James
35a890db34
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-08-22 07:42:02 -04:00
James
b70165630a
Improve partial string handling in JPA server
2016-08-22 07:05:49 -04:00
James Agnew
7f15520db8
Don't include Location header in server responses for DSTU3 servers
2016-08-21 11:39:44 -07:00
James Agnew
da8abca1ff
Add custom extension example
2016-08-21 10:24:42 -07:00
James Agnew
379abb8e47
Don't strip urn: prefixes from references when encoding
2016-08-16 11:23:07 -07:00
James Agnew
eee168ced6
Add support for conditional operations to AuthorizationInterceptor
2016-08-15 13:35:50 -04:00
James
b0d19c3a65
Fix #423 - Encode custom types with custom type fields correctly
2016-08-14 13:05:16 -04:00
James Agnew
ac2d55139d
Add option to upload-terminology for security header
2016-08-09 15:38:30 -04:00
James Agnew
74950a4efc
Fix regression when parsing contained resources
2016-08-05 18:01:44 -04:00
jamesagnew
681f4e153d
Credit for #416
2016-08-02 20:18:59 -04:00
jamesagnew
545b359697
Fix #406 - Allow arbitrary authentication realm
2016-08-01 21:36:50 -04:00
James Agnew
dd8b1cd979
Use corrrect types from client
2016-07-27 18:15:09 -04:00
jamesagnew
41b58108f2
Bump version dependencies and return 200 for conditional delete with no matches
2016-07-25 08:46:02 -04:00
jamesagnew
ca97c0d000
Fix #401 - Don't clear fullUrl on stored bundles
2016-07-24 11:02:20 -04:00
jamesagnew
294e467811
Fix #409 - Tag#setCode did not work
2016-07-24 09:28:22 -04:00
jamesagnew
a9b29d5088
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-23 18:51:08 -04:00
jamesagnew
350e82b6cf
Fix #403 - Allow references to keep versions when encoding
2016-07-23 18:48:00 -04:00
James Agnew
748c13d0dc
Remove bad dependency
2016-07-22 18:33:16 -04:00
James Agnew
7bea8431f7
Add interceptor for rejecting TRACE and other invalid verbs
2016-07-19 19:16:09 -04:00
James Agnew
4177994ad8
Add credit for #404
2016-07-19 19:15:56 -04:00
James Agnew
8f7a374a25
Auto-detect disabled hibernate search
2016-07-18 16:56:41 -04:00
jamesagnew
5073692eda
Always include SUBSETTED tag when _elements is used on server
2016-07-18 07:05:11 -04:00
jamesagnew
196c11bfa2
Use new style mimetypes but keep supportuing the old ones as well
2016-07-17 18:35:06 -04:00
jamesagnew
ef1c81e241
Fix #150 - Don't encode null fluent client values
2016-07-14 07:18:48 -04:00
James Agnew
f6601cc347
Add example for terminology uiploading
2016-07-13 09:40:50 -04:00
James Agnew
1fae24e213
Update download page
2016-07-13 09:22:10 -04:00
James Agnew
c3e9f618eb
Version bump to 2.0-SNAPSHOT
2016-07-12 11:12:07 -04:00
jamesagnew
040c098742
Site updates
2016-07-07 07:40:53 -04:00
James Agnew
d63e289cbe
Validation fixes
2016-07-05 16:56:06 -04:00
jamesagnew
32bdd14639
Work on term service
2016-07-02 17:14:36 -04:00
James Agnew
38d30eef49
Respect order for order=REPLACE_PARENT
2016-06-29 10:26:36 -04:00
jamesagnew
9b6f548970
Work on term service, and allow child classes when serializing
2016-06-29 08:08:42 -04:00
jamesagnew
c28a2c40f0
Fix #394 - Don't use a method from Commons-Lang3 3.3
2016-06-27 06:19:22 -04:00
jamesagnew
c2dbcc7ff0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-26 23:12:26 -04:00
jamesagnew
fae4344c36
Add documentation around security interceptor
2016-06-25 11:27:55 -04:00
jamesagnew
556058a7b7
Tests passing
2016-06-25 10:55:31 -04:00
James Agnew
db0a208927
Work on terminology importing
2016-06-24 18:40:44 -04:00
James Agnew
89f3df80a4
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-20 10:53:43 -04:00
James Agnew
102548d22c
Fix decimaltype float constructor
2016-06-20 10:52:23 -04:00
jamesagnew
2e8c20dc83
More work on terminology services, and add support to operations to AuthorizationInterceptor
2016-06-20 07:19:08 -04:00
jamesagnew
b3d8d453de
Improve test coverage and clean up UnclassifiedServerFailureException processing
2016-06-18 10:37:43 -04:00
James Agnew
1166a2ee67
Work on support for _at parameter in history operation
2016-06-13 07:31:25 -05:00
James Agnew
23550240ad
Fix #378 - Include mandatory elements in server generated
...
