e81c7
Avoid endless reindex loop
2018-02-17 16:10:44 -05:00
222636baca
Docs updates
2018-02-17 14:32:42 -05:00
e89f8e5ba4
Fix crash with unique search parameter updates in JPA
2018-02-16 07:39:46 -05:00
e6253b7f22
Refresh search parameter cache asynchronously
2018-02-14 11:10:30 -05:00
80353e5d42
Better handle large search result deletion in JPA
2018-02-08 17:55:46 -05:00
b8c01a471a
Correctly credit John Grimes for #838 (oops!!!)
2018-02-03 19:21:55 -05:00
17b1ff727e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-03 15:48:09 -05:00
3cbf669007
Don't crash on startup if an invalid subscription is in the database
2018-02-03 15:47:48 -05:00
371be03b0f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-02 13:20:09 -05:00
0e2d55081f
Fix a crash when no count parameter supplied
2018-02-02 12:31:59 -05:00
351a2fc2f1
Fix #837 - Use non-legacy content-type for plain json and xml accept
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header
2018-02-02 06:43:19 -05:00
4af52c160f
Try to get HAPI building on JDK9
2018-01-31 06:41:24 -06:00
1c5a07b5a0
Fix #822 - Respect chained method params in a transaction search
2018-01-30 16:20:25 -06:00
8d468de551
Use R4 validator for DSTU3 validation
2018-01-30 11:16:04 -06:00
e52f582769
An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR.
2018-01-29 12:10:05 -06:00
a89c8d50c5
Fix #838 - Include JAXB dependencies explicitly
2018-01-29 12:05:37 -06:00
8e3e693d29
Conformance Statement -> Capability Statement
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Removed broken link to old conformance.html with link to capabilitysatement.html. Hope this is true that HAPI exports a capability statement now as of STU3?
Note - there are still references to Conformance Statement elsewhere within the documentation (such as doc_rest_operations.xml), but they contained coding / server behavior assertions that I was not comfortable modifying.
2018-01-29 10:37:04 -05:00
044b9f584a
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-01-28 14:02:53 -06:00
f976b7bf7e
Add new interceptor method which enabled interceptors to modify response
2018-01-28 14:01:20 -06:00
2e4f80d7a3
Fix #831 - Remove useless TagListParam annotation
2018-01-26 10:03:21 -05:00
5750cfd03c
Prevent double calling server interceptor methods under certain
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conditions
2018-01-26 07:44:13 -05:00
4e0e8fb8f8
Version bump a few dependencies
2018-01-26 06:22:06 -05:00
16038ece26
Version bump to 3.3.0-SNAPSHOT
2018-01-23 10:31:01 -05:00
4fd3e20d06
Remove duplicate resource body creation (Merge branch 'optimize_jpa')
2018-01-21 18:16:11 +08:00
4dcce4e582
Fix #832 - Correctly normalize text with Korean characters
2018-01-21 14:55:14 +08:00
3644151a69
Fix crash in JSON parser when parsing extensions on primitive elements
2018-01-18 09:07:23 +07:00
2c65f1c81b
Fix error on docs
2018-01-13 05:42:27 -05:00
6468ca474a
Verion bump to 3.2.0
2018-01-13 02:14:33 -05:00
01186ec8cb
Squashed commit of the following:
...
commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Jan 12 18:59:15 2018 -0500
Tests all passing
commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Jan 12 08:21:58 2018 -0500
Almost compiling
2018-01-12 18:59:43 -05:00
f6c9e3d0fe
Add multitenancy support for server
2018-01-11 11:14:54 -05:00
b0e196e5cf
Merge branch 'master' into optimize_jpa
2018-01-10 06:27:15 -05:00
9a72927dbc
Fix #808 - Use version from meta if not found in the resource ID
2018-01-08 14:07:27 -05:00
6fc88caa51
More work on optimizing JPA
2018-01-08 07:15:58 -05:00
377bae8c16
Allow interceptors to modify request contents
2018-01-06 14:27:32 -05:00
2f5ce64755
Start work on removing duplicate resource body
2018-01-04 14:45:17 -05:00
James Agnew
Ken Stevens
Ken Stevens
Diederik Muylwyk
patrick-werner
James Daily