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4568 Commits

Author SHA1 Message Date
James Agnew 5dccf93506 Fix broken test 2019-03-06 17:15:30 -05:00
jamesagnew 490e4cb94d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-03-06 16:14:40 -05:00
jamesagnew 64facdab0a Disabling test logging 2019-03-06 16:14:32 -05:00
James Agnew f8b8f2d1b0 Move process-message to the correct level 2019-03-06 16:12:43 -05:00
Ken Stevens a2d4c93922 Subscription matcher transactions (#1229) 
* fix bug in ResourceIndexSearchParamQuantity
Move transaction boundary around SubscriptionMatcherInterceptor so it can be overridden in subclass
Lots of CRLF changes from a mvn -P DIST

* FIXME
 2019-03-06 16:12:04 -05:00
James Agnew fd401165a9 Fix an occassional failure in the stress test 2019-03-06 09:32:37 -05:00
James Agnew 9bc0f6784d
Search paging timeout with 1500 < n < 2000 results (#1221) 
* Avoid paging links when offset is artificially set very high

* Ongoing fixes

* Adding logging and clean up transaction processing

* Add changelog

* More work on queries

* Keep working on getting tests passing

* More test fixes

* More work on tests

* More test works

* One more test attempt

* Ongoing fixes

* One more change

* FIxes to search algorithm

* Add changelog

* Clean up for review

* Fixed NPE in token matcher when system is not null and value is null

* test opposite (null system not null value)

* added null protection to all matchers

* Address review comments

* Address broken test

* Trying to resolve DB ordering issues
 2019-03-06 05:45:05 -05:00
James Agnew 4138832071 Add a test 2019-03-01 14:03:14 -05:00
James Agnew 3972e17e62 Add "is trusted" property to server exceptions 2019-03-01 13:58:13 -05:00
James Agnew 7896887f67 Updates to transaction processing 2019-02-28 12:23:48 -05:00
jamesagnew 6e41f90bf9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-02-27 16:49:20 -05:00
James Agnew 48c10bddc5
Narrative Generator refactoring (#1219) 
* Starting work on this

* Working on narrative templates

* Work on new narrative system

* Account for some failing tests due to refactoring of narrative mode

* Another test fix

* More test fixes

* One more test fix

* Work on searches

* Address review comments
 2019-02-27 14:59:57 -05:00
jamesagnew aef5989477 Header updates 2019-02-25 20:47:30 -05:00
James Agnew 94f9ffa977 Avoid paging links when offset is artificially set very high 2019-02-25 20:44:22 -05:00
James Agnew fb06664f70 Clean up paging query 2019-02-25 19:05:19 -05:00
James Agnew 820a3d2296 Collapse conditional UPDATES as well in JPA transactions 2019-02-22 13:49:38 -05:00
James Agnew 43c07077be Automatically remove duplicate conditional creates in JPA 2019-02-22 12:57:07 -05:00
James Agnew 89b08cd627
Improve SQL IN(..) queries (#1214) 
* First attempt, probably has compile issues

* Fix qualified searches

* Another test fix

* More test fixes

* Add changelog

* Two more fixes

* Revert SQL logging
 2019-02-20 16:38:51 -05:00
James Agnew 28b4b812ac Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-02-20 15:07:08 -05:00
James Agnew e7b7ba1a6d Add caching test 2019-02-20 11:18:02 -05:00
Ken Stevens 01568ab0b5 Fix test race condition. 2019-02-19 21:14:11 -05:00
James Agnew 72c4726328 Tweaks to the way that subscriptions are serialized 2019-02-17 19:17:51 -05:00
James Agnew bd4eb36eda
Merge pull request #1211 from jamesagnew/queue-thread-support 
changes needed to support different number of consumers in matching vs delivery
 2019-02-17 18:39:32 -05:00
Ken Stevens 3af0bc7206 changes needed to support different number of consumers in matching vs delivery 2019-02-17 15:23:01 -05:00
James Agnew fb5d94383b
Merge pull request #1210 from jamesagnew/ja_allow_multiple_canonical_subs_extensions 
Allow canonical subscription to hold multiple extensions with the same
 2019-02-16 17:11:51 -05:00
James Agnew 14e04085ae Try for a test fix and a bit of cleanup 2019-02-16 16:11:33 -05:00
James Agnew c6fcb4fcbf Allow canonical subscription to hold multiple extensions with the same 
URL
 2019-02-16 15:28:39 -05:00
James Agnew 87ed00a002 Add ability to generate named parametrrs in a version independent way 2019-02-15 16:27:16 -05:00
jamesagnew 1311ded7de Fix compile issue 2019-02-15 14:55:25 -05:00
James Agnew c0970ed46d Fix typo in test 2019-02-15 14:30:38 -05:00
James Agnew 09920ad545 Reduce thread contention during tests 2019-02-15 14:18:34 -05:00
James Agnew a35f30b18e
Merge pull request #1208 from jamesagnew/reuse-subscription-channels 
Reuse subscription channels
 2019-02-15 13:42:54 -05:00
James Agnew c4dd06ad0c Make it easier to add tables with migrator tools 2019-02-15 13:27:07 -05:00
James Agnew 4a6345d7c4 Improve command chaining in migrator tool 2019-02-15 12:54:41 -05:00
James Agnew 514ace5981 Changelog for #1209 2019-02-15 09:58:53 -05:00
James Agnew ddeeb9206a
Merge pull request #1209 from jamesagnew/remove_analytics_tracking 
removed google analytics script fixes #1207
 2019-02-15 09:56:47 -05:00
James Agnew 485335e975 Allow terminology service to work without having Lucene enabled for 
simple ValueSet expansions
 2019-02-14 20:47:28 -05:00
Ken Stevens ffc5966aa3 Merge branch 'master' into reuse-subscription-channels 
# Conflicts:
#	src/changes/changes.xml
 2019-02-14 19:42:00 -05:00
Ken Stevens badbde7e4a SubscriptionRegistry re-uses channel and handlers if channel type didn't change when subscription is updated 2019-02-14 19:38:31 -05:00
James Agnew 10c348d44f Tweak to elements parametr support 2019-02-14 19:30:10 -05:00
Ken Stevens 508e15956e added a couple of subscription tests and un@Ignored another 2019-02-14 15:30:25 -05:00
patrick-werner 22bb1c8761 removed google analytics script fixes #1207 2019-02-14 18:40:55 +01:00
James Agnew 5aadf91a83
Merge pull request #1205 from jamesagnew/subscription-interceptor-change 
no subs check interceptor calls on DELETE
 2019-02-13 22:25:43 -05:00
Ken Stevens 435f57335d sonar 2019-02-13 20:50:04 -05:00
Ken Stevens 7b3fedc642 sonar 2019-02-13 20:41:11 -05:00
Ken Stevens 455761f9b3 fix npe 2019-02-13 16:54:38 -05:00
Ken Stevens 68171ba950 don't call SUBSCRIPTION_BEFORE_PERSISTED_RESOURCE_CHECKED and SUBSCRIPTION_AFTER_PERSISTED_RESOURCE_CHECKED for DELETE operations (since we don't currently match subscriptions for DELETE operations) 2019-02-12 14:25:36 -05:00
James Agnew c2de9c5434
Merge pull request #1179 from tadgh/allow-3-to-2-specimen 
Allow specimen to be converted from STU3 -> STU2
 2019-02-11 10:49:17 -05:00
James Agnew b3fd1b91cf Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-02-11 09:05:24 -05:00
James Agnew 96ad875d3a Credit for #1204 2019-02-11 09:04:57 -05:00