6ad0dffd00
build fix ( #3058 )
...
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
2021-10-07 16:38:42 -04:00
383f76982a
Fix broken link in yaml
2021-10-07 15:12:18 -04:00
3c80dba90e
[3040] finish implementation ( #3049 )
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* [3040] finish implementation
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* [3040] throw exception if link exists
* [3040] add matchResult parameter/update documentation
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-10-07 17:42:21 +00:00
a474e88ed4
issue-2397 implementing the mdm expansion on everything and searches ( #3044 )
...
* issue-2397 implementing the mdm expansion on everything and searches
* issue-2397 code cleanup and removal of test code
* issue-2397 some tests
* issue-2397 changelog added
* issue-2397 review fixes
* issue-2397 updated change log with example and fixed failing tests
* issue-2397 test fixing
* issue-2397 fixing test
* issue-2397 review fix
* issue 2397 fixing changelog file
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-10-07 10:46:23 -04:00
59afbe086c
Allow canonical references to support treating given base URLs as local. ( #3050 )
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* Add failling test, works on #2843
* Partial hack to get this working
* Move implementation into pre-processing
* Add changelog
* Move implementation
* Minify Test
* Remove fixmes
* Tidying
* Ensure this only operates on STU versions which support canonical
2021-10-05 11:09:49 -04:00
d320b78ae1
Improve synthea ingest performance ( #3033 )
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* Improve synthea ingest performance
* Tweaks
* Fix param splitting
* Update to test
* Add changelog
* Test fix
* Add some runtime checks
* Remove useless test
* Test fix
2021-10-04 05:46:06 -04:00
eca725afa4
Improve versioned URL support for ValueSet expansion ( #2994 )
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* Add test
* Test fixes
* Work on expansion errors
* Fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fixes
* Work on fix
* Test fixes
* Test fixes
* Test fix
* Cleanup
* Test fixes
* Remove accidental commit
* Test fixes
* Version bump
* Add changelog
* Fixes
* Test fix
* Fix conflicts
2021-10-03 19:47:23 -04:00
95e853bdf7
Improve parallel model scanning ( #3046 )
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* Improve parallel model scanning
* Add changelog
* Resolve fixme
* Test fix
2021-10-03 19:40:24 -04:00
6f36a0aab3
Merge branch 'master' into remove-parallel-non-gets
2021-09-28 10:17:38 -04:00
ad05a5ec09
Merge branch 'master' into remove-parallel-non-gets
2021-09-28 09:43:01 -04:00
58a2f23c0d
Merge branch 'master' into jr-20210922-narrowing-interceptor
2021-09-28 07:41:39 -04:00
591286a9cc
Add changelog
2021-09-27 15:37:59 -04:00
d121f6eff1
Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition
2021-09-27 15:10:19 -04:00
b86f596c80
[3020] add sample response in documentation
2021-09-27 15:09:44 -04:00
c5cacacb23
[3020] fix changelog
2021-09-24 16:55:03 -04:00
d067586607
[3020] add documentation/changelog
2021-09-24 14:49:07 -04:00
4a53d10c78
Merge branch 'master' into jr-20210922-narrowing-interceptor
2021-09-24 14:39:10 -04:00
8c145d1212
Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition
2021-09-24 13:01:38 -04:00
a40a27bd46
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology
2021-09-24 12:58:44 -04:00
4c28b1b552
fix npe
2021-09-24 09:46:48 -04:00
4ab60e2f9b
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology
2021-09-24 08:59:15 -04:00
53c7476dae
hapi storage ( #3024 )
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* first pass moving core storage classes to storage-api
* move term service apis
* nearly done
* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor
* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor
* create new SearchConstants class to store platform independent search constants
* move a couple of subscription services
* move transaction processor adapter to storage
* version bump
* move searchparam
* fix test
* fix compile includes
* fix text
* fix docs
2021-09-23 22:04:46 -04:00
91d9101785
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology
2021-09-23 13:45:28 -04:00
d1e9c23c13
Remove loinc.xml file from application. Now it required as input for loinc upload.
