0d3ad622b5
Correct Validation Performance Regression ( #1895 )
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* Validation performance regression
* Optimize validation
* More cleanup
* Add changelog
* Test fixes
* Build fixes
2020-06-10 05:26:21 -04:00
122bd97344
Changes recommended during code review.
2020-06-09 09:59:03 -04:00
c86e46b196
Add documentation and remove requirement for max parameter (defaulted to 1 now).
2020-06-08 18:08:02 -04:00
dd84846b94
Empi 56 link merged person ( #1902 )
2020-06-05 15:50:50 -04:00
558f419955
Empi 54 not duplicate ( #1900 )
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add operation to unduplicate persons
2020-06-05 12:21:09 -04:00
21330a0a22
Transaction create performance improvement ( #1899 )
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* Work on perf issue
* Improve write performance for large bundles with tags
* Add changelog
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_1_0/1899-improve-write-xact-perf-with-tags.yaml
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Test fix
* Test fixes
* Test fixes
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
2020-06-05 05:26:06 -04:00
60e420aaa3
resolves #1838 ( #1839 )
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* Added %today that works like %now but with date precision instead of dateTime precision.
2020-06-04 09:52:41 -04:00
33753881e2
Empi 55 deactivate merged ( #1883 )
2020-06-03 13:12:01 -04:00
201c3a6187
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-06-02 07:47:06 -04:00
760d19cf89
Prep for 5.0.2
2020-06-02 07:46:57 -04:00
f48214deda
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
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# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-29 23:54:11 -04:00
7f72305f57
Improve Period range indexing ( #1873 )
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* Fix #1871 - Handle period range searches better
* Add changelog
* FIx tests
* Add test logging
* Address review comments
2020-05-28 08:56:43 -04:00
97a1bd40a1
Added TLS parameters to Java Mail Sender ( #1666 )
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* Added TLS parameters to Java Mail Sender
* changelog
2020-05-27 19:17:01 -04:00
6899604ae4
Correct validation of fragment codesystems ( #1865 )
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* Update validation for fragment codesystem
* Test fixes
* Add changelog
* Test fix
2020-05-25 20:44:09 -04:00
0175396ee0
Docs fix
2020-05-25 20:28:57 -04:00
b250ac4f3d
Add a change log.
2020-05-25 18:42:17 -04:00
6a4f5b9b3a
Credit for #1826
2020-05-24 09:32:44 -04:00
098c3ad737
Fixing a typo in the performance.md server_jpa doc ( #1849 )
2020-05-23 17:17:51 -04:00
9192d41448
Credit for #1637
2020-05-23 17:16:19 -04:00
e780a8402e
Use R5 snapshot generator ( #1862 )
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* Use R5 snapshot generator
* Snapshot generator reworking
2020-05-23 12:54:19 -04:00
c374383b37
Allow AuthorizationInterceptor to properly authorize GraphQL statements ( #1864 )
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* Allow AuthorizationInterceptor to properly authorize GraphQL statements
* Add changelog
2020-05-22 20:40:37 -04:00
a1a3d9de38
Merge branch 'master' into im_20200520_cascade_delete
2020-05-22 16:11:38 -04:00
d1b963321a
MVP EMPI implementation ( #1857 )
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EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
6a5c23c36b
Adding a proposed change log.
2020-05-22 13:45:17 -04:00
2360ed4abe
fix build ( #1861 )
2020-05-21 19:22:08 -04:00
ce5ade53d9
Fix #1855 - StructureDefinition search not working ( #1858 )
2020-05-21 09:35:37 -04:00
e07e071130
Avoid deserialization issues in subscription delivery ( #1856 )
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* Avoid deserialization issues in subscription delivery
* Add changelog
2020-05-21 05:47:39 -04:00
5b2181a563
Implement FHIR Patch ( #1850 )
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* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
9aaf5ccd63
Fix expunge when using unique search param ( #1854 )
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* Fix expunge when using unique search param
* Add chaneglog
2020-05-20 15:58:53 -04:00
8ab80e3529
Credit for #1853
2020-05-20 10:54:38 -04:00
c9c90b327c
Allow no read interceptor for partition ( #1851 )
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* Allow no read interceptor for partition
* Add changelog
* Test fix
2020-05-19 17:06:56 -04:00
cc92bd7b07
Revert "Start working on FHIRPatch"
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This reverts commit b3f6e7d521
2020-05-17 11:56:50 -04:00
b3f6e7d521
Start working on FHIRPatch
2020-05-17 11:44:06 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
9b1cd6cd5c
Add changelog
2020-05-15 05:45:01 -04:00
79a064dfd9
Optimize chain sql paths ( #1844 )
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* Start cleanup
* Almost workinf
* Possibly working!!
