33b8e82f79
Compile fix
2020-04-21 09:29:23 -04:00
544d9fbc6c
Add migration tasks
2020-04-20 16:58:48 -04:00
95b77af570
Merge branch 'master' into ja_20200206_multitenancy
2020-04-20 11:07:10 -04:00
42c8cd0e38
Add cascading delete to client ( #1804 )
...
* Add cascading delete to client
* Add changelog
2020-04-18 11:16:16 -04:00
461739fb32
Add test for millisecond precision
2020-04-18 11:15:32 -04:00
48057b9d8e
Merge branch 'master' into ja_20200206_multitenancy
2020-04-17 17:59:48 -04:00
e0b419354f
Bump up hamcrest version and force the use of the latest version
2020-04-17 13:59:22 -04:00
497757501b
Improve search method binding priority ( #1802 )
...
* Work on search method binding priority
* Work on method priority
* Work on binding priority
* Test fixes
* Add changelog
* Test fixes
* compile fix
* One more comple fix
* Test cleanup
* Test fix
2020-04-17 09:28:33 -04:00
d822867a4a
Merge branch 'master' into ja_20200206_multitenancy
2020-04-15 22:12:20 -04:00
f95f619bdc
Correct two JPA processing bugs ( #1801 )
...
* Work on search params on contained
* Add workaround for stored decimals with leading decimal point
* Add changelog
* Cleanup
* Test fix
* Test fix
* One more test fix
2020-04-15 14:22:47 -04:00
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
c1d682ed02
Test fixes
2020-04-09 12:36:33 -04:00
879fbb0bf8
Test fixes
2020-04-09 10:34:18 -04:00
2a43aa3b6c
Improve error message reporting for invalid json - Fix #1793
2020-04-09 09:53:13 -04:00
8cdc3a72ce
Fix #1794 - Client ID and Server ID mode clash ( #1795 )
...
* Fix #1794 - Client ID and Server ID mode clash
* Try to track down intermittent test failure
2020-04-09 09:31:13 -04:00
c0df88739a
Intermittent test fix
2020-04-08 19:19:30 -04:00
40d0c27ae3
Work on subscription cleanup
2020-04-05 18:43:27 -04:00
fe48313100
Add response size capturing interceptor ( #1776 )
...
* Work on capturing repsonse sizes
* Interceptor complete
* Add changelog
* Test fix
2020-03-30 11:24:10 -04:00
b794618e9d
Avoid a crash encoding contained bundle ( #1778 )
...
* Avoid a crash encoding contained bundle
* Add changelog
* Apply same fix to XML
* Fix typo
2020-03-25 21:20:10 -04:00
eaaddaf7ca
Fix #1763 - Include bundle type in summary=count responses ( #1773 )
...
* Fix #1763 - Include bundle type in summary=count responses
* Test fix
2020-03-24 16:24:41 -04:00
2c1ec8fb0d
add test to check that json parsing also fails with identically named contained resources
2020-03-23 19:09:54 -04:00
a75bf948c1
Remove personal data
2020-03-23 19:09:54 -04:00
2b23a6f2f0
Fix Xml parse issue: do not override the references with global contained resources if they have already been resolved
2020-03-23 19:09:54 -04:00
14316147c5
Resolve some docs issues
2020-03-23 10:34:12 -04:00
f89661526c
Missed noe rename in #1769
2020-03-22 13:27:04 -04:00
c2ae5a8326
Add FHIRPath evaluation interceptor ( #1769 )
...
* Add FHIRPath evaluation interceptor
* Add changelog
2020-03-22 12:57:24 -04:00
bde7c356fe
Implement Jackson parser/serializer ( #1733 )
...
* [dev] Integration of a Jackson serializer and deserializer - first stage
* [fix] Fixed some serializing issues
[improve] Improved the processing, removed the loggers
* [clean] Removed the JacksonSerializer class, replaced all the Gson classes with Jackson classes
* [clean] Small cleanup
* [improve] Throw a ConfigurationException if the JsonGenerator cannot be created
* [improve] Use the ObjectMapper's `readTree` instead of `readValue`
* [dev] Latest fixes and improvements
* [dev] Use the Jackson serializer
* [clean] Removed the ObjectMapper configuration, for now
* [fix] Use the GsonStructure also for the parsing of a FHIR resource
* [clean] Removed the LinkedList usage
* Work on preparing for merge of #1673
* Resolve build errors
* Work on parser integration
* Tests passing
* Resolve fixme
* CLeanup
* Fix dependency
Co-authored-by: Bogdan Solga <bogdan.solga@gmail.com>
2020-03-17 17:27:26 -04:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
5bc554949b
Remove deleted resources from cached search results ( #1732 )
...