2021-09-23 13:43:27 -04:00
4f00b88512
Merge branch 'master' into jr-20210922-narrowing-interceptor
2021-09-23 12:28:16 -04:00
712a6a798f
clean up
2021-09-23 12:27:32 -04:00
9c8fd26692
Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning
2021-09-23 11:56:44 -04:00
751c5d0d05
Implement revision suggestions. Add changelog.
2021-09-23 11:55:50 -04:00
ad9e0f1c9a
Merge branch 'master' into 3014-prevent-delete-expunge-cascade
2021-09-23 09:33:04 -04:00
2489702ab9
[3020] add documentation for $partition-management-read-partition
2021-09-22 16:08:11 -04:00
e52d11b5ba
search narrowing interceptor responds with 403 Forbidden instead of creating an impossible query
2021-09-22 14:00:12 -04:00
26ac649946
changelog
2021-09-22 11:11:10 -04:00
9a18422173
fix review
2021-09-22 11:09:50 -04:00
b8ef2f6763
Add changes
2021-09-21 15:25:46 -04:00
7379dee3d8
Merge branch 'master' into add-device-to-patient-compartment
2021-09-21 14:38:39 -04:00
645386c999
Apply suggestions from code review
...
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2021-09-21 12:26:21 -04:00
fa96c5b8be
Merge branch 'master' into jr-20210921-mssql-data-migration
2021-09-21 12:22:56 -04:00
060791aeb4
hapi-fhir-storage-api ( #3006 )
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* rename hapi-fhir-jpaserver-migrate to hapi-fhir-sql-migrate and move hapi-tasks into jpaserver-persistence
* rename hapi-fhir-jpaserver-api to hapi-fhir-storage-api
* move bulk import apis
* create hapi-fhir-jpa
* create hapi-fhir-jpa
* move CircularQueueCaptureQueriesListener to japi-fhir-jpa
* move mdm logs to storage-api
* move gziputil to storage-api
* move quartz scheduling to hapi-fhir-jpa
* move default subscription channel factory to storage-api
* consolidated batch constants
* correct accidental Logs change
* remove dependency of cdr-api on cdr-persistence
* fix javadoc
* pom descriptions
* review feedback
2021-09-21 15:36:08 +00:00
b6c8658f8c
Fix MS SQLServer database migration
2021-09-21 10:42:59 -04:00
f1f9c672ad
3110 zh disallow unknown extensions ( #3009 )
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* Added allowKnownExtensionsOnly() method such which calls setAnyExtensionsAllowed() to set myAnyExtensionsAllowed to false and modified changelogs to add entry for this ticket.
