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4442 Commits

Author SHA1 Message Date
jamesagnew d4af1ee2a3 Add tests and license headers 2019-02-04 16:34:39 -05:00
James Agnew edb79b8c6a Updates to parser dont encode elements functionality 2019-02-04 16:34:05 -05:00
James Agnew 88eb2c424e formatting 2019-02-04 13:50:47 -05:00
James Agnew 87a6c24bde More subscription logger work 2019-02-04 13:49:10 -05:00
James Agnew e401ec86e4
Enhanced elements (#1192) 
Squashed merge: Add elements exclude mode

* Start working on elements enhancement

* Work on elements projection

* Work on elements filter

* Feature is now working

* Just some cleanup

* Address compile issues
 2019-02-03 16:41:33 -05:00
James Agnew 447c394cac
Ja subscription debug logger (#1190) 
Squashed commit adding subscription debug logger

* Work on subscription debug logger

* Add subscription logging interceptor

* Remove unneeded variables

* A bit of cleanup

* Tweak the output logs a bit

* Address review comments
 2019-02-03 16:33:54 -05:00
James Agnew b928af7bc0
Merge pull request #1191 from jamesagnew/standalone-subscription-delete-fail 
Standalone subscription delete fail
 2019-02-03 16:32:57 -05:00
Ken Stevens 4a49a9362e just clearing the cache doesn't shut down the channel consumers. Switching to unregisterAll 2019-02-02 19:26:20 -05:00
Ken Stevens 84db66d2e3 fixed 2019-02-02 19:07:06 -05:00
Ken Stevens 37670ac039 actually, we shouldn't be trying to match on deleted resources. Corrected assertion in test. 2019-02-02 19:00:14 -05:00
Ken Stevens 4106d67eb7 ready for review 2019-02-02 18:03:09 -05:00
Ken Stevens dd0b56142d found another bug in standalone subscriptions 2019-02-02 17:14:05 -05:00
Ken Stevens 3662d080d0 Merge branch 'master' into windows-fixes-2 
# Conflicts:
#	hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/BaseApp.java
 2019-02-02 13:16:23 -05:00
Ken Stevens 6616fbc9bb added CannonicalSubscription.toString() 2019-02-02 13:15:07 -05:00
jamesagnew 86a12bcf2a Credit for #1114 2019-02-02 11:33:08 -05:00
James Agnew b7ba529353
Merge pull request #1114 from zilin375/hapiFhir001 
Fix NPE
 2019-02-02 11:31:43 -05:00
jamesagnew ea84f2c377 Version bump hibernate search 2019-02-02 11:26:19 -05:00
Ken Stevens f40148fba5 Merge branch 'master' into windows-fixes-2 
# Conflicts:
#	hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/ResourceModifiedMessage.java
#	hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/FhirObjectPrinter.java
#	hapi-fhir-jpaserver-subscription/src/test/java/ca/uhn/fhir/jpa/subscription/module/PointcutLatch.java
#	pom.xml
 2019-02-01 16:40:49 -05:00
Ken Stevens 9280cde491
Subscription only registers active (#1189) 
* Fixed a bug in standalone subscription subscriber:  It was adding REQUESTED subscriptions to the active subscription registry.  (Only ACTIVE subscriptions should be added.)
 2019-02-01 10:14:46 -05:00
James Agnew 3af878201d
Merge pull request #1187 from bdenton/r4-json-like-tests 
Add JSON-like tests for DSTU3 and R4
 2019-01-31 16:47:26 -05:00
Ken Stevens 5ca352aeb8 Merge branch 'master' into windows-fixes-2 2019-01-31 09:52:09 -05:00
Ken Stevens 25f1afeabe Merge branch 'windows-fixes-2' of https://github.com/jamesagnew/hapi-fhir into windows-fixes-2 2019-01-31 09:50:41 -05:00
James Agnew ba225c6945
Merge pull request #1112 from bdenton/master 
Enhancements to tinder generic Mojo and Ant tasks
 2019-01-31 08:25:50 -05:00
jamesagnew b46b60798a Credit for #1130 2019-01-31 05:26:14 -05:00
R. Estevez (r624047) d0b33e45ae issue-1128: update versions in dependencies so that mvn clean package will be successful 2019-01-31 05:22:58 -05:00
jamesagnew db42609ca7 Credit for #1135 2019-01-31 05:20:43 -05:00
Steve Lewis c6a7c52c8c Update old removed Chef syntax in Vagrant provision 
The original reported issue was due to the deprecation and removal of
`Chef::Platform.set`. This was fixed by moving to the new provider
syntax.