OperationDefinition resources
2016-06-11 15:28:58 -05:00
James Agnew
8f1e45b3f3
Fix #379 - Server generated OperationDefinitions should generate
...
separate definitions for operations that are implemented against
multiple resource types
2016-06-11 14:46:13 -05:00
James Agnew
035ed27dab
Fix #380 - Correct cardinality for OperationDefinitions
2016-06-10 17:15:16 -05:00
James Agnew
189038ad08
Fix #267
2016-06-10 10:49:51 -05:00
James Agnew
6eca6e5efe
Update ResponseHighlighterInterceptor to emit raw content for
...
_format=xml and _format=json
2016-06-10 10:15:41 -05:00
James Agnew
4a7328231e
Fix #365 - Don't label methods as unable to return null when they can
2016-06-08 14:48:55 -07:00
James Agnew
0a2b4290ed
Fix #370 - Validation failure when validating certain STU3 resources
2016-06-08 14:21:18 -07:00
James Agnew
7e57aed5d6
Significant performance enhancements for context startup
2016-06-06 11:15:11 -07:00
James Agnew
99568a4b30
Clean up client fluent param types and add some test coverage
2016-06-05 11:33:43 -04:00
James Agnew
87eabe6bf8
More work on terminology server
2016-06-05 09:40:06 -04:00
James Agnew
d966190f9e
Fix #371 - STU3 server and client should use new sort parameter style
2016-06-04 12:34:44 -04:00
James Agnew
39a96f0258
Fix #374 - Include ETag and Last-Modified headers in response
2016-05-31 13:44:21 -04:00
James Agnew
f45ad117fe
Improve error messages for invalid validate request
2016-05-29 22:23:30 -04:00
James Agnew
a5debc07a3
DateTime parser incorrectly parsed times where more than 3 digits of
...
precision were provided on the seconds
after the decimal point
2016-05-25 19:20:51 -04:00
James Agnew
eabf0039ba
Merge branch 'term_svc'
2016-05-24 10:18:08 -04:00
James Agnew
e1513a6060
Allow transactions to be posted in web ui for DSTU3
2016-05-24 10:03:19 -04:00
jamesagnew
35ffbf1568
Sync DSTU2 validator with RI
2016-05-24 09:22:16 -04:00
jamesagnew
ee031667c5
Fix #369 - FhirTerser cloneInto method fails if target contains extension
2016-05-23 09:20:40 -04:00
jamesagnew
1b58aa33fa
Credit for #367
2016-05-22 14:56:27 -04:00
jamesagnew
61ce6021d6
Doc
2016-05-22 14:52:58 -04:00
jamesagnew
77a84195f5
Encode lanugage as a string instead of an array
2016-05-22 14:38:20 -04:00
jamesagnew
a65191baa2
Examples for #364
2016-05-22 09:01:24 -04:00
jamesagnew
8863ff25be
Add documentation for custom structures
2016-05-22 08:44:35 -04:00
jamesagnew
20b6994cc8
Fix #364 - Allow serializing custom types that contain custom datatypes
2016-05-21 14:35:10 -04:00
jamesagnew
021025ffa9
Fix #366 - Return HTTP 400 instead of 500 when boolean values contain invalid string
2016-05-21 13:07:46 -04:00
jamesagnew
3d8776f6ed
Fix #363 - Allow remote references in JPA resources
2016-05-21 12:58:04 -04:00
jamesagnew
b03bea3a58
Version bump a few dependencies
2016-05-21 09:37:58 -04:00
James Agnew
7942d69d5d
Accept conditional updates with _id as parameter
2016-05-16 19:11:25 -04:00
James Agnew
d5e2170595
Don't discard _count from parameters when method has @Count
2016-05-13 19:13:39 -04:00
James Agnew
563f4e4c46
Treat date eq params correctly
2016-05-13 18:49:41 -04:00
James Agnew
84a7856c19
Treat missing ID in resource body as warning
2016-05-13 18:04:07 -04:00
James Agnew
54d0fa0faa
Add a new option to CLI run-server called "--lowmem" which puts the
...
