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7503 Commits

Author SHA1 Message Date
ianmarshall 446dd5c782 Fixed package loading to enable loading of binary package files into the default partition when partitioning is enabled. 2021-01-05 17:51:04 -05:00
James Agnew d943260927
Rework valueset index for MySQL (#2269) 
* Rework valueset index for MySQL

* Add changelog
 2021-01-05 10:03:33 -05:00
IanMMarshall 14fc8f2598
Merge pull request #2262 from hapifhir/2260-fix-sorting-for-mysql 
Fix order by clause in search query for MySQL, MSSQL and MariaDB
 2021-01-04 21:19:04 -05:00
ianmarshall 1f0ea21cde Changes per code review plus test fixes. 2021-01-04 19:09:04 -05:00
ianmarshall bac47dbbf6 Changes per code review plus test fixes. 2021-01-04 19:06:39 -05:00
Nick f4cf4bf54a Survivorship 2021-01-04 17:09:31 -05:00
dependabot[bot] 86f254cd66
Bump datasource-proxy from 1.5.1 to 1.7 (#2267) 
* Bump datasource-proxy from 1.5.1 to 1.7

Bumps [datasource-proxy](https://github.com/ttddyy/datasource-proxy) from 1.5.1 to 1.7.
- [Release notes](https://github.com/ttddyy/datasource-proxy/releases)
- [Changelog](https://github.com/ttddyy/datasource-proxy/blob/1.x/CHANGELOG.md)
- [Commits](https://github.com/ttddyy/datasource-proxy/compare/datasource-proxy-1.5.1...datasource-proxy-1.7)

Signed-off-by: dependabot[bot] <support@github.com>

* Add changelog

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-01-04 10:32:52 -05:00
ianmarshall 8a2dfe86fd Merge remote-tracking branch 'origin/master' into 2260-fix-sorting-for-mysql 2021-01-04 09:00:21 -05:00
dependabot[bot] aa584d5b2d
Bump maven-dependency-plugin from 3.0.2 to 3.1.2 (#2266) 
Bumps [maven-dependency-plugin](https://github.com/apache/maven-dependency-plugin) from 3.0.2 to 3.1.2.
- [Release notes](https://github.com/apache/maven-dependency-plugin/releases)
- [Commits](https://github.com/apache/maven-dependency-plugin/compare/maven-dependency-plugin-3.0.2...maven-dependency-plugin-3.1.2)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-01-04 06:49:12 -05:00
dependabot[bot] 0ac9ea643a
Bump plexus_compiler_api_version from 2.8.5 to 2.8.8 (#2243) 
Bumps `plexus_compiler_api_version` from 2.8.5 to 2.8.8.

Updates `plexus-compiler-api` from 2.8.5 to 2.8.8
- [Release notes](https://github.com/codehaus-plexus/plexus-compiler/releases)
- [Commits](https://github.com/codehaus-plexus/plexus-compiler/compare/plexus-compiler-2.8.5...plexus-compiler-2.8.8)

Updates `plexus-compiler-javac` from 2.8.5 to 2.8.8

Updates `plexus-compiler-javac-errorprone` from 2.8.5 to 2.8.8

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-01-04 06:18:36 -05:00
jamesagnew 8df8ed7838 Bump hibernate version 2021-01-03 16:56:02 -05:00
James Agnew 3e6d80bdc2
Fix SQL Server paging with new querybuilder (#2265) 
* Fix SQL Server paging with new querybuilder

* Add changelog
 2021-01-02 11:13:51 -05:00
jamesagnew a255044774 Test fixes 2021-01-01 16:50:06 -05:00
jamesagnew 5a8fb5dd01 Drop redundant tests 2021-01-01 16:43:03 -05:00
jamesagnew cbb16ce3af License header updates 2021-01-01 16:40:46 -05:00
jamesagnew 57347ddb63 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2021-01-01 15:52:06 -05:00
jamesagnew d20b07c78e Update license headers 2021-01-01 15:50:24 -05:00
jamesagnew ec712e086c Version bump mockito 2021-01-01 15:50:00 -05:00
jamesagnew ed4d7d7eb6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2021-01-01 15:07:37 -05:00
jamesagnew f30999b053 License header updates 2021-01-01 15:07:23 -05:00
jamesagnew 4373b47207 Library version bumps 2021-01-01 15:06:55 -05:00
James Agnew 8f8c5c31f1
Add validation rules interceptor (#2264) 
* Start work on validation rules interceptor

* Work on interceptor

* Add tests

* Work on validation interceptor

* Work on interceptor

* Test fix

* Documentation tweaks
 2021-01-01 14:29:10 -05:00
ianmarshall eb59da3f03 Added changelog. 2020-12-24 15:23:50 -05:00
ianmarshall 63e0c90023 Change order by clause in search query to support MySQL, MSSQL and MariaDB. 2020-12-24 13:54:37 -05:00
Bill Denton 84d9854e24
OSGi manifest maintenance (#2217) 
* manifest cleanup and delete Fragment-Host

* make hapi-fhir-server-empi into an OSGi bundle
 2020-12-18 16:48:44 -05:00
James Agnew f228b4a167
Fix an error parsing extensions with a value type of UUID (#2258) 2020-12-18 10:57:31 -05:00
jamesagnew c745fb2561 Avoid deprecated method 2020-12-18 08:49:20 -05:00
jamesagnew 5dc12b8787 Add test for custom field parsing 2020-12-18 08:49:20 -05:00
Frank Tao 89cf6e6293
Fixed the pre-expansion with filter issue (#2257) 
* Fixed the pre-expansion with filter issue

* Changed minGramSize to 3 instead of 2
 2020-12-17 23:31:33 -05:00
Tadgh e79114e2ec
Un-revert the MDM changes, now that issues have been addressed (#2226) 
* Backward compatibility changes

* Revert "Revert "Remove all references to Person from EMPI.""

