e8f5451cc9
Fix a few issues found by FindBugs
2015-09-01 07:05:27 -04:00
08b19f55ad
Merge pull request #213 from SingingTree/javadocs_reference_github
...
Update Javadocs to reference Github docs
2015-08-31 16:18:38 -04:00
a9f978a8a2
Udate to latest DSTU2 definitions
2015-08-31 08:20:24 -04:00
eb7b405419
Update Javadocs to reference Github docs
...
Several Javadoc comments still reference the old Sourceforge based
documentation. These have been updated to point to the Github based
documentation where relevant, or removed in one case where the Github docs
do not appear to have such a section.
2015-08-31 18:46:05 +12:00
98a0d5a07a
Delete old deprecated classes
2015-08-28 18:19:16 -04:00
eaa2519696
iAdd some tests
2015-08-28 18:00:32 -04:00
110abf7cb2
Switch from Cobertura to JaCoCo
2015-08-28 17:06:56 -04:00
bd13b53099
Fix #212 - Dont accept invalid IDs but do accept IDs starting with a
...
number
2015-08-28 15:36:56 -04:00
073fa47807
Add support for _include:recurse behaviour
2015-08-27 19:44:51 -04:00
1577859340
Fix build
2015-08-24 18:46:07 -04:00
2733812535
Fix build
2015-08-24 18:39:49 -04:00
11c5ab7892
More auto qualify resource references
2015-08-24 18:33:28 -04:00
83a57f8e7c
Auto qualify resource IDs
2015-08-24 18:21:34 -04:00
a5a18b9a14
DateTimeDt now returns an instance of itself when the TimeZone is set.
2015-08-24 16:48:00 -04:00
df4d371edc
Add profile and security params for generic search
2015-08-24 15:23:28 -04:00
bec43b3fdc
Fix tests
2015-08-24 08:29:02 -04:00
60339d6f93
Fix #209 - _revinclude results from JPA server should have a Bundle.entry.search.mode of "include" and not "match". Thanks to Josh Mandel for reporting!
2015-08-23 22:25:25 -04:00
11376024fa
Fixing test related to summary and elements mode
2015-08-23 21:51:46 -04:00
44ac164eca
Work on #125 - Support _summary and _elements
2015-08-23 13:29:57 -04:00
7645c240f4
Get instance validator working across FHIR versions
2015-08-20 15:27:24 -04:00
ddc66d3ed0
Add support for $validate-code in JPA server
2015-08-20 14:27:19 -04:00
11f5aeebd9
Clean up the build and hopefully close #206
2015-08-19 11:49:00 -04:00
6941f92090
Fix #207 - Confusing error message parsing invalid contained resources
2015-08-17 20:46:56 -04:00
c2fba2ce21
More work on interceptors
2015-08-17 18:35:51 -04:00
bb1e8b9ddd
Last commit broke cobertura
2015-08-17 15:54:00 -04:00
ac564a54d6
Documentation cleanup
2015-08-17 07:57:20 -04:00
330dbde983
Add new interceptor hook for auditing
2015-08-16 22:09:01 -04:00
89a7750bf4
Start working on action interceptor framework
2015-08-14 17:05:07 -04:00
c859c9da91
Add withId(long) to fluent client read() method
2015-08-14 15:43:35 -04:00
2766af2693
Update definitions and correctly handle exceptions in
...