* Fixes
* Test fix
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Add changelog
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-15 05:36:12 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
c7da4b0914
Build Cleanup
2020-05-11 13:25:58 -04:00
0c13a65871
Bump to latest Core version ( #1841 )
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* Start working on bumping core
* Work on tests
* Work on tests
* Bump core definitions
* Bump R5 defs
* Tweak changelog
* Test fix
2020-05-11 12:37:16 -04:00
386f395e4b
Version bump 2 dependencies
2020-05-10 19:10:18 -04:00
5ea94abde5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-05-10 12:10:03 -04:00
9d8bd0d51e
Bump R4 definitions to 4.0.1 ( #1837 )
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* Bump R4 definitions to 4.0.1
* Add changelog
* Test fixes
2020-05-08 19:34:13 -04:00
7f12f80358
Docs correction
2020-05-08 11:48:26 -04:00
6cc07b6689
Make binary storage work for bulk export ( #1836 )
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* Make binary storage work for bulk export
* Add changelog
* Build fixes
* Test fix
* Test fix
* Test fix
2020-05-07 19:20:22 -04:00
e874abad47
Add Grand Rounds to HAPI FHIR Atlas
2020-05-06 13:47:26 -07:00
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
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* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
35c2b7a2c1
Allow disabling text modifier indexing ( #1831 )
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* Allow disabling text modifier indexing
* Add changelog
* Address review comment
* Resolve merge conflicts
2020-05-05 12:16:55 -04:00
91147cf6b0
Scope tag search to correct resource type ( #1829 )
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* failing _tag tests
* cleanup
* Scope tag query to correct resource type
* Changelog
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 11:09:46 -04:00
ceae417d35
Credit for #1710
2020-05-04 05:42:32 -04:00
394a47b83a
Fix YAML error
2020-05-01 13:03:59 -04:00
586089fc69
Credit for #1749
2020-05-01 07:38:31 -04:00
a786756169
Credit for #1812
2020-05-01 07:27:12 -04:00
439a901e30
Credit for #1734
2020-05-01 05:56:47 -04:00
3d5a8bb3f8
Add UCUM support ( #1824 )
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* Add UCUM support
* Add changelog
* Some cleanup
* Test fix
* Add flywayDB callback
* Add hooks to schema migrator
2020-04-30 15:22:41 -04:00
8f8a8a3dc2
Merge branch 'master' into date-match-bug
2020-04-29 16:17:50 -07:00
885a18e0d8
Credit for #1788
2020-04-29 09:12:36 -04:00
ededcc18d2
Add Partitioning / Multitenancy ( #1807 )
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* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* Add columns
* Work on multitenancy
* Work on muiltitenancy
* Work on multitenancy
* Work on uniques
* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* More work on multitenancy
* Work on multitenancy
* Multitenancy work
* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* Work on multitenancy
* Work on docs
* Work on multitenancy
* Work on docs
* DOcs work
* Tenancy docs
* Work on docs
* Finish docs
* Add changelog
* Rename config
* Add migration tasks
* Fix typo
* Migration fix
* One more migration fix
* A couple more migration fixes
* Docs cleanup
* Work on docs
* Bump boot version
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Work on review comments
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/schema.md
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/IdHelperService.java
Co-Authored-By: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Compile fx
* Test fixes
* One more bugfix
* Update operation name
* Add one more constant
* Roll back a change that was causing test failures
* Test fixes
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-04-24 05:45:11 -04:00
37aa11182d
Docs fixes
2020-04-23 21:05:23 -04:00
0b1a64d093
Merge pull request #1809 from jamesagnew/ks-20200420-changelog
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retroactively add changelog for a search database change
2020-04-23 11:39:24 -04:00
b728c14b98
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_3_0/1698-remove-search-last-used-column.yaml
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Co-Authored-By: James Agnew <jamesagnew@gmail.com>
2020-04-23 11:39:12 -04:00
5f88d87027
Tweak to #1801 - Normalize double leading zeros in database ( #1815 )
2020-04-23 09:44:08 -04:00
7efd8a9f6e
Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy
2020-04-21 20:55:09 -04:00
6226381595
Merge branch 'master' into ja_20200206_multitenancy
2020-04-21 20:54:56 -04:00
1f37cdd8cf
Address review comments
2020-04-21 20:53:10 -04:00
49d15dbbe8
