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1622 Commits

Author SHA1 Message Date
jamesagnew 1b877ac03e Add licene headers 2018-11-01 09:15:51 -04:00
James Agnew 4315900ac0 Merge branch 'philips-3.6.0' 2018-11-01 09:15:27 -04:00
James Agnew 3bfdc61866 Fix a couple of test failures 2018-11-01 09:15:03 -04:00
jamesagnew 3f6960d82b Add multithreaded migrator tool 2018-11-01 05:42:51 -04:00
James Agnew c8834cd29a Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0 2018-10-31 17:19:28 -04:00
James Agnew 041a4c4018 Fix SearchCoordinator tests 2018-10-31 12:36:27 -04:00
jamesagnew 31ef4c68e1 Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0 2018-10-31 05:51:13 -04:00
jamesagnew 8955a9e54d Add threading to migrator 2018-10-31 05:50:50 -04:00
James Agnew 7acba90d15 Update search logic 2018-10-30 22:43:16 -04:00
Ken Stevens 3d008aee5d
Make test observation lists thread safe (#1105) 
* Initial refactoring to move database matcher out into its own class

* MAJOR REFOACTOR: Pulled indexing code out of BaseHapiFhirDao into a new class ResourceIndexedSearchParams

* made observations lists thread safe to stop intermittent test failures
 2018-10-29 15:56:47 -04:00
James Agnew b66e01ce65 Allow plain server @Operation methods to declare a wildcard so that any 
opeeration invocations will be direected to them
 2018-10-29 10:36:32 -04:00
James Agnew 794d9145e9 Move query count tests to consolidate them, and avoid an accidental 
rewrite of existing indexes in some conditions
 2018-10-24 17:54:58 -03:00
James Agnew f601b212ad Performance enhancements to the JPA server and better retry logic in 
$trigger-subscription
 2018-10-20 14:47:37 -04:00
James Agnew c8db7fe035 Add a test 2018-10-18 15:12:22 -04:00
James Agnew e00ff641b2 Increase visibility of two methods needed by the HSPC sandbox 2018-10-18 10:17:55 -04:00
James Agnew da2763d8c8 Merge branch 'master' into philips-3.6.0 2018-10-17 22:38:27 -04:00
James Agnew f571fc4f92 Rename DAO registry 2018-10-17 22:37:43 -04:00
James Agnew b78aaea415 FIx up subscription processing 2018-10-17 21:23:52 -04:00
James Agnew de76f37845 Try to fix an intermittent test failure 2018-10-17 15:49:26 -04:00
James Agnew 99cd4ce5f7 Allow for _total parameter 2018-10-17 09:47:35 -04:00
James Agnew 4b5dcce021 Add a bit of logging to subscription triggering 2018-10-17 08:32:57 -04:00
James Agnew b220154e9c Fix error in retriggeer logic 2018-10-17 07:02:51 -04:00
jamesagnew aa1f624132 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-10-17 05:53:46 -04:00
James Agnew 8130700d68 One more optimization to the subscription retriggering logic 2018-10-17 05:53:07 -04:00
jamesagnew d129d43635 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-10-16 21:51:50 -04:00
James Agnew 2c05d9c5db Test cleanup 2018-10-16 21:51:33 -04:00
jamesagnew e2dfaa517f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-10-16 20:38:21 -04:00
James Agnew 388bda1fec Avoid transaction isolation level not supported by Oracle 2018-10-16 20:31:43 -04:00
jamesagnew 47a5763fb5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-10-16 20:25:12 -04:00
James Agnew 5d7142a972 Avoid intermittent test failures 2018-10-16 20:23:32 -04:00
jamesagnew 1c1f601332 License header updates 2018-10-16 19:56:52 -04:00
James Agnew 0fbe897ca4 Add named beans to JPA config 2018-10-16 17:24:17 -04:00
James Agnew 755060f91e Allow subscription triggering on a block of resources 2018-10-16 15:29:41 -04:00
James Agnew ba6df6d55a Handle unqualified ID in delete box for testpage overlay 2018-10-15 10:23:21 -04:00
jamesagnew 93c545c42c License header updates 2018-10-15 09:54:00 -04:00
James Agnew 483c9bff3a Auto detect whether the appropriate dialect is selected 2018-10-15 09:53:04 -04:00