server into low memeory mode
2016-05-10 13:45:30 -04:00
James Agnew
bca8589177
Index DSTU3 timing datatypes
2016-05-09 16:32:31 -04:00
James Agnew
061243b5c7
Allow delete bundle to contain multiple deletes for the same resource
2016-05-08 13:11:55 -04:00
James Agnew
81cb769d18
Allow operation names to be escaped in URL
2016-05-07 19:28:36 -04:00
James Agnew
af2b702aa4
Fixes from Montreal connectathon
2016-05-07 14:24:33 -04:00
James Agnew
848ad158e2
Remove Remittance resource from DSTU2
2016-05-06 19:52:10 -04:00
James Agnew
4ae4b1a8d8
Support composite parametrs with quantity type in JPA
2016-05-06 18:43:07 -04:00
James Agnew
8c8434943c
Credit for #361
2016-05-06 17:55:16 -04:00
James Agnew
fd2671d28e
Fix validation issue
2016-05-06 17:44:23 -04:00
jamesagnew
689df98cf9
Credit for #359
2016-05-05 07:08:48 -04:00
jamesagnew
1c082f7f6e
Credit for #356
2016-05-05 07:03:58 -04:00
jamesagnew
387c4793f7
Credit for #355
2016-05-05 06:59:50 -04:00
jamesagnew
b4d3a7bb74
Don't highlight AJAX requests
2016-05-04 06:59:28 -04:00
jamesagnew
244cad6224
Allow validator exceptions to be ignored via confoguration
2016-05-03 21:58:09 -04:00
jamesagnew
cce0ce6b8e
Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8
2016-05-03 08:58:56 -04:00
jamesagnew
dcd32b6127
Correctly handle search parameter target types in JPA
2016-05-03 07:03:44 -04:00
James Agnew
3e8638a65f
Fix tests
2016-05-02 19:03:36 -04:00
James Agnew
804149205a
Work on getting tests passing
2016-05-02 11:42:55 -04:00
James Agnew
c90795ccef
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-02 09:03:48 -04:00
jamesagnew
9b55d0000b
Fix #354 - Bring back setFoo(List) and getFooFirstRep() methods to DSTU3 structures
2016-05-01 10:19:50 -04:00
jamesagnew
e3e81ff202
Fix #352 - Client should auto download resource if server ignores prefer header
2016-05-01 09:30:12 -04:00
jamesagnew
2bc1950bc1
JPA server transactions sometimes created an incorrect resource reference if a resource being saved contained references that had a display value but not an actual reference. Thanks to David Hay for reporting!
2016-04-29 09:21:12 -04:00
James Agnew
2d81612cd8
Fix #350 - Correct serialization for custom types which have fields
...