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/schema.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:32:27 -04:00
45fdd9981e
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:30:50 -04:00
4184268bea
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:30:10 -04:00
50ef7d7afd
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:27:24 -04:00
6e444986bc
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:26:02 -04:00
7d0d7d9ab7
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:20:34 -04:00
d10538cdbe
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:20:20 -04:00
fb4e620ba8
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:19:50 -04:00
532c830a43
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:19:35 -04:00
4fe7f6e322
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:19:02 -04:00
53695c50a0
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:18:47 -04:00
c67cbca8c2
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:18:33 -04:00
c7de85339c
Work on review comments
2020-04-21 20:18:06 -04:00
02e5dcb90d
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:17:44 -04:00
138369ede2
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md
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Co-Authored-By: Ken Stevens <khstevens@gmail.com>
2020-04-21 20:17:17 -04:00
11fade2c2e
Bump boot version
2020-04-21 15:55:35 -04:00
4b93a0d724
Credit for #1806
2020-04-21 15:49:43 -04:00
1f848dde82
Credit for #1791
2020-04-21 15:30:42 -04:00
c716216b34
Adjust return type for fluent delete() operation ( #1805 )
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* Add cascading delete to client
* Add changelog
* Client delete should return MethodOutcome
* Rerturn more appropriate type for delete operations
* Refactor cascade detection to be reusable
2020-04-21 15:23:11 -04:00
f218ade480
Credit for #1810
2020-04-21 15:15:04 -04:00
4abebf2247
Docs cleanup
2020-04-21 09:28:52 -04:00
1133c5a6fc
retroactively add javadoc for a search database change
2020-04-20 17:24:30 -04:00
e6c806283e
Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy
2020-04-20 16:58:59 -04:00
544d9fbc6c
Add migration tasks
2020-04-20 16:58:48 -04:00
bbab016ca6
Rename config
2020-04-20 12:38:04 -04:00
faddeeb779
Add changelog
2020-04-20 11:15:35 -04:00
95b77af570
Merge branch 'master' into ja_20200206_multitenancy
2020-04-20 11:07:10 -04:00
7248b4e18e
Finish docs
2020-04-20 11:02:27 -04:00
c412339a05
Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy
2020-04-19 14:41:26 -04:00
d3479cd093
Work on docs
2020-04-19 14:41:18 -04:00
cd3e1c5e72
Tenancy docs
2020-04-19 10:15:51 -04:00
6c760c9bff
DOcs work
2020-04-18 19:14:02 -04:00
c0965b1be8
Work on docs
2020-04-18 18:54:46 -04:00
2ddeea37c2
Work on multitenancy
2020-04-18 17:27:06 -04:00
42c8cd0e38
Add cascading delete to client ( #1804 )
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* Add cascading delete to client
* Add changelog
2020-04-18 11:16:16 -04:00
bcac2b061c
Credit for #1799
2020-04-18 11:14:15 -04:00
48057b9d8e
Merge branch 'master' into ja_20200206_multitenancy
2020-04-17 17:59:48 -04:00
497757501b
Improve search method binding priority ( #1802 )
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* Work on search method binding priority
* Work on method priority
* Work on binding priority
* Test fixes
* Add changelog
* Test fixes
* compile fix
* One more comple fix
* Test cleanup
* Test fix
2020-04-17 09:28:33 -04:00
25cdbb15c2
Work on multitenancy
2020-04-16 15:33:48 -04:00
d822867a4a
Merge branch 'master' into ja_20200206_multitenancy
2020-04-15 22:12:20 -04:00
f95f619bdc
Correct two JPA processing bugs ( #1801 )
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* Work on search params on contained
* Add workaround for stored decimals with leading decimal point
* Add changelog
* Cleanup
* Test fix
* Test fix
* One more test fix
2020-04-15 14:22:47 -04:00
982b54df57
Work on multitenancy
2020-04-13 11:50:49 -04:00
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
219332e9e3
Work on multitenancy
2020-04-10 11:11:29 -04:00
1a3a40b3c9
Merge pull request #1796 from jamesagnew/ja_20200409_report_json_error_attr_name
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Improve error message reporting for invalid json - Fix #1793
2020-04-09 15:11:57 -04:00
e0fcbe1df2
Merge branch 'master' into ja_20200206_multitenancy
2020-04-09 11:52:27 -04:00
fdf6633145
Add validation for currencies to validator ( #1797 )
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* Add validation for currencies to validator
* Add changelog
2020-04-09 11:39:30 -04:00
2a43aa3b6c
Improve error message reporting for invalid json - Fix #1793
2020-04-09 09:53:13 -04:00
8cdc3a72ce
Fix #1794 - Client ID and Server ID mode clash ( #1795 )
...