* Remove deleted resources from cached search results
* Add changelog
* Add tests
2020-02-28 10:57:26 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
...
* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
e6d3897700
Add tests
2020-01-30 08:49:40 -05:00
a6f3ee8319
Add a unit test
2020-01-29 09:35:22 -05:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
0e1f03b999
Work on validation
2019-12-19 14:41:35 -05:00
549b1c85c3
Test fix
2019-12-12 05:43:05 -05:00
d277d3fed5
Docs updates
2019-12-10 16:10:09 -05:00
f58fba6f04
Some test cleanup ( #1616 )
...
* Some test cleanup
* Add test
* More test logging
* More docs cleanup
* Add test logging
2019-12-02 11:00:18 -05:00
7745dc4ad4
Don't require fhir core javadocs by default
2019-11-26 02:22:09 -03:00
5f803f7e68
Documentation updates
2019-11-26 02:00:22 -03:00
ca620d652f
Add tests ( #1606 )
...
* Support chained HAS
* Add some tests
* Add some cleanup
* Work on intermittent tests
2019-11-24 10:11:49 +01:00
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
...
* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
1a348abaf5
Try to fix 2 intermittent test failures
2019-11-08 08:45:08 -05:00
3b6709e1d1
Merge pull request #1566 from jamesagnew/ja_20190928_rationalize_search_param_extractor
...
Rationalize search param extractors across FHIR versions
2019-11-02 16:18:23 -04:00
80bfb9af37
Issue-1077: Make CapabilityStatementProvider use the closest common superclass of provided resources when generating rest.resource.profile, instead of always using the base definition.
2019-11-01 10:20:16 -04:00
b90f285218
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-30 08:41:14 -04:00
9c852283e9
Correctly handle "special" search params in CS ( #1569 )
...
* Correctly handle "special" search params in CS
* Add another test
2019-10-30 05:31:25 -04:00
817f9ae36e
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-27 17:25:20 -04:00
6580c98ed7
Work on extractor
2019-10-26 16:56:12 -04:00
74c03b5bb7
Add a test
2019-10-24 08:32:52 -04:00
385a885abf
Add ability for resource source to be specified by header
2019-10-24 08:32:52 -04:00
464c6c5b45
Upgrade dependencies and addess Semmle issues ( #1554 )
...
* Version bumps
* FIx build issues
* Address a few Semmle issues
* Work on tests
* Some test fixes
* Test fix
* Fix deletions
* Test fix
* Fix intermittent test failure
* One more dependency bump
* Add some test logging
* Remove bad import
* Add some tests
* Test updates
2019-10-22 17:10:58 -04:00
a71d969ba1
Add line numbers to validation failures
2019-10-18 14:10:47 -04:00
12a74e6cbc
Fix term uploads and validate against valueset recalculation ( #1540 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Work on upload command
* Test fixes
* Work on validation fixes
* Work on validation against pre-expansion
* Work on direct validation
* A bit of cleanup
* Add some javadoc
* Force another build
* Test fixes
* Fix tests
* Fix tests
2019-10-15 21:31:29 -04:00
2725797610
Implement Terminology Delta Operations ( #1536 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Test fixes
2019-10-14 19:14:41 -04:00
92c6b88964
Add test
2019-10-10 07:16:18 -04:00
1f1b94a566
Resolve XXE issue in validator ( #1530 )
...
