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569 Commits

Author SHA1 Message Date
James Agnew dc41d5ad61
Add terminology mapping and display population interceptors (#2488) 
* Start work on code mapping interceptors

* Work on generation

* Add terminology mapping and display population interceptors

* Add changelog

* License header updates

* Test fixes

* Fix typo

* Interceptor fixes

* License header update

* Test fixes

* Mapping fixes

* Version bump

* License header updates

* Add null tests

* Add null guard

* Intermittent fix
 2021-03-21 12:03:57 -04:00
James Agnew d857048207
Preserve meta values in stored resources (#2481) 
* Fix #1731

* Test fix

* Test fixes

* Avoid intermittent failure
 2021-03-17 09:23:22 -04:00
Kunjan Patel bdee1f1269
Update points.json for adding a point in atlas (#2482) 2021-03-17 05:50:07 -04:00
Tadgh b191f1da2b
Merge pull request #2480 from hapifhir/issue-2479-bad-packages 
Have CreatePackageCommand automatically add fhirVersions based on --fhir-version flag
 2021-03-16 18:00:27 -04:00
michelgleeson 0a6c61372c
Parameterize term valueset concept view dao (#2477) 
* Generic the list type to accomidate different substring queries

* special subquery for Oracle

* change the conceptview dao depending on dialect

* address review comments

* remove generics

* no longer inherits

* copy paste from non Oracle version

* dang copy pasters

* changelog

Co-authored-by: Mike G <michel.gleeson@gmail.com>
 2021-03-16 16:26:19 -04:00
Tadgh c3e6de3aff Add changelog 2021-03-16 13:47:29 -04:00
Nick Goupinets 744adb2d08 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-15 10:32:04 -04:00
James Agnew 2e7eb972ff
Avoid NPE in ResourceVersionConflictResolutionStrategy for system request (#2471) 
* Avoid NPE in ResourceVersionConflictResolutionStrategy for system
request

* Add changelog
 2021-03-12 19:23:49 -05:00
Nick Goupinets e188a95d66 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-12 16:17:25 -05:00
James Agnew 0ad57c51bb
Fix resource reindexing on partitioned seerver (#2468) 
* Fix resource reindexing on partitioned seerver

* Add changelog

* Test fix

* Test fix

* Tets fix

* Test fix
 2021-03-12 14:14:39 -05:00
Nick Goupinets f9f0b2705d Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-12 10:30:36 -05:00
Nick Goupinets 8b8bbcc91f Refactored based on the code review 2021-03-11 17:14:01 -05:00
James Agnew 2633cbd141
Improve error message for invalid date param (#2466) 
* Improve error message for invalid date param

* Add changelog

* Test fixes
 2021-03-11 14:23:02 -05:00
Nick Goupinets 8c77882da0 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-11 09:48:39 -05:00
Tadgh 75f756b49f Add changelog 2021-03-10 15:00:54 -05:00
Tadgh b7398cb6f2 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-10 10:33:24 -05:00
Tadgh e26d757ba3 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-09 22:54:24 -05:00
James Agnew 807d9d53f0
Improve performance for large transactions (#2462) 
* Performance tweaks

* Work on processing speed

* Disable no longer relevant tests

* Work on performance

* Work on tests

* Work on large transaction performance

* Add changelog

* Perf tweaks

* Test fixes

* Resolve FIXME

* Fixes

* Test cleanup

* Fix broken changelog entry
 2021-03-09 18:16:02 -05:00
Nick Goupinets 9056c95865 Updated docs 2021-03-09 16:41:50 -05:00
Nick Goupinets 02eae95c85 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-09 14:06:33 -05:00
James Agnew be50a46d76
Tweaks to contained searches (#2461) 
* Tweaks to contained searches

* Add changelog

* Build fix
 2021-03-09 11:51:30 -05:00
Frank Tao bf8e890a0c
Supported contained resource search (#2441) 
* POC for indexing on contained resource - test case may failed

* Test contained url

* Add a spt to handle contained flag

* Added search option for contained resource

* Impl contained resource search

* fixed typo

* Reworked on creating index based on the review comments

* Added changelog

* Added more test cases

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-03-09 06:50:23 -05:00
Diederik Muylwyk 6cc8a5ce4d
Fix HasParam#doGetQueryParameterQualifier() (#2460) 
* Fix HasParam#doGetQueryParameterQualifier(); add changelog entry

* Fix bad test in SearchParameterMapTest
 2021-03-09 06:28:40 -05:00
Nick Goupinets ab4f02b2bd Added changelog 2021-03-08 18:02:40 -05:00
James Agnew 62df320ceb
Avoid a crash reading an unknown ID on partitioned server (#2451) 
* Avoid a crash reading an unknown ID on partitioned server. Fix #1953.