replacing other fields
2016-04-28 13:25:20 -04:00
jamesagnew
d45a9b67dc
Allow forced IDs to be reused between resource types
2016-04-24 19:24:55 -04:00
jamesagnew
514da88787
Improve performance in parser when parsing large bundles
2016-04-23 13:54:16 -04:00
jamesagnew
3eb805fb0a
Respect _format=application/xml+fhir
2016-04-23 12:17:27 -04:00
jamesagnew
941091dbf7
Deprecate fluent search without an explicit bundle type declaration
2016-04-23 10:15:13 -04:00
jamesagnew
d76e0008ac
Fix #342 - The HTTP 400 if request fail to parse
2016-04-22 07:19:57 -04:00
jamesagnew
dd3f1dd33c
Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content
2016-04-22 07:04:14 -04:00
jamesagnew
fcf0604e98
Site doc updates
2016-04-21 07:15:01 -04:00
James Agnew
a8b121d868
Try to fix tests
2016-04-20 09:03:43 -04:00
James Agnew
8bb00839d0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-20 07:28:17 -04:00
jamesagnew
8b59b61250
Release docs
2016-04-20 07:03:30 -04:00
James Agnew
2c665d1b39
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-19 21:58:37 -04:00
James Agnew
81fa46820a
Correctly support _summary=search option
2016-04-19 21:58:20 -04:00
jamesagnew
3a0de6e6f8
Fix #339 - Disable XXE XML parsing vulnerability
2016-04-19 07:55:24 -04:00
jamesagnew
43969cb8ce
Fix tests on CLI
2016-04-19 06:35:15 -04:00
jamesagnew
59c44a3b0b
More test fixes
2016-04-17 20:57:27 -04:00
jamesagnew
f3a41570d3
Try to get tests workign on Travis.. yet again
2016-04-17 19:25:11 -04:00
jamesagnew
846e216c04
Fix tests
2016-04-17 12:58:36 -04:00
jamesagnew
1af65ff5a8
Fix #335 (also fixes #336 ) - Correctly parse and serialize IDs on elements within a resource
2016-04-17 10:12:34 -04:00
jamesagnew
81dec23faf
Correctly populate Bundle.entry.fullUrl on Hl7OrgDstu2 servers
2016-04-14 06:59:43 -04:00
James Agnew
07d86c50d6
Work on cobertura
2016-04-13 08:09:51 -04:00
jamesagnew
2f37015d57
Clean up parsers so that elements are always encoded according to their order in the structures that contain them
2016-04-11 08:36:12 -04:00
jamesagnew
b81a343f5d
Add support for JPA searches with _tag:not=foo
2016-04-07 09:50:05 -04:00
jamesagnew
e30ebf69ba
Fix #325 - Fix equalsShallow and equalsDeep when a field is null on one side and empty on the other
2016-04-05 22:05:45 -04:00
James Agnew
39fc134482
Fix #326 - Correctly serialize DSTU3 references in JsonParser. Thanks to
...
@fw060 for the patch!
2016-04-05 16:33:29 -04:00
jamesagnew
079f966086
Parser enhancements when parsing bundles
2016-04-05 08:59:24 -04:00
jamesagnew
45390ebc89
Don't parse 1974-12-25+10:00 as this is not a valid FHIR time
2016-04-03 18:45:08 -04:00
James Agnew
1aebff9a43
Add RES_ID indexes to help performance searchin across large datasets
2016-03-27 08:59:39 -04:00
James Agnew
b2f11e0bfc
Fix #317 - Allow search params to be used when doing REST operations
2016-03-26 13:44:54 -04:00
James Agnew
20081a419d
Fix #320 - Don't generate binding enums for example binding fields on
...
resources
2016-03-25 20:15:01 +01:00
James Agnew
6ffb1c8c56
Fix #312 - Don't fail if extension list contains a null
2016-03-25 19:27:18 +01:00
James Agnew
f49130baf8
Add unit tests and documentation to the JAX-RS client implementation
2016-03-25 19:17:41 +01:00
James Agnew
f9fa6265df
Correctly handle JPA search by token with system but no code
2016-03-25 16:20:43 +01:00
James Agnew
de3cd6fdf6
Credit for #321
2016-03-25 11:42:40 +01:00
James Agnew
c6f06548fc
Fix #315 - Use custom types for searches and other client operations
...
when requested
2016-03-24 11:09:41 +01:00
James Agnew
1adfc4b4d9
Fix #315 - Allow declaring of custom types for specific profiles
2016-03-22 11:46:08 +01:00
James Agnew
82c6d82444
Sere up Binary resources as binary content even if the browser puts
...
application/xml in the Accept header
2016-03-18 18:38:44 +01:00
James Agnew
3922ff026e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-03-16 17:42:54 -04:00
jamesagnew
9aa7eea274
Add mode to parser to force it to not encode certain elements when serializing
2016-03-16 07:53:21 -04:00
jamesagnew
2ae2cbba23
Roll back site plugin to 3.4. What a nightmare.