* Resolve XXE issue in validator
* Ensure that we're blocking XXE events into validator XML parser
* A bit of cleanup
* Add an LGTM config
* Add one more fix
2019-10-08 13:06:03 -05:00
53f47fbb1e
Merge remote-tracking branch 'remotes/origin/master' into ks-narrow-search-pointcut
2019-10-03 12:20:20 -04:00
d1deedf247
pre-review cleanup
2019-10-03 12:14:11 -04:00
566443d0fe
move BundleUtil back
2019-10-03 12:05:26 -04:00
98c76a4d49
Test passes
2019-10-03 12:03:38 -04:00
29e7cdc476
Added ability to modify URLs in BundleUtil
2019-10-03 09:46:32 -04:00
db668d96b9
Add a few tests and remove some dead code
2019-10-03 09:00:14 -04:00
2193a30b45
CodeSystem Delta Uploader ( #1520 )
...
* Terminology Delta Uploading
* Add delta operations
* Fix up tests
* Improve test coverage a bit
* Improve test coverage reporting
* fix yaml
* A couple of test enhancements
* FIx intermittent test failure
2019-10-03 07:19:00 -04:00
08825a81d9
Add missing @Override annotations
...
Added missing @Override annotations so that if/when methods in superclasses change
there will be a compile-time error if subclasses haven't been changed accordingly.
This was done using IntelliJ IDEA's "Missing @Override annotation" inspection.
2019-10-02 05:45:59 -04:00
fd16b9efca
Merge branch 'master' into oliveregger_#402
2019-09-30 20:19:25 -04:00
066c9a7fb7
Improvements to AutohrizationInterceptor create handling
2019-09-30 15:07:23 -04:00
0bee7a7b53
Test fix
2019-09-30 10:12:49 -04:00
c8ce07c40e
Deprecate redundant IVersionSpecificBundleProvider method
2019-09-30 09:45:31 -04:00
557a8ccc66
Add top level support for ElasticSearch ( #1514 )
...
* ElasticSearch work
* Add ElasticSearch properties builder
* Clean up POM
* Remove redundant project
* Try to troubleshoot embedded elasticsearch
* Another test attempt
* Add credentials to elasticsearch config
* Work on lastn
* Address review comments
* A couple of test fixes
2019-09-30 09:30:39 -04:00
8657afb01e
Fix intermittent test failures regarding search ( #1509 )
...
* Add some logging
* Add more test logging
* Work on some test logging
* Fix compile error
* Work on codecov
* Work on codecov
* Remove test debug messages
2019-09-25 20:15:21 -04:00
57377f5557
Fix #1483 - Don't let RP methods handle a request with includes if the
...
method doesn't understand them
2019-09-25 10:54:37 -04:00
58b7e3a923
Start splitting docs into separate project
2019-09-22 08:58:17 -04:00
a989a746b0
Fix #1494 - Upgrade to new :recurse syntax for R4 include/revinclude
...
statements
2019-09-20 09:38:29 -04:00
20d33afb6f
Credit for #1489
2019-09-19 20:48:17 -04:00
6f6cc960ad
Add timing tests
2019-09-19 20:39:16 -04:00
eddb98084d
Move PreferReturnEnum back to original location to avoid regressions
2019-09-19 15:48:58 -04:00
5e74a6f3e8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-17 16:01:53 -04:00
4a751cbfc5
Integrate Bulk Export ( #1487 )
...
* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
d3c8962ae6
Add some tests
2019-09-17 14:04:35 -04:00
08835c1615
FIx a failure in FhirTerser when visiting custom types
2019-09-13 09:11:47 -04:00
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
7d162c50db
Don't guess content type for create/put
2019-09-05 14:47:04 -04:00
ce879b3863
Fix versioned API incompatibility with GraphQL
2019-08-20 08:35:27 -04:00
74c83f6148
Test fixes
2019-08-17 12:01:04 -04:00
afb682dfe9
Handle AuthorizationInterceptor rejection of by-type reads on the wrong type earlier in the process
2019-08-15 09:16:45 -04:00
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
b127867ef7
Fix responsehighlighterinterceptor to work with graphql
2019-08-13 18:00:30 -04:00
33767b5399
Test fix
2019-08-13 16:12:28 -04:00
94c498a744
A but more tweaking to the graphql interceptor
2019-08-13 16:05:33 -04:00
bb20c2134b
Issue-1387: Read version from resource meta when deciding whether to return 304 on read
2019-08-13 05:28:03 -04:00
c04f1d15d8
Fix #1399 - Issue with DiagnosticReport R4 narrative generation template
2019-08-12 17:17:45 -04:00
0c9e5ec1ea
Support GraphQL for R3/4/5 ( #1424 )
...
