honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
8,565 Commits 680 Branches 130 Tags 1.2 GiB
Commit Graph

8565 Commits

Author SHA1 Message Date
Tadgh 4c154951e2 Fully fleshed test, partial refactor 2021-08-10 14:56:57 -04:00
Tadgh 29545d9adc
Merge pull request #2879 from hapifhir/mail_cleanup 
fix SimpleJavaMail configuration username and password handling
 2021-08-10 10:48:56 -04:00
Vadim Karantayer f68040aae9 fix SimpleJavaMail configuration username and password handling 2021-08-10 10:45:30 -04:00
Tadgh 3edb59475c
Merge pull request #2877 from hapifhir/2876-npe-mdm-resource-util 
NPE in MdmResourceUtil
 2021-08-10 08:13:19 -04:00
Tadgh 97f88202eb Fix Changelog typo 2021-08-10 08:12:54 -04:00
Tadgh 1dfaf73066 Merge branch 'master' into 2876-npe-mdm-resource-util 2021-08-09 19:21:58 -04:00
Tadgh bfd9dffdbe Allow jira field in changelog 2021-08-09 19:09:40 -04:00
Tadgh 293bbe2a40
Merge pull request #2878 from hapifhir/backport-mdm-resource-util-npe 
Backport mdm resource util npe
 2021-08-09 18:53:50 -04:00
Tadgh 2d203302da Remove changelog as it will eventually create a duplicate 2021-08-09 16:20:46 -04:00
Tadgh 966e451587 Backport fix 2021-08-09 16:19:38 -04:00
Tadgh d5fe1eeef7 Move test out of IT 2021-08-09 16:13:47 -04:00
Tadgh 416a52c679 Add changelog, fix code 2021-08-09 16:02:19 -04:00
VK-SMILECDR 1e0f843d6c
2852 - Simplify java mail code (#2874) 
* testing

* [2852] adding SimpleJavaEmail

* [2852] refactor email sender code

* [2852] dependency cleanup

* [2852] add missing dependency

* [2852] add missing spring framework test dependency

* [2852] add change log

* [2852] add change log

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2852-simplify-java-mail-code.yaml

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* [2852] minor test code cleanup

* [2852] add more tests

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-08-09 15:59:47 -04:00
Tadgh a7f0929405
Merge pull request #2875 from hapifhir/bump-version-5-6-0 
Bump version to 5.6.0-PRE1-SNAPSHOT
 2021-08-09 10:19:32 -04:00
Tadgh fa2b4ea0d7 Add version number 2021-08-06 14:08:10 -04:00
Tadgh 4fadc62066 Bump Hapi Version 2021-08-06 13:44:04 -04:00
Tadgh 0a303a0e11 Add MDM expansion by golden pid 2021-08-06 13:22:08 -04:00
Frank Tao 3c598e2ff8
Fix loinc designation issue with FormalName (#2865) 
* Fix loinc designation issue with FormalName

* Changed Loinc designation name to 'FullySpecifiedName'
 2021-08-06 10:59:01 -04:00
Kevin Dougan SmileCDR 35d3e3689b
2829 - Add DSTU3 Support To UploadTerminologyCommand (#2832) 2021-08-05 13:07:50 -04:00
michaelabuckley 1df270c9b9
Merge pull request #2864 from hapifhir/mb-20210804-ioob-pick-to-release 
Pick d85a4e5ec2 for release branch
 2021-08-04 16:41:07 -04:00
Michael Buckley e8e49f3ffa Pick d85a4e5ec2 for release branch 2021-08-04 16:34:48 -04:00
Nick Goupinets 4be3334f6f WIP after persistence checked 2021-08-04 16:33:59 -04:00
michaelabuckley 67682a86fb
Merge pull request #2862 from hapifhir/mb-20210804-combo-index-ioob 
Hack to fix a weird IOOB error we can't reproduce.
 2021-08-04 16:24:47 -04:00
Michael Buckley d85a4e5ec2 Hack to fix a weird IOOB error we can't reproduce. 2021-08-04 16:08:38 -04:00
Nick Goupinets 2bc024fef9 Merge remote-tracking branch 'origin/master' into 2849_add_new_mdm_param 2021-08-04 11:06:35 -04:00
Nick Goupinets 891a6304d0 WIP 2021-08-04 11:06:14 -04:00
jmarchionatto 66e1f10f5f
Merge pull request #2821 from hapifhir/issue-2786-upload-terminology-command-add-explicit-current-version-control 
Issue 2786 upload terminology command add explicit current version control
 2021-08-03 16:55:49 -04:00
juan.marchionatto cb68c59fb5 Remove validation in code which will never reached for the conditions. 2021-08-03 15:39:02 -04:00
juan.marchionatto 45549d2bb9 Fix broken ITs. 
Add error message for non-snapshot upload with current version = false combination.
 2021-08-03 14:11:14 -04:00
juan.marchionatto 1ff1954cba Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control 2021-07-30 11:20:23 -04:00
Nick Goupinets d467c1c79b yMerge branch 'master' into 2849_add_new_mdm_param 2021-07-30 11:18:33 -04:00
Nick Goupinets 0d34fe61c8 Adding tests 2021-07-30 11:17:56 -04:00
juan.marchionatto 4e8b1719f3 Add test for fixed use case 2021-07-30 10:48:10 -04:00
Ken Stevens f5dfc3a5ed
New reindex spring batch operation (#2845) 
* first sweep to add new $reindex job