incomingRequestPreProcessed method in server interceptors
2015-08-13 16:59:10 -04:00
b28dba3540
Merge branch 'dstu2_final' of github.com:jamesagnew/hapi-fhir into dstu2_final
2015-08-09 17:20:30 -04:00
12735a1446
Handle contact search params better
2015-08-09 17:17:53 -04:00
24634880db
Update for QA version of DSTU2
2015-08-09 11:18:04 -04:00
b36e4e5841
Merge branch 'master' into dstu2_final
2015-08-06 18:07:34 -04:00
c838d651dd
Fix fluent client search call so that it can be mocked with Mockito
2015-08-06 18:06:32 -04:00
43dd081098
Fix compile issues and keep working on android build
2015-08-06 13:13:03 -04:00
af9c8faf89
Don't crash if resrouce references being parsed have unexpected child
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elements
2015-08-06 10:50:36 -04:00
137a2cf7ec
Enhancements to Android build
2015-08-06 10:15:58 -04:00
63defc2f30
Merge branch 'master' into dstu2_final
2015-08-05 13:29:20 -04:00
fd91ce76ce
Fix #192 - Correctly unescape search parameters in the server when they
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have a trailing comma or an escaped backslash
2015-08-05 12:57:04 -04:00
5b09a3d2b6
Add trasnaction BATCH support to JPA
2015-07-31 09:29:25 -04:00
d9d192cc04
Merge branch 'master' into dstu2_final
2015-07-30 22:34:45 -04:00
ab2129d651
Implements support for _tag in JPA server and client
2015-07-30 07:47:37 -04:00
75798cf9fe
Use HttpServletRequest.getContextPath to get the context path
2015-07-27 11:19:29 -04:00
e457366ffa
Start work on upgrading DSTU2 to QA version
2015-07-25 11:56:47 -04:00
f1d7fb7b8a
Cleanup
2015-07-21 11:46:16 -04:00
f2bf199ac7
Fix build and sync RI
2015-07-21 10:58:02 -04:00
56a4c1b04b
Add serialization support and fix build regression
2015-07-21 09:45:53 -04:00
48917684fd
Finish off #152
2015-07-21 08:28:40 -04:00
99e92d8fca
Operations in server generated conformance statement should only appear once per name, since the name needs to be unique.
2015-07-19 19:17:39 -04:00
a774a654ce
Property document OperationDefinitions generated automatically by server
2015-07-19 11:10:46 -04:00
a35d20b999
Fix #158 - Don't encode empty tags
2015-07-18 17:35:54 -04:00
5a450227b2
Fix unit test issues
2015-07-18 17:05:10 -04:00
3bff020c54
Add exception pre processing method to server interceptors
2015-07-18 16:31:32 -04:00
626f4677e7
Fix #198 - Sorting should only sort on the individual parameter searched on, not all params of the same type
2015-07-18 15:29:24 -04:00
57ee1fe220
Fix unit tests failing due to OperationDefinition changes
2015-07-18 14:43:59 -04:00
41283d4ed4
Add $get-resource-counts operation to JPA server
2015-07-17 18:28:47 -04:00
ddbe79cb86
For #126 - Don't use BoundCodeableConcept for empty enums
2015-07-17 08:34:44 -04:00
3bdf846a3d
Improve error messages in JPA server
2015-07-16 22:47:41 -04:00
2fc0d4c7a2
Clean up exception handling in server, and add QuestionnaireAnswers validation for JPA server
2015-07-16 20:16:51 -04:00
3bba0c0425
Add validation module for QuestionnaireAnswers
2015-07-15 17:28:12 -04:00
818c40498c
Site updates
2015-07-15 08:37:56 -04:00
901c5c29cf
Version bunp for 1.2
2015-07-14 18:08:06 -04:00
3fa7c54526
Tag 1.1 release
2015-07-13 10:31:02 -04:00
350028be73
Implement meta operations in client
2015-07-10 17:36:55 -04:00
c22aa14d29
Clean up the validation framework and integrate the QuestionnaireAnswers
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validator
2015-07-10 16:05:40 -04:00
d5b99c2c10
Fix broken build
2015-07-08 22:27:49 -04:00
3bfecb27a8
Update RI structures
2015-07-08 17:57:53 -04:00
373859c36c
Fix regression
2015-07-07 18:18:11 -04:00
ad0c51f600
Rename DAO classes per request from Ismael Sarmento Jr
2015-07-07 17:41:59 -04:00
d20b7e2c94
A few cleanups to allow example resources to commit cleanly
2015-07-07 17:27:10 -04:00
0f76ba81e1
Fix #196 - Support deep chained parameters in JPA. Also add support for
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Prefer header.
2015-07-07 10:41:07 -04:00
8a86ad5e76
Wide sweeping changes to get RI structures working in server mode
2015-07-05 17:14:15 -04:00
8b65a9aedf
Indicate support for conditional create/update/delete in DSTU2 server conformance statement
2015-06-25 22:22:19 -04:00
af33664e7c
Support _count on JPA search in transaction
2015-06-25 10:32:03 -04:00
75f5b47762
Doc cleanup
2015-06-24 17:42:46 -04:00
dd9f80ecb1
Clean up warnings
2015-06-24 12:26:40 -04:00
da2d4d0497
Stlye issues only
2015-06-24 08:22:05 -04:00
fed9f4d61e
Add unit tests and update healthconnex server
2015-06-23 08:29:13 -04:00
70d4abdf06
Server should include lastUpdated in search responses if one is supplied
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by the implementation. Also automatically include in this in JPA server
2015-06-22 16:27:08 -04:00
685fa6d164
Code and site cleanup
2015-06-21 22:10:13 -04:00
b48843a128
More work on test coverage
2015-06-21 12:16:33 -04:00
591f16fa9d
Fix cobertura
2015-06-21 00:56:23 -04:00
e9ac63688c
Finally have travis and coveralls working!