* Attempt 2 at fixing #1953
 2021-03-07 10:16:30 -05:00
Diederik Muylwyk 11ee6dedd3 Address CVE-2020-27223; bumped minor version of Jetty in root POM 2021-03-06 16:33:05 -05:00
Diederik Muylwyk 6035f78ddf Fix typos 2021-03-05 18:46:42 -05:00
Diederik Muylwyk 35645999d7 Add changelog entries. 2021-03-04 19:55:39 -05:00
Tadgh f5372c9f07 Fix typo 2021-03-04 16:53:52 -05:00
Tadgh 6129194353 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-04 16:53:20 -05:00
Tadgh 2f1518344b Add changelogs, add patientbulkredaer implementation 2021-03-04 16:53:05 -05:00
Diederik Muylwyk 8dcac3e8b7
Improved generic client docs to remind of client.search.byUrl for params like _has. (#2440) 2021-03-03 18:34:18 -05:00
James Agnew db44244405
Fix #2426 - Include modifiers in generic search URLs for map (#2428) 2021-02-28 10:33:43 -05:00
Tadgh 74066a81b6
Merge pull request #2420 from hapifhir/issue-2401-add-support-for-group-id-export 
Issue 2401 add support for group id export
 2021-02-26 10:23:42 -05:00
Ken Stevens 7d769e3b05
Issue 2332 create via put for implementationguide that references some placeholders (#2423) 
* begin with failing test

* fixed.  test passes.

* documentation and changelog

* added ConceptMap

* review feedback
 2021-02-26 09:44:48 -05:00
Tadgh 1663e367a6 Address review comments 2021-02-25 16:23:36 -05:00
Tadgh 3937d2ef01 Remove some dead code 2021-02-24 15:57:55 -05:00
Tadgh 8e45a84927 Add changelog 2021-02-24 15:28:52 -05:00
Kevin Hartmann 3b60034a08 Added Changelog entry 2021-02-24 15:25:36 -05:00
michaelabuckley ad6431b24c
Merge pull request #2418 from hapifhir/add-changelog-for-mdm-update 
Add MDM FHIRPath Changelog
 2021-02-24 13:52:22 -05:00
Patrick Werner cf1f2f27db
added nullchecks to prevent NPE (#2417) 
* added nullchecks to prevent NPE
fixes #2171

* Add test from #2171 and changelog

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-02-24 10:09:04 -05:00
Ken Stevens 30905aeba7 Merge remote-tracking branch 'origin/master' into issue-2401-add-support-for-group-id-export 2021-02-24 09:38:59 -05:00
Tadgh 66b59ae327 Update issue number 2021-02-24 09:22:10 -05:00
Tadgh 5ee7793ac4 Add MDM Changelog 2021-02-24 09:20:45 -05:00
Tadgh 29eabbd4f0 Add skeleton 2021-02-23 18:42:41 -05:00
Tadgh ecacef0498 Add bulk export md file 2021-02-23 18:39:25 -05:00
Tadgh c92f302d41
Merge pull request #2410 from hapifhir/2409-support-fhirpath-in-field-matchers 
Support FHIRPath in field matchers if present
 2021-02-23 09:48:14 -05:00
James Agnew b108e43600
Allow partition date for non-partitionable resources (#2407) 
* Allow partition date for searchparam resources

* Cleanup

* Test fix

* Documentation update

* Docs tweak
 2021-02-22 20:49:09 -05:00
Tadgh 18b61f21d0 re-add only relevant code 2021-02-22 18:23:03 -05:00
Jens Kristian Villadsen 65c9f5fbf8
Update repository_validating_interceptor.md (#2368) 
Refined the wording on the repo interceptor
 2021-02-22 07:28:49 -05:00