* Fix #1794 - Client ID and Server ID mode clash
* Try to track down intermittent test failure
2020-04-09 09:31:13 -04:00
0e44786320
Add changelog
2020-04-08 18:07:36 -04:00
b78205c218
Ongoing cleanup
2020-04-06 17:00:45 -04:00
6baf1995c9
Work on subscription cleanup
2020-04-02 20:30:19 -04:00
08c1c28f67
Credit for #1786
2020-03-31 20:08:25 -04:00
9d09466c21
Add debug logging to CLI
2020-03-31 10:49:16 -04:00
fe48313100
Add response size capturing interceptor ( #1776 )
...
* Work on capturing repsonse sizes
* Interceptor complete
* Add changelog
* Test fix
2020-03-30 11:24:10 -04:00
62d867902f
Work on multitenancy
2020-03-29 18:16:04 -04:00
691f2c4e9a
Work on muiltitenancy
2020-03-29 13:35:20 -04:00
9df4c58122
Work on multitenancy
2020-03-27 09:22:00 -04:00
ec6fe70acb
Merge branch 'master' into ja_20200206_multitenancy
2020-03-27 05:50:08 -04:00
b794618e9d
Avoid a crash encoding contained bundle ( #1778 )
...
* Avoid a crash encoding contained bundle
* Add changelog
* Apply same fix to XML
* Fix typo
2020-03-25 21:20:10 -04:00
4b5165b5e2
Docs fix
2020-03-24 20:10:14 -04:00
eaaddaf7ca
Fix #1763 - Include bundle type in summary=count responses ( #1773 )
...
* Fix #1763 - Include bundle type in summary=count responses
* Test fix
2020-03-24 16:24:41 -04:00
c6d23a8bc6
Add chain on _type parameter ( #1772 )
...
* Add chain on _type parameter
* Add changelog
* Test fix
* Address review comments
* Fix azure yaml
* Correct HTTPs in pom
* One more pom tweak
* Test fix
* Try azure again
2020-03-24 09:44:57 -04:00
13f0e5384b
Address review comments
2020-03-24 06:02:55 -04:00
fa29f3e8ab
Credit for #1770
2020-03-23 19:12:05 -04:00
7706600a8c
Add changelog
2020-03-23 18:05:48 -04:00
14316147c5
Resolve some docs issues
2020-03-23 10:34:12 -04:00
c2ae5a8326
Add FHIRPath evaluation interceptor ( #1769 )
...
* Add FHIRPath evaluation interceptor
* Add changelog
2020-03-22 12:57:24 -04:00
b8b8248133
Merge branch 'master' of https://github.com/jaferkhan/hapi-fhir into cleanup-docs-v2
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/validation/profile_validator.md
2020-03-22 02:25:11 +05:00
ad46c3173a
Add missed attribution to changelog
2020-03-18 10:26:33 -07:00
3eb09b15f0
Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter
2020-03-17 10:32:43 -07:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
77733b59fa
Add changelog
2020-03-17 09:33:58 -07:00
288abe4504
Improve efficiency in search deleting ( #1759 )
...
* Improve efficiency in search deleting
* Changelog
* Address review comments
2020-03-17 12:33:38 -04:00
5867d62d62
Avoid duplicate predicate in _id queries ( #1761 )
...
* Avoid duplicate predicate in _id queries
* Add changelog
* Change to trigger CI
* Address review comments
2020-03-17 11:12:58 -04:00
1dc5d89013
Optmize forced ID resolution ( #1754 )
...