* Work on grpahql enhanbcements
* Add some more chars to the sanitizer function
* Add changelog
2019-08-12 08:24:32 -04:00
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
46c8c61932
Restore build - May need to roll back the RDF changes
2019-08-01 10:14:56 -04:00
a4ca5374ec
Add terminology delta operations ( #1401 )
...
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
8158292665
Allow operations to better work across multiple versions of FHIR
2019-07-26 05:46:37 -04:00
7e3d062d15
Switch default client to JSON ( #1392 )
...
* Start work on changing over
* Update tests
* More test fixes
* Work on generalizing binary access provider a bit
* Add expunge capability to binary storage, and also support actual binary
resources
* Work on binary provider
* Get the DB bound binary storage service working
* Test fixes
* Compile fix
* Fix compile error
* Test fix
* Test tweak
* Trying to figure out an intermittent failure
* Work on tests
* More work on tests
* Another test fix
2019-07-22 21:27:10 -04:00
55c0d5b604
Add binary storage for Attachments ( #1386 )
...
* Have this working now
* Add utility method
* Build fixes
* Add changelog
2019-07-17 18:31:17 -04:00
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
...
* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
75f0dc993c
Try to prevent an intermittent test fix
2019-07-11 21:39:41 -04:00
a352137938
Test fixes
2019-07-11 21:10:30 -04:00
34f7d4ddbd
Refactor ServerConformanceProvider so that it no longer keeps any state
2019-07-07 12:57:31 -04:00
56aaef641c
Add request ID
2019-07-02 21:32:28 -04:00
742389642d
Add tests for delete conflicts and authorizationinterceptor
2019-07-01 10:49:38 -04:00
5c0e54fb86
Improve processing of deletes in AuthorizationInterceptor
2019-06-29 14:40:51 -04:00
1fd99dac63
Enable optional cascading deletes on JPA server ( #1363 )
...
* Start working on cascading deleets
* WOrk on cascading deletes
* Work on cascading deletes
* Enable cascading deletes
* Cascade deletes almost working
* FIx test
* Test fix
2019-06-28 17:32:39 -04:00
10d969c514
Add Consent Service ( #1359 )
...
* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
3274693576
FIx a test
2019-06-22 16:31:55 -04:00
95876ec3cb
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-06-22 16:24:07 -04:00
638cb976fd
Fix #1250 - Don't include Bundle.entry.response on search results
2019-06-22 16:23:32 -04:00
4ad1808da3
Propagate RequestDetails to everything in JPA server ( #1358 )
2019-06-22 15:18:06 -05:00
6724fd0348
Implement the $subsumes operation ( #1344 )
...
* Implement the $subsumes operation
* Fix #976
2019-06-17 17:31:24 -04:00
b56f59542a
Move JettyUtil to new module
2019-06-14 18:34:45 -04:00
aab7bb6b64
Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities.
2019-06-14 18:34:45 -04:00
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
cd8b2feb2f
Allow to set additional Http headers directly on the IClientExecutable
2019-05-29 21:17:52 -04:00
24c9c27abb
overwritten section text in composition #402
2019-05-29 23:18:18 +02:00
6b37525f2d
Clean up redundant dependencies ( #1306 )
...