James Agnew b44e96a5cd Merge branch 'philips-3.6.0' 2018-10-15 08:37:00 -04:00
James Agnew b75226914d Fix intermittent test failure 2018-10-15 08:19:23 -04:00
James Agnew 6dc2dc1d6f One more test fix 2018-10-15 07:11:10 -04:00
James Agnew 796b12e33e Fix bug in $everything processing 2018-10-15 05:44:53 -04:00
James Agnew 8b46257423 Add warm cache module 2018-10-14 09:32:07 -04:00
James Agnew 51a69f0dc9 Fixes to migrator and count logic 2018-10-13 12:02:19 -04:00
James Agnew a9fcfaf79a Add a test 2018-10-10 19:11:57 -04:00
James Agnew 0837daecc2 One more recurring failure fix 2018-10-10 13:36:50 -04:00
James Agnew e47cff2712 Fix an intermitttent test failure 2018-10-10 11:57:30 -04:00
James Agnew 8bd185acf2 Rename $retrigger-subscription to $trigger-subscription based on 
Diederik's suggestion
 2018-10-10 10:49:50 -04:00
James Agnew 34bb70af65 Add validator test and allow migrator to be used for 3_3_0 2018-10-08 21:04:17 -04:00
James Agnew 34e943b49b Fix bad counts when multiple parameters match 2018-10-05 13:11:09 -04:00
James Agnew 9c27e8e6dd Fix an issue with the spring boot build 2018-10-04 15:12:21 -04:00
jamesagnew 970c48ec37 A bit more test cleanup 2018-10-04 13:29:09 -04:00
James Agnew 8452f46b9b More work on intermittent test failures 2018-10-04 13:16:50 -04:00
James Agnew da3b4d4071 Try to fix an intermittent test failure 2018-10-04 13:07:52 -04:00
James Agnew 2464599a68 One more test fix 2018-10-04 09:36:10 -04:00
James Agnew b265c0281b Expand search range when searching by date 2018-10-03 21:31:01 -04:00
James Agnew 6ce9120132 Fix test failure in boot 2018-10-03 15:39:19 -04:00
James Agnew 5d5ee78873 API cleanup following JPA search performance enhancements 2018-10-03 07:43:01 -04:00
James Agnew 9d1e8aa246 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-10-01 21:36:52 -04:00
James Agnew 12b23fbf23 Make JPA searches more efficient by prefetching a much smaller number of 
resources
 2018-10-01 21:36:10 -04:00
jamesagnew caf7c8b2e1 Header updates 2018-10-01 17:04:50 -04:00
James Agnew d7abeb513b Remove class that is failing the build and not used 2018-09-30 13:31:06 -04:00
James Agnew 62d6771814 Use a select count query for summary count searches in JPA server 2018-09-29 21:58:14 -04:00
James Agnew 9f7e21fec6 Improve logging for expunge operation 2018-09-29 18:38:27 -04:00
James Agnew 3e445faf47 Squashed commit of the following: 
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sat Sep 29 13:47:22 2018 -0400

    Shrink validation resources

commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 22:45:28 2018 -0400

    Updates to get R4 working

commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 09:02:13 2018 -0400

    Ongoing work on gettign R4 working

commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 05:21:01 2018 -0400

    More work on sync

commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:29 2018 -0400

    Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4

commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:19 2018 -0400

    Fix compile error

commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:04:23 2018 -0400

    Merge branch 'master' into sync_r4

commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:01:42 2018 -0400

    Keep working on getting R4 building

commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Sep 25 13:11:27 2018 -0400

    Ongoing work to get R4 working

commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 08:15:36 2018 -0400

    Work on getting build working

commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 05:16:53 2018 -0400

    Merge branch 'master' into sync_r4

commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Sep 17 05:30:39 2018 -0400