* Add forced ID caching
* Work on id optimization
* Test fixes
* More optimization work
* Add some docs
* Work on docs
* Test fixes
* Test fixes
* Test fixes
* Address review comments
* Compile fix
2020-03-12 17:12:50 -04:00
46c67d20cc
Add VEIG(Vietnam Ehealth Innovation Group) to points.json
2020-03-06 17:43:56 +07:00
828ddd5185
Update docs
2020-03-04 12:14:55 -08:00
58ee76549c
Merge branch 'master' into ja_20200206_multitenancy
2020-03-04 08:19:22 -05:00
5b5ef08500
Merge remote-tracking branch 'remotes/origin/master' into ks-20200302-near-chain
2020-03-03 09:44:52 -05:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
58b5bd9664
Limit type on _has query ( #1743 )
...
* Limit type on _has query
* Add changelog
2020-03-03 08:28:38 -05:00
3c2c1dab2e
Error on missing profile validation ( #1742 )
...
* Error on missing profile validation
* Add changelog
* Test fixes
2020-03-03 08:28:26 -05:00
bce1716c6c
documentation
2020-03-02 22:13:21 -05:00
8c78e465b1
Defer large term delta adds ( #1736 )
...
* Defer large term delta adds
* Add changelog
2020-02-28 14:41:15 -05:00
5bc554949b
Remove deleted resources from cached search results ( #1732 )
...
* Remove deleted resources from cached search results
* Add changelog
* Add tests
2020-02-28 10:57:26 -05:00
cb9906580e
Index canonical references ( #1728 )
...
* Index canonical references
* Add changelog
* Fix compile error
* Add whitespace
2020-02-25 21:45:46 -05:00
df9e86ec66
Merge branch 'master' into date-match-bug
2020-02-25 17:26:53 -05:00
b2b0ff22b4
Collapse date joins ( #1726 )
...
* Collapse date joins
* Add changelog
* Address review comments
* Add whitespace
* fix test
Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
2020-02-25 17:17:13 -05:00
97c98254d0
Extract Common functionality out of CalculateHashesTask, build CalculateOrdinalDatesTask based on it
2020-02-25 16:09:08 -05:00
512af5b87d
Add changelog entry
2020-02-25 14:09:51 -05:00
a05c4ce9eb
Don't thrash delta links ( #1721 )
...
* Don't thrash delta links
* Add changelog
* Remove commented out code
2020-02-19 17:46:54 -05:00
ab8dfa5a03
Avoid multi-term for ElasticSearch ( #1717 )
...
* Avoid multi-term for ElasticSearch
* Add changelog
* Remove redundant code
2020-02-18 16:40:44 -05:00
fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid
...
Changes to schema to loosen dependencies involving Forced ID table
2020-02-18 14:16:09 -05:00
64f07e4dc0
Includes performance enhancement ( #1702 )
...
* Includes performance enhancement
* Add changelog
* Test fix
* Fix typo
* A few coverage cleanups
* Test fix
* Fix changelog
2020-02-18 14:11:48 -05:00
2f4f62b32e
Add change log for Resource and Resource History table changes.
2020-02-18 14:09:59 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
97289b3a1f
Credit for #1692
2020-02-04 17:38:42 -05:00
afd6a2b3a7
Remove entry from atlas
2020-02-01 17:31:57 -05:00
2545fc6e3d
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-29 17:06:02 -05:00
beab5b3a9c
Credit for #1689
2020-01-29 05:56:36 -05:00
95254406bc
updated custom narrative generation documentation
...
I found that the documented pattern of
[name].class=[fully qualified classname]
No longer works. The pattern of
[name].resourceType=[ResourceType]
worked for me, I updated the datatype example as well in kind, but I've not used it that way.
Maybe some extended examples for the other property type extensions would be good - e.g. .profile, .style, .contextPath, .narrative, .title
2020-01-29 05:53:45 -05:00
471073103f
Further reduce memory usage in the terminology delta operations
2020-01-28 14:36:15 -05:00
cef58b528e
added _filter to list of search gaps
2020-01-25 18:46:58 -05:00
eff4b294df
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-25 18:40:55 -05:00
ba0048aade
Resolve memory leak ( #1685 )
...
