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1629 Commits

Author SHA1 Message Date
jamesagnew 2f4ac42edb One more test fix 2018-02-18 09:17:04 -05:00
jamesagnew 3f1a0e81c7 Avoid endless reindex loop 2018-02-17 16:10:44 -05:00
jamesagnew e89f8e5ba4 Fix crash with unique search parameter updates in JPA 2018-02-16 07:39:46 -05:00
James Agnew e6253b7f22 Refresh search parameter cache asynchronously 2018-02-14 11:10:30 -05:00
James Agnew 2edc9910e5 Add a test 2018-02-09 10:29:20 -05:00
jamesagnew a395e48cd4 Don't crash when a multitenant server has a request for / 2018-02-04 18:44:37 -05:00
jamesagnew fb327c60cd FIx spring boot issue 2018-02-04 15:04:45 -05:00
James Agnew 17b1ff727e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-03 15:48:09 -05:00
James Agnew 3cbf669007 Don't crash on startup if an invalid subscription is in the database 2018-02-03 15:47:48 -05:00
jamesagnew 1d541c1588 Formatting issues 2018-02-02 14:03:53 -05:00
jamesagnew 371be03b0f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-02 13:20:09 -05:00
James Agnew efc812bf56 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-02 12:32:13 -05:00
James Agnew 0e2d55081f Fix a crash when no count parameter supplied 2018-02-02 12:31:59 -05:00
jamesagnew 351a2fc2f1 Fix #837 - Use non-legacy content-type for plain json and xml accept 
header
 2018-02-02 06:43:19 -05:00
jamesagnew 3f1ef0e7f6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-01 06:33:00 -05:00
jamesagnew 17edf5e727 FIx some license headers 2018-02-01 06:31:21 -05:00
James Agnew b61887e841 Improve performance of base64 validation 2018-01-30 17:37:12 -06:00
James Agnew 1c5a07b5a0 Fix #822 - Respect chained method params in a transaction search 2018-01-30 16:20:25 -06:00
James Agnew e52f582769 An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR. 2018-01-29 12:10:05 -06:00
James Agnew 044b9f584a Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-28 14:02:53 -06:00
James Agnew f976b7bf7e Add new interceptor method which enabled interceptors to modify response 2018-01-28 14:01:20 -06:00
Simon Janic 97a1ccac3d Merge remote-tracking branch 'upstream/master' 2018-01-28 16:43:32 +01:00
jamesagnew 2e4f80d7a3 Fix #831 - Remove useless TagListParam annotation 2018-01-26 10:03:21 -05:00
jamesagnew c081f7c15d More rule fixes 2018-01-23 11:33:31 -05:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 4dcce4e582 Fix #832 - Correctly normalize text with Korean characters 2018-01-21 14:55:14 +08:00
James Agnew 3644151a69 Fix crash in JSON parser when parsing extensions on primitive elements 2018-01-18 09:07:23 +07:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
James Agnew 01186ec8cb Squashed commit of the following: 
commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 18:59:15 2018 -0500