* Updated docs

* Removed mdm channel references

* Initial implementation

* fix coarseness bug. Fix tests. reinitialize silly bean

* Add forgotten json file

* Generic provider PoC

* Refactored provider to use BundleBuilder

* Removed version-specific MDM providers

* Addressed code review comments

* Fixed after merge

* Fixed docs

* MDM SVG for Update Use Cases

* Removed obsolete docs

Co-authored-by: Nick <nick.goupinets@smilecdr.com>
Co-authored-by: Nick Goupinets <73255752+nvg-smile@users.noreply.github.com>
 2020-12-17 10:12:53 -05:00
Frank Tao effbd19924
Merge pull request #2240 from hapifhir/ft_support_composite_sort 
Add support for composite sorting
 2020-12-16 16:54:56 -05:00
Frank Tao de845300c2 Updated based on the review comments 2020-12-16 15:48:10 -05:00
jamesagnew d99b67820a Add to changelog 2020-12-14 14:30:20 -05:00
dependabot[bot] a689beffc5
Bump spring_version from 5.2.3.RELEASE to 5.2.9.RELEASE (#2085) 
Bumps `spring_version` from 5.2.3.RELEASE to 5.2.9.RELEASE.

Updates `spring-beans` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-context` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-context-support` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-core` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-jdbc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-messaging` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-orm` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-test` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-tx` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-web` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-webmvc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Updates `spring-websocket` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases)
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-12-14 14:29:34 -05:00
jamesagnew f4ec19f03c Add changelog 2020-12-14 10:50:33 -05:00
dependabot[bot] 092da2e93f
Bump slf4j_version from 1.7.28 to 1.7.30 (#2242) 
Bumps `slf4j_version` from 1.7.28 to 1.7.30.

Updates `slf4j-android` from 1.7.28 to 1.7.30

Updates `slf4j-api` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases)
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30)

Updates `jcl-over-slf4j` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases)
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-12-14 10:49:19 -05:00
Kevin Dougan SmileCDR 9036df25fa
2229 - Remove support for the upload-igpack CLI command. (#2233) 
* 2229 - Remove support for the upload-igpack CLI command.

* 2229 - Revert changes made to the ValidateCommand class since it only takes an igpack as a parameter and therefore, should NOT have been removed.

* 2229 - Remove the igpack option from the Validate command.

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_3_0/2229-remove-upload-igpack-command.yaml

Co-authored-by: James Agnew <jamesagnew@gmail.com>

Co-authored-by: Kevin Dougan <kevindougan@kevins-mbp.lan>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
 2020-12-14 09:50:16 -05:00
jamesagnew ab64aa540f Fix #2248 - Wrong import for Validate 2020-12-14 09:19:30 -05:00
jamesagnew 0dc0e91766 Credit for #2241 2020-12-14 06:06:07 -05:00
Vladimir Nemergut 5d43f4c35e
Use system properties in ApacheRestfulClientFactory (#2241) 
* Use system properties in ApacheRestfulClientFactory

#2192

* Add changelog entry for #2192
 2020-12-14 06:01:17 -05:00
Frank Tao 0411967e26 Added composite sort test case for R5 2020-12-11 22:25:12 -05:00
Frank Tao dcbdc83d8e Supported composite sort 2020-12-11 21:50:32 -05:00
James Agnew 81f6fe9106
Support IBaseBundle as parameetr type for @Transaction method (#2237) 
* Support IBaseBundle as parameetr type for @Transaction method

* Add changelog

* Add bundle setter
 2020-12-11 18:33:00 -05:00
Ruslan Zinovyev 368e9a9b56
Rz 20201207 remove component scan (#2228) 
* deleted component scan

* added fixme

* fix abstract bean

* fixed

* final bean fixes

* added fixes

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-12-11 09:18:27 -05:00
James Agnew e4d6c51290
Allow plus symbol in email address match url (#2224) 
* Allow plus symbol in email address match url

* Add changelog
 2020-12-09 21:52:03 -05:00
Tadgh a63565bd15
Merge pull request #2223 from jamesagnew/revert-2177-gg_20201105-remove-person-references 
Revert "Remove all references to Person from EMPI."
 2020-12-09 15:15:26 -05:00
Tadgh 0938d72b51
Revert "Remove all references to Person from EMPI." 2020-12-09 14:57:00 -05:00
Nick Goupinets 9bf0afd19b
Merge pull request #2177 from jamesagnew/gg_20201105-remove-person-references 
Remove all references to Person from EMPI.
 2020-12-09 12:34:47 -05:00
Nick 52fd83c654 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-09 09:14:58 -05:00
jamesagnew 828573b467 Improve synchronization on HashMapResourceProvider 2020-12-09 05:53:47 -05:00