* Remove a bunch of unneedd deps
* Test fix
* Disable useless test
2019-05-09 12:51:13 -04:00
37b9e1a42c
Improve validation of enableWhen questionnaires
2019-04-29 14:43:42 -04:00
7f45660a15
changed toListOfResources to send IBaseResource as Type instead of null
2019-04-26 12:55:18 +02:00
f3f5c570b1
A couple of compile glitches
2019-04-24 21:35:49 -04:00
738c2c1797
Interceptor framework refactoring ( #1287 )
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Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
210d99d121
Correct validation of questionnaire enableWhen
2019-04-17 16:50:37 -04:00
15fda25771
added fetchValueSet to IValidationSupport and made it public to enable overwriting it in subclasses
2019-03-27 17:35:01 +01:00
e85bec2858
Ja inline references ( #1252 )
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* Use a single IN clause for OR reference searches
* Add changelog
* One more attempt at getting the free port util to actually work... sigh
* One more tweak to free ports
* Bundle fix
2019-03-26 10:42:42 +01:00
3433ecfd14
Test fixes
2019-03-11 16:14:34 -04:00
dcfacfea49
Has param no in ( #1232 )
2019-03-10 20:50:24 -04:00
48c10bddc5
Narrative Generator refactoring ( #1219 )
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* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
2019-02-27 14:59:57 -05:00
87ed00a002
Add ability to generate named parametrrs in a version independent way
2019-02-15 16:27:16 -05:00
10c348d44f
Tweak to elements parametr support
2019-02-14 19:30:10 -05:00
810f1ad969
Improvements to elements parameter as well as adding attributes to
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RequestDetails
2019-02-07 16:45:59 -05:00
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
9a8e3245b8
Build fixes
2019-02-05 15:00:36 -05:00
4498335ae5
Elements query cleanup
2019-02-05 14:16:47 -05:00
d4af1ee2a3
Add tests and license headers
2019-02-04 16:34:39 -05:00
e401ec86e4
Enhanced elements ( #1192 )
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Squashed merge: Add elements exclude mode
* Start working on elements enhancement
* Work on elements projection
* Work on elements filter
* Feature is now working
* Just some cleanup
* Address compile issues
2019-02-03 16:41:33 -05:00
b7ba529353
Merge pull request #1114 from zilin375/hapiFhir001
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Fix NPE
2019-02-02 11:31:43 -05:00
737ee9e97c
add JSON-like tests for DSTU3 and R4
2019-01-30 17:32:06 -08:00
68fae08f20
Fix casing in base64Binary type
2019-01-23 08:34:09 -05:00
9cf64f78d0
Deprecate a bad setter on RetfulServer, fix a paging issue, and add a
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disabled unit test to the subscription matcher
2019-01-21 14:46:17 -05:00
93bf2788ec
Add subscription narrowing interceptor and refactor RuleBuilder to be a
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bit cleaner
2019-01-12 14:23:26 -06:00
fc09ed6966
Fix #1163 - Correctly handle invalid CapabilityStatement
2019-01-11 08:01:48 -07:00
ee52d6fb31
Add SearchNarrowingInterceptor
2019-01-09 20:20:46 -06:00
b3c9b32db4
Credit for #1065 and forward-port fix to R4 provider
2019-01-09 07:19:55 -05:00
39f2062802
FIx errorprone detected issues
2019-01-05 13:43:55 -05:00
5b8fee869e
Add config options for default Prefer header and _total param on server
2019-01-04 16:12:45 -05:00
8c87c7c089
Correct an issue detected by ErrorProne
2019-01-04 14:28:38 -05:00
14a132a937
Squashed commit of the following:
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commit 965965583070da25b76f
2018-12-27 17:58:47 -05:00
6eb4c28e7c
More merging
2018-12-27 17:58:08 -05:00
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
6e0a9525a1
Remove dependency on public test server in unit test
2018-12-20 06:28:01 -05:00
19954fa252
Resolve failing test
2018-12-09 14:09:12 -05:00
b442982310
Add media interceptor
2018-12-08 18:49:58 -05:00
b41c222880
Require explicit declaration of authorizationinterceptor operation rules
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on whether the response is authorized or not
2018-11-23 14:25:46 -05:00
719339fc14
One more test fix
2018-11-19 10:27:16 -05:00
2e1d5e4124
Fix an occasional NPE in the tests
2018-11-19 09:56:40 -05:00
58388bb614
Allow client to return methodoutcome instead of resdource for operation
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call
2018-11-19 11:11:49 +01:00
67dbc802be
Better detection of binary content in ResponseHighlighterInterceptor
2018-11-18 14:32:54 +01:00
0d0f67b299
Add GraphQL support to public server
2018-11-16 11:41:39 +01:00
952dc7dd01
Fix NPE
2018-11-14 09:24:27 +01:00
cc57bacab8