    Tests all passing

commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 08:21:58 2018 -0500

    Almost compiling
 2018-01-12 18:59:43 -05:00
James Agnew f6c9e3d0fe Add multitenancy support for server 2018-01-11 11:14:54 -05:00
jamesagnew 0352d48720 Bump copyright message to 2018 2018-01-08 13:52:15 -05:00
jamesagnew 7e2459fbdc FIx up tests 2018-01-08 08:18:34 -05:00
James Agnew 3e8fc0c89c Merge branch 'dstu2_custom_structs' 2017-12-12 21:47:05 -05:00
James Agnew d00c7dbea8 Giant breakthrough in fixing sporadic test failures! 2017-12-05 12:08:56 -05:00
Clayton Bodendein b81e89604c Related to issue #799, adding DSTU2_1 and R4 contexts to the FhirContext#(FhirVersionEnum, Collection<Class<? extends IBaseResource>>) method 2017-11-29 15:50:10 -06:00
Simon Janic 8427fc4547 Merge remote-tracking branch 'upstream/master' 2017-11-26 14:23:33 +01:00
Simon Janic f426b0679c Refactored the meta extensions, so it reuses the existing logic that is 
used for encoding and parsing extensions on resources.
 2017-11-26 14:22:41 +01:00
James Agnew 3e296f9d1b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-11-25 17:53:01 -05:00
James Agnew 6afe6804db Fix #796 - Correctly escape spaces in generated URLs 2017-11-25 17:52:12 -05:00
jamesagnew 5b909b4746 Version bump to 3.2.0-SNAPSHOT 2017-11-24 13:32:47 -05:00
jamesagnew 42dd34252d Version bump to 3.1.0 2017-11-23 13:27:21 -05:00
James Agnew 6293bb112b
Merge pull request #769 from InfiniteLoop90/issue-768-exclude-stacktrace-jax-rs 
Fixes issue #768 to conditionally include stacktraces for DataFormatExceptions in OperationOutcomes when using AbstractJaxRsProviders
 2017-11-22 20:00:44 -05:00
jamesagnew 059265a041 Test cleanup 2017-11-22 19:15:27 -05:00
James Agnew 4042a3a353 Prevent accidental deletion of deeply nested resources in JPA server 2017-11-22 18:17:35 -05:00
Simon Marco Janic 46fcceb9c6 [(master)] Merge remote-tracking branch 'upstream/master' 2017-11-21 11:15:50 +01:00
Simon Marco Janic 0077215b19 [(master)] Added support for references in meta 2017-11-21 10:38:14 +01:00
James Agnew 60b6c3745b Add test for #794 2017-11-20 12:03:45 -05:00
michael.i.calderero 874390df61 treat reference param values as opaque and not an url when the param is 
chained
 2017-11-15 15:03:53 -06:00
michael.i.calderero b277693106 ensure to use resourceType properly when it is explicitly provided in a 
chained reference parameter
 2017-11-14 19:00:28 -06:00
James Agnew 8dbcd29c8d Dont reuse ports in tests 2017-11-08 17:12:06 -05:00
James Agnew 59f4177a59 Fix #750 - Elements are not preserved in page requests 2017-11-06 19:49:50 -05:00
Simon Marco Janic f0477ac807 [(master)] Fixed faulty test 2017-11-06 13:38:25 +01:00
Simon Marco Janic ee3d540607 [(master)] Remove duplicated code by Git 2017-11-06 13:00:47 +01:00
Simon Marco Janic 78744ac9e4 [(master)] Merge remote-tracking branch 'origin/master' 
# Conflicts:
#	hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/codesystems/DeviceStatusEnumFactory.java
 2017-11-06 12:59:44 +01:00
Simon Marco Janic bb767d7f1c [(master)] Added missing import. 2017-11-06 12:59:13 +01:00
Simon Marco Janic 1c1098a2b7 [(master)] Added check for sub-extensions. 2017-11-06 12:32:11 +01:00
Simon Marco Janic b4032f4e8c [(master)] Added support for extensions in Meta resource 2017-11-06 12:32:07 +01:00
Simon Marco Janic bdb15f57e0 [(master)] Added check for sub-extensions. 2017-11-06 11:06:42 +01:00
James bde05c8b4d Fix broken DeviceStatus enums 2017-11-05 19:20:49 -05:00
James Agnew 75bfb6af1b Add support for Binary X-Security-Context header in server 2017-11-02 11:38:43 -04:00
James Agnew 256d541dda
Merge pull request #736 from malcolmm83/master 
Fix for Binary.securityContext is not being encoded #734
 2017-11-01 15:37:43 -04:00
Simon Marco Janic 53674db357 [(master)] Added support for extensions in Meta resource 2017-11-01 11:37:51 +01:00
James 0fb74e5d42 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-10-31 20:22:59 -04:00
James Agnew 1d06c9165b Remove more windows line ending dependencies 2017-10-31 17:55:16 -04:00
James 5a5933f232 Remove dependencies on StAX on Android 2017-10-30 16:41:31 -04:00
James Agnew 7c1ab11b02 Clean up places where CORS headers are declared - Related to #718 2017-10-30 16:37:47 -04:00
James Agnew 64e120cef8 Custom structs in progress 2017-10-30 16:19:09 -04:00
James 15ba0dff03 Clean up email subscription type 2017-10-26 06:02:12 -04:00
Clayton Bodendein d0e747d6ec Fixed issue #768 in a different way by wrapping the DataFormatException as an InvalidRequestException so that it still gets sent as a 400 response but now DataFormatException stacktraces can now be conditionally sent based on the ExceptionHandlingInterceptor#setReturnStackTracesForExceptionTypes(Class<?>...) configuration 2017-10-22 22:20:48 -05:00
James Agnew 16e19a9fed Fix #720 - Failure to parse custom type 2017-10-21 13:47:03 -04:00
James Agnew 175f9dfc5a Remove dependency on StAX for XML parsing in DSTU2 Xhtml type 2017-10-16 17:22:50 -04:00
James Agnew 9ca85b4cf3 Re-enable errorprone on standard hapi fhir build. woohoo! 2017-10-15 11:27:30 -04:00
James Agnew 0a2525e1e0 Remove some duplicate classes 2017-10-14 15:42:55 -04:00
James 31fb1236a1 Reuse bundle ID when returning query cache results 2017-10-11 06:05:14 -04:00
James 432c511a30 Add license 2017-10-06 15:41:40 -04:00
James ce720f5601 Add support for Cache-Control header in JPA server and client 2017-10-05 13:38:53 -04:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
Malcolm McRoberts 511f4939c8 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 
Changes to encoding for Binary and unit test.
 2017-09-25 00:02:10 -04:00
Malcolm McRoberts a57003808d Added unit test for encoding Binary with securityContext, and fixed encoding in JasonParser 2017-09-24 23:55:27 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James Agnew fc7144ee03 Work on JPA optimization 2017-09-17 20:05:28 -04:00
James Agnew e94d639d29 Refactor websockets to use queuing mechanism 2017-09-14 21:29:57 -05:00
James Agnew 836d4d051b Work on IG Pack uploading 2017-09-07 20:33:19 -07:00
James Agnew 2aa538bd56 Add ability for system to track unique constraints 2017-09-05 17:33:19 -07:00
James Agnew cae21f4898 Update syntax highlighter to not use tables 2017-08-28 10:26:07 -04:00
Eugene Lubarsky 5d3a985ae1 ResponseHighlighter - added performance logging to the browser console 2017-08-17 12:55:18 +10:00
James f04b080d50 Honour headers in rest hook subscribers 2017-08-15 07:42:18 -04:00
James 94953e8a5c Merge in latest work on subscriptions and GraphQL 2017-08-14 22:00:59 -04:00
James b9494c179a Squashed commit of the following: 
commit fa508e27b2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:38:12 2017 -0400