* first cut done.  next up integration test.

* start roughing out reindex everything

* Failing test

* test passes

* add BundleUtil helper method

* rough in processEverything

* rough in processEverything

* fix mock test

* merge master

* Make BaseJpaTest.mySrd lenient.

* fix test

* reindex everything works with FIXMEs

* reindex everything more tests

* moar tests

* moar tests

* fix test

* fix test

* fix regression and fix test

* fix test cycle

* fixme

* fix test

* test provider layer

* reindex everything partition aware

* yay last fixme!

* run reindex in partitioned threads

* add fixmes for areas that require extra testing

* added transaction and log message

* manual integration testing

* changelog

* reindex all partitions

* bump hapi version

* fix test

* moar test

* pre-review cleanup

* fix javadoc

* review feedback

* review feedback

* review feedback

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>

* review feedback

* review feedback

* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>

* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>

* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>

* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>

* Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>

* Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>

Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
 2021-07-29 19:18:49 -04:00
juan.marchionatto 264dfee099 Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control 2021-07-29 16:21:56 -04:00
juan.marchionatto 1fcb36d84a Fix implementation to work also for use case where version is being updated. 
Use property instead of parameter.
 2021-07-29 15:54:00 -04:00
Nick Goupinets a2aa2ca1c3 2849 Added new parameter to MDM processing 2021-07-29 15:52:27 -04:00
Tadgh 1b9761c91b
Merge pull request #2840 from hapifhir/issue-2835-cve-jetty 
bump Jetty for CVEs
 2021-07-28 10:51:59 -04:00
Tadgh e076b30eef bump Jetty for CVEs 2021-07-27 15:49:00 -04:00
Tadgh 7c1d87b662
Merge pull request #2834 from hapifhir/issue-2833-commons-compress-cve 
Bump commons-compress version
 2021-07-27 11:00:19 -04:00
Tadgh 07cb3ff427 Bump commons-compress version 2021-07-27 09:14:05 -04:00
James Agnew f957661dda
Patient ID Partition Mode should support conditional create (#2828) 
* Fixes

* Test fix

* Add changelog

* Test fixes

* Test fixes

* Docs tweak

* Partitioning fixes

* Import fix

* Fix test data
 2021-07-26 14:18:58 -04:00
Ken Stevens 6bbb403fd1
When Client Id Strategy is set to NOT_ALLOWED, permit system requests to create resources (#2827) 
* resolved 2826

* fix regression
 2021-07-23 19:10:19 -04:00
Ken Stevens 92ec113775
fixed bug (#2824) 2021-07-23 16:58:53 -04:00
michaelabuckley 91bbebad27
Merge pull request #2830 from hapifhir/mb-docker-mac-m1-arm 
Upgrade net.java.dev.jna dependency to support Mac M1 ARM architecture.
 2021-07-23 16:50:31 -04:00
Michael Buckley 2539f49662 Add detail to changelog 2021-07-23 15:07:36 -04:00
Michael Buckley d99f94e665 changelog 2021-07-23 15:00:48 -04:00
Michael Buckley 0a256fef77 Upgrade net.java.dev.jna dependency to support Mac M1 ARM architecture. 2021-07-23 14:58:10 -04:00
Ken Stevens 6f7f787813
fixed migration (#2822) 2021-07-22 14:07:10 -04:00
juan.marchionatto ad6f7a204c Fix changelog syntax. Merge current master. 2021-07-22 10:49:16 -04:00