Version bump to 3.7.0-SNAPSHOT
2018-11-12 10:07:28 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
b32e232eb2
A bit of client tweaking
2018-11-08 17:10:39 -05:00
01c7618867
Failing test cleanup
2018-11-08 15:46:49 -05:00
82ec721c99
Allow client defined parameter style for _format param
2018-11-08 15:27:35 -05:00
bbce2c69cf
Fix typo
2018-11-01 05:51:26 -04:00
6b1ea5b989
Add tests for operation method binding
2018-10-30 15:22:39 -04:00
b66e01ce65
Allow plain server @Operation methods to declare a wildcard so that any
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opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
aa177c1421
Authorize batch operation in AuthorizationInterceptor
2018-10-19 09:45:56 -04:00
c8db7fe035
Add a test
2018-10-18 15:12:22 -04:00
4e252063b8
Allow transactions and batches with transaction permission in
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AuthorizationInterceptor
2018-10-16 19:54:55 -04:00
b44e96a5cd
Merge branch 'philips-3.6.0'
2018-10-15 08:37:00 -04:00
51a69f0dc9
Fixes to migrator and count logic
2018-10-13 12:02:19 -04:00
90a3ead24f
Merge pull request #1089 from srdo/issue-545
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Issue-545: Base resource profile links should point to http://hl7.org …
2018-10-09 12:05:47 +02:00
c64567be68
More redundant test cleanup
2018-10-04 09:15:12 -04:00
597c8dbafe
Remove redundant tests
2018-10-04 08:57:37 -04:00
95f00e1c94
Fix NPE in tests
2018-10-04 08:33:40 -04:00
2050355e1e
Issue-545: Base resource profile links should point to http://hl7.org/fhir/StructureDefinition (invariant sdf-7 in spec)
2018-10-03 13:36:34 +02:00
12b23fbf23
Make JPA searches more efficient by prefetching a much smaller number of
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resources
2018-10-01 21:36:10 -04:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
002c4b3ff7
Add retrigger subscription operation
2018-09-27 20:03:01 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
ce6a9dbc36
Fix regression from new jetty version
2018-09-11 08:27:34 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
77305eb570
Work on migrator
2018-09-04 10:32:08 +08:00
f4a21eadda
Fix this issue
2018-09-01 14:38:52 +08:00
fee0166800
Work on removing validstion cache
2018-08-28 05:26:06 -04:00
54c07263b6
Increase code lengths
2018-08-26 12:32:35 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
bc1ee1f9dc
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-08-13 11:54:36 -04:00
78a7d64d2c
Merge pull request #1022 from alinleonard/master
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Patch operation on OperationsWhichAllowPreferHeader
2018-08-12 17:55:16 -04:00
4eb3281fa6
Merge branch 'client_enhancements'
2018-07-30 18:34:49 -04:00
4fcaf37729
Test cleanup
2018-07-30 18:34:28 -04:00
d6293cf9b3
Merge branch 'client_enhancements'
2018-07-30 09:42:38 -04:00
db0f082222
Merge pull request #996 from anamariaradu10/master
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Changes regarding behavior for Prefer header
2018-07-30 09:16:20 -04:00
0f1724ac0a
Credit and a unit test for #912
2018-07-30 05:48:38 -04:00
fc9f2ec0fb
FIx test issue
2018-07-29 18:20:09 -04:00
518092cbd4
More updates
2018-07-29 17:10:26 -04:00
3a5556006b
Merge branch 'master' into master
2018-07-27 16:59:52 +03:00
9c39733aff
Fixed issues
2018-07-27 16:48:44 +03:00
75a68a0332
Unit test fix
2018-07-26 18:58:23 +07:00
a4e4111376
Fix a unit test
2018-07-26 18:08:59 +07:00
3c80238f0e
Ongoing work on interceptors
2018-07-24 17:22:21 +07:00
23083a9283
Improvements to client and SP indexing in JPA server
2018-07-23 17:37:49 +09:00
b4aa4c0e89
Add protection against HTML injection attacks
2018-07-19 08:56:22 -04:00
a9291b4e4b
Add security test
2018-07-19 08:09:07 -04:00
e6ca408f67
Permissions for operations
2018-07-12 18:40:15 -04:00
03e7b018a6
Add skeleton for the $process-message operation in JPA erver
2018-07-12 17:52:24 -04:00
62c7c0fa55
fixed the AuthorizationInterceptorR4Test return code based on fhir doc
2018-07-09 16:43:31 +03:00
b929864873
Merge branch 'improve_jpa_indexes'
2018-07-01 12:08:03 -04:00
495fd9f68e
Add support for patch in AuthorizationInterceptor
2018-07-01 11:46:11 -04:00
e5cb609f4d
Performance improvements
2018-06-24 20:02:27 -04:00
e9fffd3cdc
Allow indexing in custom search params to descend into contained
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resources
2018-06-22 11:22:07 -04:00
ed0b5f54a5
More authorizationinterceptor tweaks for better security
2018-06-12 21:52:01 +08:00
cc0e836680
Auth interceptor early checks ( #995 )
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* Validator fix
* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.