2016-03-16 07:01:20 -04:00
James Agnew
9c8d9db7e6
Use separate index columns
2016-03-15 10:35:24 -04:00
James Agnew
00ced6a652
Improve performance of _lastUpdated queries in JPA server
2016-03-14 06:31:45 -04:00
James Agnew
6ddf91d9e2
Correctly handle extended operation in annotation based client where the
...
response is a raw resource and not a Parameters resource
2016-03-12 15:10:02 -05:00
James Agnew
452316aed7
Fix #313 - Do not treat OPTIONS [base]/foo as a request for server's
...
conformance statement. Thanks to Michael Lawley for reporting!
2016-03-12 14:53:20 -05:00
James Agnew
ce253bed70
Properly deserialize bound codes
2016-03-12 13:23:55 -05:00
jamesagnew
232afee955
Improved error messages for #305
2016-03-11 07:56:00 -05:00
jamesagnew
ed92f64e52
Fix #305 - Don't allow update resource body IDs to be missing or incorrect
2016-03-10 07:44:05 -05:00
jamesagnew
3897167518
Return correct bundle type on $everything operation
2016-03-09 23:11:40 -05:00
James Agnew
6f79f6c5e2
Keep the complete resource history in the history table, including the
...
current version
2016-03-09 15:34:49 -05:00
James Agnew
3bfcb57783
Page JPA search results to the database
2016-03-07 07:23:44 -05:00
jamesagnew
fb882f899e
Changelog tweak
2016-03-06 12:04:54 -05:00
jamesagnew
99a4b2c29e
Refactor JPA SearchBuilder
2016-03-05 20:46:04 -05:00
jamesagnew
eba3ca8e59
Improve documentation per Issue #309
2016-03-02 22:44:09 -05:00
jamesagnew
0ea8457a00
Fix VRead in web testing UI
2016-03-02 22:35:17 -05:00
jamesagnew
b147083f5a
Fix #308 - Remove unneded warning on parsing declared extension
2016-03-02 22:18:33 -05:00
jamesagnew
94f50686bc
Fix #304 - Better error message if wrong generic type is used
2016-03-02 07:06:17 -05:00
jamesagnew
3fd9f9518a
Handle unexpected extensions when parsing using IParserErrorHandler
2016-03-02 06:52:46 -05:00
jamesagnew
c44b23f493
Fix #280 - Don't leave web testing UI buttons disabled when you return to a page via the back button
2016-03-01 07:15:02 -05:00
jamesagnew
496d866f48
Fix #274 - Primitive elements with no value but an extension were sometimes not encoded correctly in XML, and sometimes not parsed correctly in JSON.
2016-02-28 22:15:43 -05:00
jamesagnew
a0260b9ea9
Note for #299
2016-02-28 19:40:48 -05:00
jamesagnew
c7d3f39457
Fix #296 - Handle :missing qualifier on QuantityParam
2016-02-28 18:32:43 -05:00
jamesagnew
c14a1330b4
Fix #302 - Don't crash server when adding profiles
2016-02-28 16:07:28 -05:00
jamesagnew
524b16b1e8
Fix header generation for clients
2016-02-28 15:44:10 -05:00
jamesagnew
1da5855c9c
Add Eclipse files to git
2016-02-28 14:02:29 -05:00
jamesagnew
f1e1ee9ff9
Merge JAX-RS client fixes
2016-02-28 13:34:57 -05:00
James Agnew
7fdbee6f21
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-26 18:20:32 -05:00
James Agnew
d383b402d1
Correct handling of Binary resources in client and server where the
...
binary contains embedded FHIR content
2016-02-25 14:31:26 -08:00
James Agnew
4a26064cd6
In the client, the create/update operations on a Binary resource (which
...
use the raw binary's content type as opposed to the FHIR content type)
were not including any request headers (Content-Type, User-Agent, etc.) Thanks to Peter Van Houte of Agfa Healthcare for reporting!