Other changes in the Chef cookbooks were performed to address similar
changes due to deprecated and removed methods and models as well as to
conform to new enforcements.

One issue not addressed in this change is to make the Oracle JDK
download work, since Java 8u20 is no longer available.

This fix was tested with the following override in the Vagrantfile:

java: {
  install_flavor: 'openjdk',
  jdk_version: 7
}

The above change is NOT included in this patch set. Further work
would be necessary to update the Oracle download before `vagrant up`
will work without this modification.

Fix #1123

Signed-off-by: Steve Lewis <steven.lewis@cambiahealth.com>
 2019-01-31 05:17:22 -05:00
Ken Stevens 4b298fe40e Retrier now uses RetryTemplate 2019-01-30 22:34:26 -05:00
bdenton 737ee9e97c add JSON-like tests for DSTU3 and R4 2019-01-30 17:32:06 -08:00
Ken Stevens 6b601708dd Merge branch 'master' into windows-fixes-2 2019-01-30 18:01:17 -05:00
Ken Stevens adb037e805 copying over updates to helper classes 2019-01-30 17:56:47 -05:00
bdenton ca3b17f3b9 Merge remote-tracking branch 'upstream/master' 2019-01-30 12:09:25 -08:00
jamesagnew 5f29e4fbf3 Fix #1174 - Prevent serialization exception 2019-01-30 05:49:45 -05:00
jamesagnew 5d540d9208 Query optimization in JPA 2019-01-27 20:03:48 -05:00
Ken Stevens 16c44d264b reducing visibility of internal class 2019-01-27 12:50:09 -05:00
jamesagnew 503d1d8aff Subscription NPE fix 2019-01-26 18:42:01 -05:00
Ken Stevens 10c59fceeb
Subscription strategy tag (#1178) 
tests pass
 2019-01-25 13:01:04 -05:00
James Agnew f55be0b6d0 Test fix 2019-01-25 10:56:17 -05:00
Graham, Gary f2fa65c5ed Remove erroneous test 2019-01-24 17:20:29 -08:00
Graham, Gary 237a508d83 Allow specimen to be converted from STU3 -> STU2 2019-01-24 16:06:08 -08:00
James Agnew 38d03ea99a
Invalid ids in subscription queue (#1175) 
* Start work on this

* Work on interceptors

* Attempt fix

* Avoid environment dependency

* Test fixes

* One more test fix

* One more build tweak

* Lots of cleanup

* A bit more cleanup

* Still more cleanup

* Some test fixes

* Add legacy methods temporarily

* Don't auto-scan interceptor beans

* One more test fix

* rsolve merge conflicts

* Address review comments
 2019-01-23 21:17:47 -05:00
James Agnew e5723f209c
Merge pull request #1177 from jamesagnew/windows-fixes 
Windows fixes
 2019-01-23 19:16:10 -05:00
Ken Stevens 0eb70b81fe Oops. This was supposed to be automatically backed out. But SQUASH MERGE prevented that from happening. Hmmmmm...... 2019-01-23 18:13:29 -05:00
Ken Stevens cdd75bbe3a Merge branch 'master' into windows-fixes 
# Conflicts:
#	hapi-fhir-jpaserver-subscription/src/main/java/ca/uhn/fhir/jpa/subscription/module/subscriber/SubscriptionDeliveringRestHookSubscriber.java
 2019-01-23 17:16:08 -05:00
Ken Stevens 67eaeb8af1 Merge remote-tracking branch 'origin/windows-fixes' into windows-fixes 2019-01-23 17:14:51 -05:00
James Agnew e819b83a94 Make busywait more clear 2019-01-23 16:21:13 -05:00
Ken Stevens cfd67d88c7 Merge remote-tracking branch 'origin/windows-fixes' into windows-fixes 2019-01-23 16:17:48 -05:00
Ken Stevens 5c7907dfea magic number 2019-01-23 16:17:41 -05:00
James Agnew 7d1d5a102c Attempt to fix a weird lucene indexing issue 2019-01-23 16:14:53 -05:00
Ken Stevens 5a08593abd
_id support (#1176) 
* added support for _id in in-memory matcher
 2019-01-23 14:37:34 -05:00