* FIx DSTU2 test that wasn't updated
* More test fixes
2018-06-10 17:48:20 -04:00
6feb23896f
Hopefully fix #983
2018-06-06 15:51:23 -04:00
987679483a
Version bumps
2018-06-03 15:29:10 -04:00
9db3be8536
Include implementation URL in generated capabilitystatement
2018-06-03 14:22:15 -04:00
d127a89047
Some test fixes
2018-05-30 11:01:43 -04:00
a52805e504
Work on JDK9 support
2018-05-30 05:45:08 -04:00
7951d883d0
Merge branch 'master' into java9
2018-05-29 08:43:21 -04:00
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
27d0d4d7af
Fix build failure
2018-05-28 11:51:26 -04:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
67f21426cb
Disable content header on response for non-create operations
2018-05-25 07:28:01 -04:00
a3687e446e
Correctly handle missing search params with new indexing infrastructure
2018-05-23 11:42:38 -04:00
2f2900e837
Improve indexing on JPA server in anticipation of a new indexing
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strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
98d997c620
Add changelog and credit for #867
2018-05-23 06:21:00 -04:00
4d93b78c24
Credit for #836
2018-05-22 08:44:17 -04:00
07d0cc7876
Merge branch 'master' into bpCheckValFix
2018-05-17 09:53:41 +02:00
78f9d6333a
temp. fixed: "Attempt to read a single element when there is more than one present" #949
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Will be overwritten by next RI import!
2018-05-17 09:43:35 +02:00
730d02b7c6
added R4 core-extension validation support
2018-05-16 18:51:55 -04:00
d29a9a7f96
AutohrizationInterceptor should correctly recognize type-level operation
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invocations
2018-05-15 16:14:10 -04:00
4d62120a18
Fix issues reported by errorprone
2018-05-15 08:44:15 -04:00
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
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* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
3d762b984b
Sync to R4 definitions
2018-05-12 19:35:42 -04:00
b17eebd8d2
Squashed commit of the following:
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commit 2be11651c2b3bb5f9052f6b1082ba481a69c265f935938e92c43568a1f8de95894e6439393fb8f4f437f5051e420c51add4f7bf2b0a0e9adc73e75c9
2018-05-10 11:53:32 -04:00
7688be1231
Work on getting java9 building
2018-05-03 18:34:29 -04:00
593a705365
Performance enhancements on the CapabilityStatement generator for JPA
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server
2018-04-28 11:06:42 -04:00
09b1f547d0
Add expunge
2018-04-24 15:11:00 -04:00
07e7af746f
Work on expunge operation
2018-04-22 22:03:23 -04:00
a21d0a7752
Add auth tester methods
2018-04-22 19:30:09 -04:00
591539cf13
Add expunge method
2018-04-22 18:34:56 -04:00
8c889267e5
One more parser fix
2018-04-18 06:20:11 -04:00
162069776a
Correctly handle encoding contained resources where some have user
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assigned IDs and some do not
2018-04-17 18:26:06 -04:00
c5b286921e
Tests all passing
2018-03-30 15:18:57 -04:00
180336e076
Sync to master
2018-03-29 06:54:24 -04:00
53c2d8a38d
Merge branch 'master' into loinc_loader_update
2018-03-29 06:21:55 -04:00
418e82032f
Prep for 3.3.0
2018-03-29 05:48:13 -04:00
d9c167455e
Make sure we correctly clean up resources
2018-03-27 15:20:22 -04:00
b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi
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Implement #826 - add OSGI support and Apache Karaf features with inte…
2018-03-27 06:06:34 -04:00
29c09e40f0
Merge pull request #858 from patrick-werner/master
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added Test for #11 to Dstu3 and R4, fixed #853
2018-03-24 06:31:24 -04:00
308ac63a77
Merge branch 'master' into loinc_loader_update
