honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
6,809 Commits 682 Branches 130 Tags 1.2 GiB
Commit Graph

6809 Commits

Author SHA1 Message Date
ianmarshall 8fcdc78077 Fix issues resulting from latest merge. 2020-05-08 09:31:05 -04:00
ianmarshall e56cb049f7 Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-08 09:19:44 -04:00
ianmarshall c290fa3493 Fixes to enable $lastn to return more than 32K records. 2020-05-08 09:19:14 -04:00
jamesagnew 78fa296f1f License header updates 2020-05-07 19:37:16 -04:00
James Agnew 6cc07b6689
Make binary storage work for bulk export (#1836) 
* Make binary storage work for bulk export

* Add changelog

* Build fixes

* Test fix

* Test fix

* Test fix
 2020-05-07 19:20:22 -04:00
James Agnew b67509d7ff
Transaction write performance fix (#1832) 
* Performance fix for transactions

* Test fix

* Fixes

* Add docs

* Test fixes
 2020-05-07 10:56:41 -04:00
Simon Yun e874abad47 Add Grand Rounds to HAPI FHIR Atlas 2020-05-06 13:47:26 -07:00
ianmarshall 1e882d640d Merging with latest from Master. 2020-05-05 17:35:22 -04:00
ianmarshall 4cced40b54 Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 
# Conflicts:
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
 2020-05-05 17:19:32 -04:00
ianmarshall 4db5beeabf Additional changes to enable processing of lastn operations with large numbers of parameters. 2020-05-05 16:53:47 -04:00
James Agnew a77aa6a28e
Multitenancy Ticket 2 - #1813 (#1821) 
* Work on multitenancy

* Second ticket started

* More multitenancy work

* Work on tenancy security

* Work on multitenancy

* Test fixes

* Add docs

* cs tweak

* Multitenancy fixes

* Add debug log

* Fix build

* Add headers

* Add partition selection interceptor hook

* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Account for review comments

* Resolve FIXMES

* Work on tests

* Test fixes

* A bit more cleanup

* Work on multitenancy

* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md

Co-authored-by: Ken Stevens <khstevens@gmail.com>

* Address review comments

* Allow disabling text modifier indexing

* Add changelog

* Docs fixes

* Address review comment

* Resolve merge conflicts

* Merge master

* Compile fix

* Test fix

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-05-05 15:12:15 -04:00
James Agnew 35c2b7a2c1
Allow disabling text modifier indexing (#1831) 
* Allow disabling text modifier indexing

* Add changelog

* Address review comment

* Resolve merge conflicts
 2020-05-05 12:16:55 -04:00
James Agnew dada217966
Clean up hash code calculation (#1830) 
* Clean up hash code calculation

* Test fixes

* Test fix

* Test fixes

* Compile fix

* Test fix
 2020-05-05 11:11:24 -04:00
James Agnew 91147cf6b0
Scope tag search to correct resource type (#1829) 
* failing _tag tests

* cleanup

* Scope tag query to correct resource type

* Changelog

* Test fix

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-05-05 11:09:46 -04:00
jamesagnew ceae417d35 Credit for #1710 2020-05-04 05:42:32 -04:00
Ian 41c715dc2d
Make BaseOrListParam and BaseParam visible outside of the package (#1710) 2020-05-04 05:39:10 -04:00
jamesagnew 8b49142b94 Clean up migrator tasks 2020-05-01 15:03:36 -04:00
jamesagnew 31f86953df Fix compile error 2020-05-01 13:57:44 -04:00
jamesagnew 394a47b83a Fix YAML error 2020-05-01 13:03:59 -04:00
jamesagnew 586089fc69 Credit for #1749 2020-05-01 07:38:31 -04:00
gematik FuE 9ace4889bc
enhance constructor, so an existing InterceptorService could be passed in (#1749) 2020-05-01 07:36:45 -04:00
jamesagnew a786756169 Credit for #1812 2020-05-01 07:27:12 -04:00
Zhe Wang 38a899bf64
Take super class methods into account and adding unit test (#1812) 
* take super class methods into account as well

