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90 Commits

Author SHA1 Message Date
James Agnew a05c4ce9eb
Don't thrash delta links (#1721) 
* Don't thrash delta links

* Add changelog

* Remove commented out code
 2020-02-19 17:46:54 -05:00
James Agnew ab8dfa5a03
Avoid multi-term for ElasticSearch (#1717) 
* Avoid multi-term for ElasticSearch

* Add changelog

* Remove redundant code
 2020-02-18 16:40:44 -05:00
IanMMarshall fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid 
Changes to schema to loosen dependencies involving Forced ID table
 2020-02-18 14:16:09 -05:00
James Agnew 64f07e4dc0
Includes performance enhancement (#1702) 
* Includes performance enhancement

* Add changelog

* Test fix

* Fix typo

* A few coverage cleanups

* Test fix

* Fix changelog
 2020-02-18 14:11:48 -05:00
ianmarshall 2f4f62b32e Add change log for Resource and Resource History table changes. 2020-02-18 14:09:59 -05:00
James Agnew 60f16dd91d
Update to 4.3.x core JAR (#1715) 
* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Start working on converter

* Account for compile errors

* Test fix

* Work no validator

* Work on getting core working

* Add some test coverage

* Many test fixes

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
 2020-02-17 14:28:29 -05:00
jamesagnew ddc7b601ee Version bump to 4.3.0-SNAPSHOT 2020-02-16 19:23:22 -05:00
jamesagnew 4fd80cfca7 Bump to 4.2.0 2020-02-16 19:00:15 -05:00
James Agnew 97289b3a1f Credit for #1692 2020-02-04 17:38:42 -05:00
jamesagnew afd6a2b3a7 Remove entry from atlas 2020-02-01 17:31:57 -05:00
Ken Stevens 2545fc6e3d Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search 
# Conflicts:
#	hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
 2020-01-29 17:06:02 -05:00
jamesagnew beab5b3a9c Credit for #1689 2020-01-29 05:56:36 -05:00
dionmcm 95254406bc updated custom narrative generation documentation 
I found that the documented pattern of
 [name].class=[fully qualified classname]
No longer works. The pattern of
 [name].resourceType=[ResourceType]
worked for me, I updated the datatype example as well in kind, but I've not used it that way.

Maybe some extended examples for the other property type extensions would be good - e.g. .profile, .style, .contextPath, .narrative, .title
 2020-01-29 05:53:45 -05:00
James Agnew 471073103f Further reduce memory usage in the terminology delta operations 2020-01-28 14:36:15 -05:00
Ken Stevens cef58b528e added _filter to list of search gaps 2020-01-25 18:46:58 -05:00
Ken Stevens eff4b294df Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search 
# Conflicts:
#	hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
 2020-01-25 18:40:55 -05:00
James Agnew ba0048aade
Resolve memory leak (#1685) 
* Work on memory leak

* Work on term delta uploading

* Resolve memoery leak in terminology service

* Fix cache key
 2020-01-25 17:48:26 -05:00
Ken Stevens a63c62b2e1 ensure in-memory matching location search for Dstu3 falls back to a db search 2020-01-25 14:35:20 -05:00
Ken Stevens 78ab01f00b Change log and check in-memory search for location 2020-01-24 21:56:14 -05:00
James Agnew dd01688a90 Credit for #1679 2020-01-24 08:32:19 -05:00
James Agnew 39ff698dd2
Parser performance tweaks (#1660) 
* Parser improvements

* Parser tweaks

* Fix test

* Add changelog

* Bump spring mvc version

* Bump spring version

* Test fix?
 2020-01-22 14:44:12 -05:00
James Agnew 0718f6b52a
Allow schemalocation in XML validation (#1677) 
* Allow schemaLocation declaration in XML when validating

* Add fix for #1676
 2020-01-21 07:14:16 +09:00
James Agnew c0e929dacb
Copy identifiers to placeholder resources (#1675) 
* Copy identifiers to placeholder resources