2015-06-21 00:48:10 -04:00
71fbfe5214
Add consolidated test package and clean up tests for cobertura
2015-06-20 14:23:34 -04:00
e8c75c5a45
Add support for _lastUpdated parameter in client and JPA server
2015-06-19 17:46:14 -04:00
12f3cfcab8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-18 17:49:54 -04:00
269106074d
DSTU2 server should indicate conformance for transaction operation
2015-06-18 17:49:33 -04:00
d0cffbf8c7
Revert change to make IdDt#isLocal() return true if the base is "urn:". This caused all kinds of regressions and was obviously a bad idea.
2015-06-18 09:00:56 -04:00
0f2d742872
Documentation updates
2015-06-17 19:56:57 -04:00
9cf2b18d5d
Fix broken unit test
2015-06-17 16:17:16 -04:00
a27acb9b79
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-17 14:32:42 -04:00
39dd48bc41
Automatically populate Bundle.entry.base when encoding a bunde
2015-06-17 14:32:11 -04:00
1bde9ac5b3
Fully implement content type negotiation, and add checkstyle
2015-06-17 13:51:05 -04:00
6f7ef96b97
Support $validate operation correctly in DSTU2 clients and in testpage
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overlay
2015-06-16 11:56:30 -04:00
81bfc28147
Support $validate operatioh in DSTU2 client
2015-06-16 08:05:27 -04:00
7086508ead
Start working on DSTU2 support for testpage overlay
2015-06-15 08:33:18 -04:00
0cc53ca742
Documentation updates
2015-06-12 17:50:01 -04:00
a46890b0d2
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-12 11:09:55 -04:00
9b280e0ab7
Remove dependency on servlet-api in client
2015-06-12 10:02:52 -04:00
0479a48a41
Correctly handle Bundle.entry.base
2015-06-12 08:27:03 -04:00
6077114b32
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-11 14:24:58 -04:00
f40955c2cb
Remove dependency on ServletInputStream
2015-06-11 14:24:40 -04:00
4ab8871a41
POM cleanup
2015-06-09 08:22:46 -04:00
fc4d2ae7e2
Work on conformance generation for operations
2015-06-04 22:23:57 -04:00
4d9b2c6e8c
Fix #175 - Correctly parse ™
2015-06-04 20:24:47 -04:00
f9a9232926
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-04 12:20:17 -04:00
62b0707b36
Support attributes longer than 512kb.
2015-06-04 12:19:10 -04:00
9b97fb0e97
Enable validation ($validate) operation in DSTU2 style
2015-06-04 10:56:13 -04:00
8c3c8e215f
Fix #178 - Allow links in Bundle.entry when parsing old Bundle in DSTU2 mode
2015-06-04 08:19:17 -04:00
e5b402cb14
Allow raw access to resource body in create/update/etc
2015-06-01 09:21:41 -04:00
064f113133
Clean up resource parameter handling
2015-05-31 19:38:01 -04:00
4a5e13b301
Work on synchronizing the HL7.org structures
2015-05-31 16:52:31 -04:00
3280375486
Fix $everything operation in generic client if the server returns JSON
2015-05-29 17:50:18 -04:00
11d22b1b1f
Site updates and clean up RI IdType
2015-05-28 08:35:49 -04:00
834710df9b
Work on #152 - Improved validation framework to enable failing if unexpected elements are found
2015-05-26 21:03:49 -04:00
e22f52ca44
Add paging methods to generic client for DSTU2 bundle
2015-05-25 07:59:06 -04:00
ec3c94a823
Update RI structures
2015-05-22 17:32:36 -04:00
ff6884223e
Fix #170 - Better addXXX methods in structures. Also don't incorrectly
...
include IDs in client create requests, and add better getLink methods
to the bew Bundle resource structure.