* added unit test for pull request 44f9b416ee

* take super class methods into account as well

* added unit test for pull request 44f9b416ee

* added unit test
 2020-05-01 07:24:28 -04:00
jamesagnew 439a901e30 Credit for #1734 2020-05-01 05:56:47 -04:00
Bert Roos c8ad3e80e6
Correction in comment (#1734) 
The description for SERVER_INCOMING_REQUEST_PRE_HANDLED referred to itself rather than to SERVER_INCOMING_REQUEST_PRE_PROCESSED. Along with this corrected begin into begun.
 2020-05-01 05:36:28 -04:00
jamesagnew 41056092ed License header updates 2020-04-30 18:24:07 -04:00
James Agnew 3d5a8bb3f8
Add UCUM support (#1824) 
* Add UCUM support

* Add changelog

* Some cleanup

* Test fix

* Add flywayDB callback

* Add hooks to schema migrator
 2020-04-30 15:22:41 -04:00
Tadgh f94f2fde65
Add delegating setters and getters to DaoConfig (#1825) 2020-04-30 14:32:22 -04:00
Tadgh 8fce86bba5
Merge pull request #1730 from jamesagnew/date-match-bug 
Add integer date fields to ResourceIndexedSearchParamDate
 2020-04-30 08:53:35 -07:00
Tadgh a5e1b3d159 Minor changes for merge conflicts 2020-04-29 16:18:02 -07:00
Tadgh 8f8a8a3dc2 Merge branch 'master' into date-match-bug 2020-04-29 16:17:50 -07:00
jamesagnew e439891ea2 Add test 2020-04-29 15:21:54 -04:00
jamesagnew 0d8c42ee1a Migrator tweaks 2020-04-29 10:13:55 -04:00
jamesagnew 885a18e0d8 Credit for #1788 2020-04-29 09:12:36 -04:00
Thomas Papke ea817de68a
Extend support for additional forwared headers x-forwarded-port and (#1788) 
x-forwarded-prefix
 2020-04-29 09:01:39 -04:00
ianmarshall 3e49e5615f Fixing merge conflicts after merge from Master. 2020-04-25 22:14:55 -04:00
ianmarshall dd749791db Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 
# Conflicts:
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
 2020-04-24 16:55:45 -04:00
ianmarshall 0e45db0ba9 More cleanup and test fixes. 2020-04-24 16:23:59 -04:00
jamesagnew e219c1774b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-04-24 05:45:26 -04:00
James Agnew ededcc18d2
Add Partitioning / Multitenancy (#1807) 
* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* Add columns

* Work on multitenancy

* Work on muiltitenancy

* Work on multitenancy

* Work on uniques

* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* More work on multitenancy

* Work on multitenancy

* Multitenancy work

* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* Work on multitenancy

* Work on docs

* Work on multitenancy

* Work on docs

* DOcs work

* Tenancy docs

* Work on docs

* Finish docs

* Add changelog

* Rename config

* Add migration tasks

* Fix typo

* Migration fix

* One more migration fix

* A couple more migration fixes

* Docs cleanup

* Work on docs

* Bump boot version

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Work on review comments

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/partitioning.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/schema.md

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/IdHelperService.java

Co-Authored-By: Ken Stevens <khstevens@gmail.com>

* Address review comments

* Compile fx

* Test fixes

* One more bugfix

* Update operation name

* Add one more constant

* Roll back a change that was causing test failures

* Test fixes

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-04-24 05:45:11 -04:00
ianmarshall 197bf2b6a8 Further refinements and test fixes. 2020-04-23 23:21:45 -04:00
jamesagnew 37aa11182d Docs fixes 2020-04-23 21:05:23 -04:00
Ken Stevens 0b1a64d093
Merge pull request #1809 from jamesagnew/ks-20200420-changelog 
retroactively add changelog for a search database change
 2020-04-23 11:39:24 -04:00
Ken Stevens b728c14b98
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_3_0/1698-remove-search-last-used-column.yaml 
Co-Authored-By: James Agnew <jamesagnew@gmail.com>
 2020-04-23 11:39:12 -04:00
jamesagnew c994f48ccd Add test case 2020-04-23 10:37:05 -04:00
James Agnew 5f88d87027
Tweak to #1801 - Normalize double leading zeros in database (#1815) 2020-04-23 09:44:08 -04:00
jamesagnew 371cda280a Test fix 2020-04-23 08:50:22 -04:00
jamesagnew 4978a5de21 Add test 2020-04-23 05:30:08 -04:00
jamesagnew ccda668d0c Restore subscription loading at startup 2020-04-23 05:28:56 -04:00
jamesagnew 36a7e9c980 Test fixes 2020-04-22 14:56:13 -04:00