* Work on memory leak
* Work on term delta uploading
* Resolve memoery leak in terminology service
* Fix cache key
2020-01-25 17:48:26 -05:00
a63c62b2e1
ensure in-memory matching location search for Dstu3 falls back to a db search
2020-01-25 14:35:20 -05:00
78ab01f00b
Change log and check in-memory search for location
2020-01-24 21:56:14 -05:00
dd01688a90
Credit for #1679
2020-01-24 08:32:19 -05:00
39ff698dd2
Parser performance tweaks ( #1660 )
...
* Parser improvements
* Parser tweaks
* Fix test
* Add changelog
* Bump spring mvc version
* Bump spring version
* Test fix?
2020-01-22 14:44:12 -05:00
0718f6b52a
Allow schemalocation in XML validation ( #1677 )
...
* Allow schemaLocation declaration in XML when validating
* Add fix for #1676
2020-01-21 07:14:16 +09:00
c0e929dacb
Copy identifiers to placeholder resources ( #1675 )
...
* Copy identifiers to placeholder resources
* Add tests
* Maven cleanup
* Still messing around with azure
* Adding to logging
* More azure work
* One more attempt
* More messing around with azure
* Test fix
* Another caching attempt
* More work on azure pipeline
* Fix pipeline file
* Keep working on pipeline
* More work on azure
* More azure
* More azure work
* More azure
2020-01-21 06:09:06 +09:00
aad5a30a3d
Support count=0 ( #1670 )
...
* Support count=0
* Fix LGTM issue
2020-01-15 14:52:32 +08:00
201ec34db4
Fix expunge issue when no tags present ( #1671 )
...
* Fix expunge issue when no tags present
* Add changelog
* Try to clean up POMs that are failing CI
* Rework dependencies
* Roll back change that did not work
2020-01-15 14:47:22 +08:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
62b50f06ad
Documentation fix
2020-01-14 04:44:10 +08:00
114e8f5f15
Credit for #1655
2020-01-13 13:39:47 +08:00
0c008e11be
License header version bump
2020-01-10 13:15:14 -05:00
ca3b4297e1
FIx #1649 - Account for LOINC file format changes in 2.67
2020-01-03 14:19:22 -05:00
2f3018c56e
Credit for #1603
2020-01-03 13:43:16 -05:00
82921472d4
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-01-03 13:43:11 -05:00
e65363f74d
Fix typo.
2020-01-03 12:31:11 -05:00
3edcb04fb1
Add atlas entry
2020-01-03 11:08:48 -05:00
48f7ee5afb
Rolling back previous unnecessary changes.
2019-12-31 09:25:56 -05:00
856993edf8
Moved changelog entry, and added clarifying comments to DateRangeParam.
2019-12-30 15:29:35 -05:00
3788136194
Credit for #1650
2019-12-27 10:02:00 -05:00
baa8eaf728
Merge pull request #1650 from jaferkhan/fix-modifier-typo
...
Correct typos in code snippets across three different files
2019-12-27 10:00:33 -05:00
4c923c6e92
Atlas update
2019-12-27 08:16:17 -05:00
27a084f061
Correct typo in code's comment. Fixes gh-1617
2019-12-27 16:25:45 +05:00
8039d68608
Fixed various typos and other minor issues in docs
2019-12-26 01:36:18 +05:00
35fbe69589
Add more text to the incomplete paragraph. Fixes gh-1638
2019-12-25 20:31:57 +05:00
ecb8da7aea
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-12-21 11:57:51 -05:00
5aa961ade7
Docs tweak
2019-12-21 11:56:31 -05:00
c03e470fcd
Credit for #1588
2019-12-21 11:37:02 -05:00
736b066884
Update David's email
2019-12-21 09:35:44 -05:00
8a1fa3ea3c
Merge pull request #1643 from jamesagnew/ja_20191219_improve_validator
...