2015-05-21 15:18:46 -04:00
30c7027616
Fix #149 - Use correct base URL on subsequent pages
2015-05-20 17:29:27 -04:00
0f9d4b8059
Add interceptor for syntax highlighting
2015-05-15 18:59:54 -04:00
7517709edb
Fix #149 - Respect server address strategy for link-self on search
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results
2015-05-15 17:51:06 -04:00
e9c09c6ba0
Encode meta element even if it only contains tags
2015-05-09 18:01:53 -04:00
2ce921f39b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-08 18:59:00 -04:00
3e382ab760
More work on RI structs
2015-05-08 18:49:31 -04:00
eeba5812cb
Finalize 1.0 release
2015-05-08 17:15:50 -04:00
0f2976358f
Version bump to 1.1-SNAPSHOT with more loggging
2015-05-08 08:54:40 -04:00
a731557516
Merge branch 'hl7org_structs' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-07 21:28:31 -04:00
8e81b069af
Merge
2015-05-07 21:24:52 -04:00
dfbe2415d1
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-07 21:24:34 -04:00
924ebf062e
Preparing for 1.0 release
2015-05-07 20:51:37 -04:00
fcbe969967
Disable broken unit test in JPA server for now
2015-05-06 10:24:27 -04:00
3a5d2e892a
About to commit to SVN as well
2015-05-05 18:16:22 -04:00
05cccdb6e5
More work on structs
2015-05-05 13:16:10 -04:00
496333b5e0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-04 11:08:37 -07:00
7585256037
Add some logging
2015-05-04 11:08:01 -07:00
ab6cb24f5a
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-04 10:05:57 -07:00
0af3518772
Merge pull request #171 from joel-costigliola/master
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Fix #169 - Add an exception for HTTP 403 Forbidden error
2015-05-04 10:04:27 -07:00
ab7b1c3a4f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-02 14:38:14 -07:00
ae81ad29f6
Unit tests all passing
2015-05-02 14:04:43 -07:00
aa2f2cee96
Merge branch 'hl7org_structs' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-01 13:52:24 -07:00
880ab84ce8
More work on structs
2015-05-01 12:27:56 -07:00
3fe60c3f1b
Start syncing changes with SVN
2015-05-01 13:07:47 -04:00
cb9716f885
More work to get build working
2015-05-01 11:44:06 -04:00
61f2838b3a
More work getting unit tests passing
2015-05-01 11:16:41 -04:00
629bc5b7d3
HL7org unit tests all pass
2015-05-01 11:09:29 -04:00
9755ae8d35
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-05-01 10:24:15 -04:00
20a16d62fe
More work on bugfixing #164 - Support for :missing
2015-05-01 08:20:01 -04:00
00f83ee3a7
Fix #169 - Add an exception for HTTP 403 Forbidden error
2015-05-02 00:19:04 +12:00
3fc6958ff2
Work on #164 - Add support for :missing in JPA server
2015-04-30 19:26:26 -04:00
5f4a966077
Work on #164 - Improve error messages when an invalid or missing content
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type header is detected for creat/update requests
2015-04-30 12:04:51 -04:00
5cf5bb0473
Fix #167 - Rename "myEntityManagerFactory" to just
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"entityManagerFactory" as this is the default expected in some spots in
Spring
2015-04-30 09:36:14 -04:00
cb7d94841e
Fix #168 - Client conformance check should use any registered client
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interceptors
2015-04-29 20:02:01 -04:00
b68ce95b3f
Fix #36 - Allow removal of extensions
2015-04-28 13:58:22 -04:00
3a1cc48048
Fix broken unit test and allow invalid dates in web testewr UI
2015-04-28 10:33:14 -04:00
5e8fe01af1
Allow fluent client users to execute a transaction using a string as
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input
2015-04-27 13:19:40 -04:00
f8dee1f47a
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-04-24 09:05:34 -04:00
3d00800212
Fix #163 - Parser doesn't populate resource ID's Resource type
2015-04-23 22:19:04 -04:00
e6d087b1f6
Add docs to explain #161
2015-04-23 21:46:49 -04:00
7db7097e25
Fix #162 - Allow web testing UI to configure the client
2015-04-23 17:52:51 -04:00
8072ca1bc1
Do HTTP post for tester UI create/updates
2015-04-23 16:57:50 -04:00
5bcd6a4751
Don't include an mpty text element in Bundles being returned by the server
2015-04-23 08:04:05 -04:00
e18433d709
Trying to remove empty text node
2015-04-22 17:45:00 -04:00
37ed62f863
Add advanced JPA example
2015-04-22 10:08:33 -04:00
147305b70e
More work on getting HL7org structs working
2015-04-22 07:46:33 -04:00
b222b76611
Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs
...