    Fix android tests

commit dea567e960
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:25:28 2017 -0400

    Still trying to get tests passing

commit 6bbfec381f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:00:59 2017 -0400

    Work on getting tests passing

commit 5e0a7672b7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 18:12:58 2017 -0400

    Work on GraphQL integration

commit 1c88fd154d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 15:19:41 2017 -0400

    Upgrade subscriptions to use interceptors across the board

commit de5c01c00d
Author: James <jamesagnew@gmail.com>
Date:   Mon Aug 14 09:09:32 2017 -0400

    Work on subscription

commit 387d504098
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 06:19:25 2017 -0400

    Work on subscriptions

commit 95a607d155
Merge: d851de7ffd b9dbd64101
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:22 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit d851de7ffd
Merge: 5413b276af 209752cd63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:00 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit b9dbd64101
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:40:35 2017 -0400

    Work on subscriptions

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 5413b276af
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:36:25 2017 -0400

    Work on graph QL support

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-14 21:35:56 -04:00
James be5c5ebecd Merge in HAPI 3.0.0 working branch! 
Squashed commit of the following:

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-13 14:39:47 -04:00
James 356d9acaf7 Revert one change from #706 2017-08-13 11:04:24 -04:00
James Agnew 72be7ab795 Merge pull request #706 from InfiniteLoop90/master 
Fixes #705 - Client correctly validates the server's conformance statement FHIR version
 2017-08-13 11:03:52 -04:00
James Agnew dedd3d635b Merge pull request #695 from SRiviere/#622 
#622 Extension lost on ID datatype or extension of type primiti…
 2017-08-13 10:03:58 -04:00
James Agnew 6efafe62f1 Merge pull request #688 from CarthageKing/bugfix-issue659 
Correctly serialize baseurl/FooResource references
 2017-08-12 14:51:46 -04:00
Clayton Bodendein 9a32202d03 Also related to issue #705, added an explicit check for DSTU2.1 as well when the client checks the server's conformance statement FHIR version 2017-08-06 21:27:05 -05:00
Clayton Bodendein 1743d108b6 Fixed #705 by making RestfulClientFactory check for the correct FHIR version strings when the client code tries to validate the server's conformance statement. Also fixed the corresponding unit tests. 2017-08-06 14:03:15 -05:00
James Agnew 274e218494 Fix #696: Corresctly handle negative numbers 2017-07-26 16:59:35 -04:00
Sebastien Riviere 0fd5a44b5e Fixed #622 Extension lost on ID datatype or extension of type primitive during parsing 2017-07-24 13:43:55 +02:00
James 42a81f4a85 Fix some unit tests 2017-07-24 06:06:27 -04:00
James f7d4296046 Tweak to #683 2017-07-14 06:16:41 -04:00