2016-02-25 12:54:52 -08:00
James Agnew
d11cbab15c
Don't add WWW-Authenticate header to response on AuthenticationException
2016-02-25 11:03:04 -08:00
James Agnew
1ba0ae3960
Support inline match URL references, per Simone's requast for the next
...
connectathon
2016-02-23 13:12:30 -08:00
jamesagnew
6ce4056f7a
Fix #298 - Don't handle /metadata for methods other than GET
2016-02-19 06:40:07 -05:00
jamesagnew
43bdfc0345
Fix #297 - Resource not populated in ActionRequestDetails for validate method
2016-02-19 06:21:05 -05:00
jamesagnew
4975d212fa
Add userdata map to interceptors which can be passed around
2016-02-17 08:05:55 -05:00
jamesagnew
c1141eb18f
Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes
2016-02-15 10:05:39 -05:00
jamesagnew
551ec3ab16
Add credit for #293
2016-02-08 22:04:30 -05:00
James Agnew
961cde41bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-08 14:22:20 -05:00
James Agnew
f21851099c
Version bump
2016-02-08 13:59:09 -05:00
jamesagnew
d93c54c0aa
Version bump to 1.5
2016-02-06 14:18:56 -05:00
jamesagnew
606dc7b643
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-04 22:29:54 -05:00
jamesagnew
9da031e2cc
Site updates for 1.4
2016-02-04 22:29:44 -05:00
James Agnew
68b816dce7
Prepare for 1.4 release
2016-02-03 16:56:32 -05:00
James Agnew
2e612eed4d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-03 14:09:13 -05:00
James Agnew
715ab0e269
Credit for #289
2016-02-03 14:08:52 -05:00
jamesagnew
9449df7df1
Prepare for 1.4 release
2016-02-03 08:35:05 -05:00
jamesagnew
32daeb6f58
Switch DSTU2.1 to DSTU3 per FMB's decision
2016-02-01 08:55:58 -05:00
James Agnew
914f615b8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-28 11:35:16 -05:00
jamesagnew
ecc48317f2
Version bump dependencies
2016-01-28 08:31:19 -05:00
jamesagnew
0f07cac496
Fix #286 - Resource chains not added to conformance statement
2016-01-28 07:31:37 -05:00
jamesagnew
1bc35f1ba3
Support modifiers on token parameters
2016-01-27 07:05:41 -05:00
James Agnew
7ed14d538a
Remove warning
2016-01-24 14:53:40 -05:00
jamesagnew
98dfceb90a
Link to Bill's new example
2016-01-21 21:52:01 -05:00
jamesagnew
133660a9ae
Credit for #288
2016-01-21 21:45:57 -05:00
jamesagnew
1ba03f4a9b
Fix #283 - Remove servlet 3.0 dependency where possible
2016-01-20 08:11:03 -05:00
James Agnew
d290110126
Fix validation
2016-01-15 18:02:20 -05:00
James Agnew
589059256f
Correct issues uncovered during connectathon
2016-01-11 07:42:13 -05:00
jamesagnew
b717c1f0c3
Update docs
2016-01-08 07:32:17 -05:00
jamesagnew
e7adebe8d7
Fix #278 - Add alternate configuration as suggested by Karl Davis. Thanks for the contribution!
2016-01-07 21:37:04 -05:00
James Agnew
0c8c414784
Try to get travis working
2016-01-07 11:17:54 -05:00
jamesagnew
b7aa4e15b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-05 08:31:24 -05:00
jamesagnew
59da230702
Improving validation documentation
2016-01-05 07:20:54 -05:00
James Agnew
7005cd52d9
Performance tweaks to the validator and get the DSTU2.1 endpoint working
...