Conflicts:
hapi-fhir-android/pom.xml
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/JsonParser.java
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/XmlParser.java
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServerUtils.java
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java
hapi-fhir-testpage-overlay/.gitignore
src/changes/changes.xml
2015-04-21 13:30:58 -04:00
91167733c6
Don't return a Content-Location header when returning the new bundle
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format
2015-04-20 17:32:20 -04:00
4f1d2a3c75
Merging cleanup from local branch with commit from #153
2015-04-20 15:28:20 -04:00
02070affbf
Merge pull request #153 from mochaholic/master
...
Read server interceptors from the spring context.
2015-04-20 14:47:24 -04:00
b42737262b
Work on HL7org structs
2015-04-20 07:31:45 -04:00
eddcf5f4d8
Merge branch 'hl7org_structs' of github.com:jamesagnew/hapi-fhir into hl7org_structs
2015-04-15 16:37:35 -04:00
3db46c2db2
More work on hl7org strfucts
2015-04-15 16:37:24 -04:00
de1effbf52
#157 - removed published from dstu1 bundle, as it should only be present for bundleEntry
2015-04-15 11:10:08 -04:00
41c215efe2
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-04-15 10:57:43 -04:00
ddd68b8d57
Credit for #155
2015-04-15 10:57:15 -04:00
7f7ff5c936
Merge pull request #155 from wdebeau1/master
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#154 - FhirTerser now uses the complete path to a resource when creating...
2015-04-15 10:48:52 -04:00
cfff2006ec
More work on HL7org structs
2015-04-15 07:49:18 -04:00
2edc7eadab
Work on HL7.org structs
2015-04-13 08:32:49 -04:00
b6f2b57ed9
Work on HL7 structs
2015-04-10 08:02:05 -04:00
8c873ef023
Remove hard coded persistence context name
2015-04-09 21:44:18 -04:00
6918bb6b4b
#154 - FhirTerser now uses the complete path to a resource when creating ResourceReferenceInfo entries
2015-04-09 14:06:14 -04:00
3003b5e17b
Update to the latest upstream.
2015-04-09 07:25:09 -06:00
e4b5943314
Merge remote-tracking branch 'origin/master'
...
Conflicts:
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/JsonParser.java
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/XmlParser.java
2015-04-09 07:24:40 -06:00
11507ef97c
Fix #148 - Add _count support to everything operation
2015-04-05 14:53:15 -04:00
8c37973a78
Fix #147 - no duplicates in 'everything' operation
2015-04-04 23:36:04 -04:00
461fdb50ce
Fix #143 and fix #146 - Issues with resource references for non contained resources when parsing a DSTU2 bundle, and issues encoding contained resources when encoding JSON
2015-04-03 15:42:02 -04:00
29140691d1
Add a bit of documentation to note the inclusion of #138
2015-04-02 13:06:17 -04:00
94af375e4d
Fix #116 - Preserve _include links across pages
2015-04-02 12:49:45 -04:00
e63323ca5c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-04-01 21:46:49 -04:00
065b87c31e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-04-01 16:29:04 -04:00
25a9c254e3
Sync to DSTU2 again
2015-04-01 16:03:54 -04:00
243b9a71a4
#138 - rewrote to always use super's address base, then fixup the host name and protocol
2015-03-31 12:53:40 -04:00
d111d19071
#138 - if x-forwarded-proto is set, use that
2015-03-30 17:23:50 -04:00
dbc944f4fc
#138 - AddressStrategy that can cope with addresses proxied by Apache http server
2015-03-30 12:20:47 -04:00
d6e8b66301
Add Google Errorprone compiler to build
2015-03-28 19:28:34 -04:00
690bcb4b68
Add support for a NarrativeModeEnum parameter to interact with
...
_narrative in the request URL
2015-03-27 16:52:48 -04:00
c484425c78
Update license file generation and gitignores
2015-03-26 11:57:07 -04:00
986094617a
Fix #135 - Remove Eclipse and IntelliJ artifacts from version control
2015-03-26 07:56:24 -04:00
f9b8432d65
Searching in JPA server with no search parameters returns deleted
...
resources when it should exclude them
2015-03-24 18:39:19 -04:00
0c8f50737f
Sync to latest version of DSTU2
2015-03-24 17:19:34 -04:00
jamesagnew
Bryce Van Dyk
miantorno
Joel Costigliola
b.debeaubien
mochaholic