    Work on R4 sync

commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Sep 16 10:19:00 2018 -0400

    Work on sync

commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 17:28:28 2018 -0400

    Work on R$ sync

commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 08:33:07 2018 -0400

    Work on R4
 2018-09-29 13:48:35 -04:00
James Agnew 002c4b3ff7 Add retrigger subscription operation 2018-09-27 20:03:01 -04:00
James Agnew 706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
jamesagnew 3bfce11d2c Add OSGI dependency for commons-text 2018-09-17 16:06:11 -04:00
jamesagnew a5de3f2ffd Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-09-17 05:31:23 -04:00
James Agnew bb7fca19a3 Work on migrator 2018-09-14 08:34:39 -04:00
jamesagnew 321e88c811 License header updates 2018-09-14 05:25:07 -04:00
James Agnew 640ee544c8 Clean up hamcrest dependency 2018-09-11 09:05:39 -04:00
James Agnew 9bf183f5b1 Fix depenedency on activation API 2018-09-11 08:53:45 -04:00
James Agnew 45dac5c5a8 A couple more test fixes 2018-09-11 08:47:00 -04:00
James Agnew a26779de81 FIx compile error 2018-09-11 08:42:46 -04:00
James Agnew 261f2c73ab Merge branch 'jpa_migration' 2018-09-11 08:09:15 -04:00
James Agnew 94eb12aca3 Add a retry to database expunge routines 2018-09-11 07:59:11 -04:00
jamesagnew 0e75c8ed39 A few test fixes 2018-09-10 08:50:12 -04:00
James Agnew 29f324f8de
Merge branch 'master' into master 2018-09-07 23:25:49 -04:00
James Agnew daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
James Agnew f5d567cd00 Work on migrator 2018-09-08 03:30:35 +08:00
James Agnew 979b1287d0 Add ability to suspend scheduled reindexer 2018-09-05 16:22:09 +08:00
James Agnew 77305eb570 Work on migrator 2018-09-04 10:32:08 +08:00
James Agnew 0f7c4219cb Merge branch 'master' into jpa_migration 2018-09-02 06:05:11 +08:00
James Agnew bc270584d2 Work on terminology expansion 2018-09-01 22:56:42 +08:00
James Agnew a4d8df3c6d Test fixes 2018-09-01 17:19:21 +08:00
James Agnew f4a21eadda Fix this issue 2018-09-01 14:38:52 +08:00
James Agnew fee0166800 Work on removing validstion cache 2018-08-28 05:26:06 -04:00
jamesagnew d0761ea604 Add a test 2018-08-27 08:58:10 -04:00
James Agnew 07cfed14b8 Work on migrator 2018-08-27 08:21:20 -04:00
James Agnew 54c07263b6 Increase code lengths 2018-08-26 12:32:35 -04:00
James Agnew b2741dab0d Fix crash in mapping 2018-08-23 16:51:35 -04:00
James Agnew 731658eef8 Remove accidental double initialization 2018-08-23 09:32:10 -04:00
James Agnew f8c03a3c37 Prefetch subscriptions on app startup 2018-08-22 12:48:03 -04:00
James Agnew bbe4de2842 Support for LOINC externally defined answerlists added 2018-08-20 09:38:44 -04:00
jamesagnew 8ee701c934 License header update 2018-08-19 20:21:45 -04:00
jamesagnew fef105cfdb More intermittent test failure fixes 2018-08-19 16:51:04 -04:00
jamesagnew 77e35f5a56 Test fixes 2018-08-19 16:12:35 -04:00
James Agnew 6511545d25 Don't re-activate already active identical subscriptions 2018-08-17 11:56:33 -04:00
James Agnew ddc4464552 Make constant public 2018-08-13 13:52:47 -04:00
James Agnew 9b61a8cdbe Make constant public 2018-08-13 13:52:08 -04:00
James Agnew bc1ee1f9dc Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-08-13 11:54:36 -04:00