Handle standalone validation of custom VS/CS
2019-12-19 16:38:29 -05:00
d050b7b3c2
Add changelog
2019-12-19 15:03:30 -05:00
d7240019c3
Points update from Jens
2019-12-18 19:26:48 -05:00
5db231bae1
Add style guide
2019-12-18 05:50:55 -05:00
f77428c05b
Update text on changelog
2019-12-17 11:16:16 -05:00
04b79a7b6f
Documentation updates
2019-12-16 18:52:28 -05:00
e1f2d044ed
Add errorprone back into build
2019-12-15 09:42:51 -05:00
89f819ae74
A bit more work on docs
2019-12-15 08:07:23 -05:00
ba8f50f0c8
Docs updates
2019-12-14 18:19:09 -05:00
a1a50ad257
Fixed typo in docs
2019-12-14 18:55:49 +05:00
d232f4267e
Docs tweak
2019-12-12 09:33:00 -05:00
2054b409ff
Fix compile error
2019-12-10 16:47:50 -05:00
8049215d07
A couple more docs updates
2019-12-10 16:41:43 -05:00
d277d3fed5
Docs updates
2019-12-10 16:10:09 -05:00
bd1b41ff82
change out-of-order-permitted from environment variablet to flag to work like dont-use-flyway
2019-12-09 16:44:24 -05:00
5117b93add
document new environment variable
2019-12-09 11:49:43 -05:00
c1aec7c0e4
document new environment variable
2019-12-09 11:45:30 -05:00
5e69fcdc5f
Fix compile error
2019-12-06 17:06:53 -05:00
438ef70fdb
Reuse connections in brute force migrator
2019-12-06 16:52:26 -05:00
d91617e923
Account for review changes ( #1623 )
2019-12-05 18:01:45 -05:00
b2e2cb88d7
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-12-03 10:53:19 -05:00
f277819830
Add map points JSON
2019-12-03 10:53:06 -05:00
f58fba6f04
Some test cleanup ( #1616 )
...
* Some test cleanup
* Add test
* More test logging
* More docs cleanup
* Add test logging
2019-12-02 11:00:18 -05:00
86bd9a28fe
Fix to valueset expansion logic ( #1613 )
...
* Fox to valueset expansion logic
* Work on docs
* Docs tweaks
* Docs tweaks
* Fix test
* Remove unused class
* Add changelog
2019-12-01 21:21:19 -05:00
2115721940
Corrected typos and fixed grammatical mistakes in documentation
2019-12-01 03:35:35 +05:00
5f803f7e68
Documentation updates
2019-11-26 02:00:22 -03:00
5becb613fe
Add some documentation
2019-11-24 19:09:34 -05:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
969174136e
Rename org.hl7.fhir.convertors package as it's already used
2019-10-24 12:23:38 -05:00
79e97b24e5
Fix #1481 - Add missing dependency to hapi-fhir-docs
2019-10-17 13:57:58 -04:00
12a74e6cbc
Fix term uploads and validate against valueset recalculation ( #1540 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Work on upload command
* Test fixes
* Work on validation fixes
* Work on validation against pre-expansion
* Work on direct validation
* A bit of cleanup
* Add some javadoc
* Force another build
* Test fixes
* Fix tests
* Fix tests
2019-10-15 21:31:29 -04:00
c8ce07c40e
Deprecate redundant IVersionSpecificBundleProvider method
2019-09-30 09:45:31 -04:00
663431f571
Fix docs issue
2019-09-27 16:57:14 -04:00
27c637b8d7
Docs fix
2019-09-27 14:02:42 -04:00
5f563057c0
Set up CI with Azure Pipelines ( #1502 )
...
* Set up CI with Azure Pipelines
[skip ci]
* Update azure-pipelines.yml for Azure Pipelines
* Skip tests for a build
* Work on pipeline
* Update azure-pipelines.yml for Azure Pipelines
* Interceptors docs
* Test fix
* Disable releases from snapshot repo
* Try disabling jitpack
* Fix dependency issue
* A couple of test fixes
* Change to trigger a build
* Force a change to trigger a build
* Force a build
* FIx test
2019-09-24 14:38:38 -04:00
004f42cdcc
Clean up docs
2019-09-23 15:56:02 -04:00
2bcb1c9c1c
Work on docs
2019-09-23 09:56:29 -04:00
e05ea676e9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-22 15:55:06 -04:00
520b50dfdc
Ongoing work on docs migration
2019-09-22 15:54:52 -04:00
936587df6e
Work on migrating docs
2019-09-22 15:52:49 -04:00
0a5eca0821
Work on docs
2019-09-22 13:25:50 -04:00
d43c1760ef
Adjust docs
2019-09-22 08:59:54 -04:00
58b7e3a923
Start splitting docs into separate project
2019-09-22 08:58:17 -04:00
James Agnew
ianmarshall
Ken Stevens
Craig Appl
IanMMarshall
Tadgh
Simon Yun
Tadgh
Jafer Khan
tungdt
Gary Graham
dionmcm
Diederik Muylwyk
John Poth
Stig Rohde Døssing