* Modified docs to remove description for .allowAnyExtensions() and included it within a description for .allowKnownExtensionsOnly() and also added test for .allowKnownExtensionsOnly()
* refactored allowKnownExtensionsOnly() to rejectUnknownExtensions()
2021-09-20 15:40:56 -04:00
624ad3fcab
Merge branch 'master' into jr-20210914-oidc-support-in-swagger
2021-09-17 17:09:19 -04:00
3b1bf7aa09
Merge branch 'master' into 2849_add_new_mdm_param
2021-09-17 13:27:09 -04:00
8bb9aca8df
Merge branch 'master' into 2849_add_new_mdm_param
2021-09-17 10:18:24 -06:00
cb374042f5
Merge branch 'jr-20210914-oidc-support-in-swagger' of github.com:hapifhir/hapi-fhir into jr-20210914-oidc-support-in-swagger
2021-09-17 11:42:34 -04:00
a866feb730
changelog
2021-09-17 11:41:51 -04:00
115056800c
Merge branch 'master' into issue-2995-valuesetcomposeincludeversion-is-not-set-when-uploading-terminology
2021-09-17 11:32:18 -04:00
a56c85f780
Eliminate Search Coordinator ThreadPool ( #2991 )
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* Add test
* Remove search coordinator thread pool
* Add changelog
* Add docs
* Test fixes
* Test fixes
* Test fixes
* Test fix
2021-09-16 16:37:34 +00:00
3d3bab5102
merge master into branch
2021-09-16 11:02:17 -04:00
5bbe69cd31
Move into data class
2021-09-15 21:17:03 -04:00
2435d77089
Add changelog
2021-09-15 14:46:33 -04:00
9d982c5e08
Merge branch 'master' into conditional-bug
2021-09-14 08:51:58 -04:00
75a16f3b13
Add docs and changelog
2021-09-14 01:54:59 -04:00
3ccadd636e
Merge branch 'master' into 2958-consistent-error-handling
2021-09-13 19:38:57 -04:00
67cf058318
Add changelog
2021-09-13 19:29:49 -04:00
4aa1329e11
Fix up changelog
2021-09-13 13:13:28 -04:00
5554431146
Avoid dead SearchParameter links in CapabilityStatement ( #2790 )
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* Avoid dead SearchParameter links in CapabilityStatement
* Resolve fixmes
* Build fix
* Test fix
* Test fix
* Test fix
* Work on metadata
* Fixes
* Test fixes
* Test fix
* Test fix
* Test fixes
* Test fix
* Work on test fixes
* Test fixes
* Test fixes
* Test fixes
* Test fix
* Fix params
* Resolve fixme
* Adjust changelogs
* Version bump to 5.6.0-PRE7
* Add license header
* Bump version to 5.6.0-PRE5-SNAPSHOT
2021-09-11 18:27:18 -04:00
a02a9e0254
Merge branch 'master' into 2958-consistent-error-handling
2021-09-10 17:02:31 -07:00
77845d66f7
Improved code formatting
2021-09-10 10:54:33 -07:00
86ab77446e
Merge branch 'master' into 2975-attribution
2021-09-10 13:05:38 -04:00
ab3af7af2a
Merge branch 'master' into 2973-CLI_option_help_fails
2021-09-10 11:54:37 -04:00
30834d13ad
Add attribution.
2021-09-10 10:28:54 -04:00
d6d862015b
Address concerns in review for issue 2975
2021-09-10 15:46:27 +02:00
1af7ed6223
[2973] update changelog
2021-09-10 09:40:35 -04:00
032a9155f0
Merge branch 'master' of https://github.com/hapifhir/hapi-fhir into issue_2975
2021-09-10 09:11:06 +02:00
836948010f
Fixes issue ( #2958 ) where Procedure?patient caused inconsistent results and ensured that such requests gave http 400
2021-09-09 16:10:09 -07:00
ed325e9e11
Enable multiple hosts in ElasticsearchHibernatePropertiesBuilder
2021-09-10 00:14:21 +02:00
e6be758d65
Merge branch 'master' into 2973-CLI_option_help_fails
2021-09-09 17:15:20 -04:00
10f0b0877c
[2973] fix "help {command}"
2021-09-09 17:14:51 -04:00
b3e24078ae
Add changelog
2021-09-09 11:01:11 -04:00
0ccd71faf8
Merge pull request #2963 from hapifhir/custom-elastic-index
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Custom elastic index
2021-09-08 14:29:58 -04:00
fbf6b35d2e
Merge branch 'master' into custom-elastic-index
2021-09-08 08:49:26 -04:00
f04cf02be7
Merge branch 'master' into issue-2901-npe-in-bundle-transaction
2021-09-08 08:45:47 -04:00
34075911ce
Merge branch 'master' into jr-20210831-contained-chained-search
2021-09-07 17:28:24 -04:00
d02e7e0041
changelog
2021-09-07 14:25:06 -04:00
3ec47cb0ba
Bump version as we break the localcontainerentitymanagerfactory bean constructors args
2021-09-07 13:58:22 -04:00
eabe3e7c74
Merge branch 'master' into custom-elastic-index
2021-09-07 13:56:44 -04:00
ecd93c9e8a
Add changelog
2021-09-07 13:54:28 -04:00
35aaa98431
Merge branch 'master' into 2849_add_new_mdm_param
2021-09-07 11:27:49 -04:00
346e29920a
Issue 2927 convert mdm clear to spring batch ( #2929 )
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* initial roughout of mdm clear batch job
* still roughing out classes
* finished first draft of reader
* most tests passing now
* all tests pass. now FIXMEs
* FIXMEs done. Time for regression.