* Add tests

* Maven cleanup

* Still messing around with azure

* Adding to logging

* More azure work

* One more attempt

* More messing around with azure

* Test fix

* Another caching attempt

* More work on azure pipeline

* Fix pipeline file

* Keep working on pipeline

* More work on azure

* More azure

* More azure work

* More azure
 2020-01-21 06:09:06 +09:00
James Agnew aad5a30a3d
Support count=0 (#1670) 
* Support count=0

* Fix LGTM issue
 2020-01-15 14:52:32 +08:00
James Agnew 201ec34db4
Fix expunge issue when no tags present (#1671) 
* Fix expunge issue when no tags present

* Add changelog

* Try to clean up POMs that are failing CI

* Rework dependencies

* Roll back change that did not work
 2020-01-15 14:47:22 +08:00
James Agnew 1390ea3c06
Update FHIR R5 structures to 4.2.0 version (#1665) 
* Work on upgrading core

* Work on R5 updates

* Work on core updates

* Test fix

* Update model version properties file for R5

* Bump core version

* Test fixes

* Add 4.2.0-SNAPSHOT version to versions page in docs
 2020-01-14 10:27:01 +08:00
James Agnew 62b50f06ad Documentation fix 2020-01-14 04:44:10 +08:00
James Agnew 114e8f5f15 Credit for #1655 2020-01-13 13:39:47 +08:00
James Agnew 0c008e11be License header version bump 2020-01-10 13:15:14 -05:00
James Agnew ca3b4297e1 FIx #1649 - Account for LOINC file format changes in 2.67 2020-01-03 14:19:22 -05:00
James Agnew 2f3018c56e Credit for #1603 2020-01-03 13:43:16 -05:00
James Agnew 82921472d4 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-01-03 13:43:11 -05:00
Diederik Muylwyk e65363f74d Fix typo. 2020-01-03 12:31:11 -05:00
James Agnew 3edcb04fb1 Add atlas entry 2020-01-03 11:08:48 -05:00
Diederik Muylwyk 48f7ee5afb Rolling back previous unnecessary changes. 2019-12-31 09:25:56 -05:00
Diederik Muylwyk 856993edf8 Moved changelog entry, and added clarifying comments to DateRangeParam. 2019-12-30 15:29:35 -05:00
jamesagnew 3788136194 Credit for #1650 2019-12-27 10:02:00 -05:00
James Agnew baa8eaf728
Merge pull request #1650 from jaferkhan/fix-modifier-typo 
Correct typos in code snippets across three different files
 2019-12-27 10:00:33 -05:00
jamesagnew 4c923c6e92 Atlas update 2019-12-27 08:16:17 -05:00
Jafer Khan 27a084f061 Correct typo in code's comment. Fixes gh-1617 2019-12-27 16:25:45 +05:00
Jafer Khan 35fbe69589 Add more text to the incomplete paragraph. Fixes gh-1638 2019-12-25 20:31:57 +05:00
James Agnew ecb8da7aea Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-12-21 11:57:51 -05:00
James Agnew 5aa961ade7 Docs tweak 2019-12-21 11:56:31 -05:00
jamesagnew c03e470fcd Credit for #1588 2019-12-21 11:37:02 -05:00
jamesagnew 736b066884 Update David's email 2019-12-21 09:35:44 -05:00
James Agnew 8a1fa3ea3c
Merge pull request #1643 from jamesagnew/ja_20191219_improve_validator 
Handle standalone validation of custom VS/CS
 2019-12-19 16:38:29 -05:00
James Agnew d050b7b3c2 Add changelog 2019-12-19 15:03:30 -05:00
jamesagnew d7240019c3 Points update from Jens 2019-12-18 19:26:48 -05:00
jamesagnew 5db231bae1 Add style guide 2019-12-18 05:50:55 -05:00
James Agnew f77428c05b Update text on changelog 2019-12-17 11:16:16 -05:00