2018-03-20 07:53:41 -04:00
6359f7f8a1
More work on loinc
2018-03-19 08:51:02 -04:00
ff04ab3358
${argLine} -> [at]{argLine}
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see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
0cee57392a
Merge remote-tracking branch 'upstream/master'
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# Conflicts:
# hapi-fhir-validation/src/test/java/org/hl7/fhir/r4/validation/FhirInstanceValidatorR4Test.java
2018-03-07 11:45:31 -03:00
e201091e3a
Update licenses for changed files
2018-03-04 13:53:04 -05:00
d22670ddb5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-04 12:21:07 -05:00
2f7751a079
Move stopwatch into hapi-fhir-base and add timing into to client
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LoggingInterceptor
2018-03-04 12:13:18 -05:00
8bdca012d6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-03-04 11:04:07 -05:00
07290ae8a0
Sync to latest R4 code
2018-03-04 11:02:47 -05:00
b2ceb87a70
Work on #873
2018-03-03 17:50:29 -05:00
0c0b9bd74b
Fix #814 - Don't create duplicate contained resources
2018-03-02 09:46:29 -05:00
66ebfa0ed3
Implement #826 - add OSGI support and Apache Karaf features with integration tests
2018-02-28 11:32:53 +01:00
458401864b
Handle deletes properly in HashMapResourceProvider
2018-02-25 14:20:04 -05:00
84c72203b7
Add HashMapResourcePrvider
2018-02-25 13:16:02 -05:00
a8f3c2efb6
added Test for #11 to Dstu3 and R4
2018-02-21 16:03:31 +01:00
84dcd51091
Add tests for #814
2018-02-12 09:25:59 -05:00
e4785b17b5
Add test
2018-02-08 17:50:45 -05:00
a395e48cd4
Don't crash when a multitenant server has a request for /
2018-02-04 18:44:37 -05:00
371be03b0f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-02 13:20:09 -05:00
0e2d55081f
Fix a crash when no count parameter supplied
2018-02-02 12:31:59 -05:00
351a2fc2f1
Fix #837 - Use non-legacy content-type for plain json and xml accept
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header
2018-02-02 06:43:19 -05:00
b61887e841
Improve performance of base64 validation
2018-01-30 17:37:12 -06:00
f7f69f6148
Ad some tests for #837
2018-01-26 08:39:46 -05:00
5750cfd03c
Prevent double calling server interceptor methods under certain
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conditions
2018-01-26 07:44:13 -05:00
0677f35847
Implement tenant ID checking in authorizationinterceptor
2018-01-23 11:32:35 -05:00
16038ece26
Version bump to 3.3.0-SNAPSHOT
2018-01-23 10:31:01 -05:00
3644151a69
Fix crash in JSON parser when parsing extensions on primitive elements
2018-01-18 09:07:23 +07:00
6468ca474a
Verion bump to 3.2.0
2018-01-13 02:14:33 -05:00
01186ec8cb
Squashed commit of the following:
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commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Jan 12 18:59:15 2018 -0500
Tests all passing
commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Jan 12 08:21:58 2018 -0500
Almost compiling
2018-01-12 18:59:43 -05:00
f6c9e3d0fe
Add multitenancy support for server
2018-01-11 11:14:54 -05:00
9a72927dbc
Fix #808 - Use version from meta if not found in the resource ID
2018-01-08 14:07:27 -05:00
377bae8c16
Allow interceptors to modify request contents
2018-01-06 14:27:32 -05:00
19863de012
Update javadocs on IdType
2017-12-19 15:57:22 -05:00
44ec091b35
Still more test tweaks
2017-12-13 13:29:24 -05:00
3e296f9d1b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-11-25 17:53:01 -05:00
6afe6804db
Fix #796 - Correctly escape spaces in generated URLs
2017-11-25 17:52:12 -05:00
jamesagnew
David Gileadi
August Langhout
Stig Rohde Døssing
Ken Stevens
Clayton Bodendein
Stig Rohde Døssing
Stig Rohde Døssing
Christian Ohr
Oliver Egger
patrick-werner
Ken Stevens
bdenton
axdad
anamariaradu10
Ana Maria Radu
Alin
Diederik Muylwyk
jpoth