* fix test
* changelog and docs
* fix test
* pre-review cleanup
* version bump
* move spring autowire deps for cdr
* move spring autowire deps for cdr
* finally got beans working phew
* rearrange method calls so persistence module can perform clear operation on its own
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
* review feedback
* Remove inheritance
* fix beans
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2021-09-03 14:58:19 -04:00
1bd1b36668
Merge branch 'master' into 2849_add_new_mdm_param
2021-09-03 11:04:20 -04:00
dc69bfc729
Add changelog
2021-09-02 23:07:07 -04:00
ee65a24260
Merge branch 'master' into 2849_add_new_mdm_param
2021-09-02 17:42:41 -04:00
26ff15f939
Revert "Fix search of :not modifier"
2021-09-02 14:33:30 -04:00
1a7b101d03
Merge branch 'master' into issue-2901-npe-in-bundle-transaction
2021-09-02 10:13:04 -04:00
4c90ffe975
issue-2901 adding changelog
2021-09-02 09:47:55 -04:00
0286eb5278
issue-2901 updated some documentation and added support for autocreated placeholder / autoversioned references at paths when in transactios and have not been created yet
2021-09-02 09:15:39 -04:00
feb34e9bf5
Merge branch 'master' into patch-2
2021-09-02 08:42:41 -04:00
b1d192637d
Merge pull request #2928 from hapifhir/ft-search-with-not-modifier
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Fix search of :not modifier
2021-09-02 08:41:16 -04:00
f5de2da6ba
Corrected typo in docs - Plain Providers
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It was "plan providers" before
2021-09-02 14:52:38 +05:30
3e288f1dde
Merge branch 'master' into rel_5_5_1
2021-09-01 18:16:27 -04:00
ee956929f9
Merge branch 'master' into add-attribution-for-gotoguy
2021-09-01 16:42:19 -04:00
ae2c752c55
Add attribution for 2793
2021-09-01 15:54:28 -04:00
453ef7ec1c
Merge branch 'master' into 2935_Search_with_trailing_percent_sign
2021-09-01 11:33:26 -04:00
44b0d3e9e7
Fixed $lookup with displayLanguage caching issue ( #2932 )
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* Fixed $lookup with displayLanguage caching issue
* Added changelog and optimized the test cases
2021-08-31 22:18:40 +00:00
a1fbeeacaa
[2935] Escape "%" in like expression
2021-08-31 15:11:06 -04:00
e1272a3825
Bump version of HAPI-FHIR
2021-08-31 11:43:17 -04:00
993b2a2f47
Backport changelog
2021-08-31 11:41:17 -04:00
7fc6a2f16b
Add changelog
2021-08-31 11:39:01 -04:00
cc2e968595
Add version.yaml
2021-08-31 11:04:20 -04:00
37c88392b4
Add changelog
2021-08-31 10:53:14 -04:00
TipzCM
Tadgh
katiesmilecdr
Tadgh
James Agnew
Jason Roberts
katie_smilecdr
jmarchionatto
Ken Stevens
juan.marchionatto
Jimmy Deng
JasonRoberts-smile
Johnson Lu
Jaison B
jdar8
Justin Dar
Dušan Markovič
Nick Goupinets
leif stawnyczy
Sidharth Ramesh
Frank Tao