with validation
2016-01-04 17:57:00 -05:00
jamesagnew
685bd9345b
Add request/response validator interceptors
2016-01-03 21:52:11 -05:00
jamesagnew
ccc71c3bd3
Tests should be passing now
2016-01-03 00:19:16 -05:00
jamesagnew
5789db8743
Remove dependency on cobertura at compile time
2016-01-02 10:55:52 -05:00
James Agnew
9e110506f7
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-16 12:04:54 -05:00
James Agnew
9c37c3b2a0
Use ResponseHighlighterInterceptor in the JPA example project
2015-12-16 12:03:58 -05:00
jamesagnew
a623003a56
Fix #240 - Support target resource type in server _include and _revinclude values
2015-12-14 21:50:35 -05:00
jamesagnew
d95bd269c0
Correctly encode value[x] field names when the datatype is a profiled type such as markdown
2015-12-14 21:04:27 -05:00
jamesagnew
97d6d09663
Work on #240 - Not yet working in JPA
2015-12-14 08:17:33 -05:00
James Agnew
bc9d1712d4
Credit for #265
2015-12-01 18:13:34 -05:00
James Agnew
4398040451
Add count(int) method to fluent client search
2015-12-01 10:22:50 -05:00
jamesagnew
fcdf80c6a7
Only do one pass of validation during a JPA transaction
2015-11-29 16:48:57 -05:00
jamesagnew
07078e4ce3
Add GZip support to client and server for client-to-server uploads
2015-11-29 15:03:28 -05:00
jamesagnew
d47e0e5e77
Add DSTU2.1 resources
2015-11-29 11:43:09 -05:00
jamesagnew
45502ba5ff
Credit for #251
2015-11-27 15:03:05 -05:00
jamesagnew
e6b47855e6
Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master
2015-11-27 14:59:53 -05:00
jamesagnew
e78fcf91c5
Credit for #259
2015-11-26 07:03:01 -05:00
petervanhoute
94f309114b
- add site-documentation for jaxrs base
...
- set example for operation on instance level
- remove not thrown exceptions
2015-11-25 15:34:41 +01:00
James Agnew
26e2e2527d
Site updates
2015-11-23 18:14:56 -05:00
James Agnew
c78be081ef
Add CLI test
2015-11-20 10:30:10 +01:00
James Agnew
c12dc82a37
Site updates for 1.3 release
2015-11-15 19:56:57 -05:00
James Agnew
8e24077bcf
Credit for #254
2015-11-15 12:46:42 -05:00
James Agnew
326db08f0e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-14 13:01:52 -05:00
James Agnew
f2ac8a4767
Define Enums for child concepts
2015-11-09 12:54:42 -05:00
jamesagnew
e7e820ee52
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-08 11:14:22 -05:00
jamesagnew
35a6b4dbf0
Fix #253 - Process JPA entries in the correct order
2015-11-08 09:36:04 -05:00
James Agnew
65c4250ed3
Update android distribution
2015-11-06 18:53:54 -05:00
jamesagnew
6fd5aecec7
Fix #250 - Honour Accept: text/xml and Accept: text/json
2015-11-05 07:32:33 -05:00
jamesagnew
23b35661ea
Bump a few dependency versions
2015-10-31 17:48:25 -04:00
jamesagnew
a6d4de1f3e
Add support in JPA for _content and _text for $everything operation
2015-10-31 17:09:32 -04:00
James Agnew
d3685e72ba
Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve
...
bundle type when retrieving pages
2015-10-29 15:38:19 -04:00
jamesagnew
01320ac1b1
Site updates
2015-10-29 09:14:23 -04:00
jamesagnew
30ab0203a3
Refactor search capability in JPA out of resource specific module
2015-10-28 08:44:52 -04:00
jamesagnew
65598c200e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-28 07:39:18 -04:00
James Agnew
43c1212840
Revamp the interceptor framework for JPA
2015-10-27 18:34:27 -04:00
jamesagnew
5a2ee77142
Parser (XML and JSON) shouldn't encode an ID tag in resources
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which are part of a bundle when the resource has a UUID/OID
ID.
2015-10-26 22:47:06 -04:00
jamesagnew
69658ab754
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-23 08:22:40 -04:00
jamesagnew
eea406e10e
ResourceReferenceDt#loadResource(IRestfulClient) did not
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use the client's read functionality, so it did not
handle JSON responses or use interceptors. Thanks to
JT for reporting!
2015-10-23 08:21:25 -04:00
James Agnew
fad59b75b9
Credit for #245
2015-10-21 12:03:36 -04:00
James Agnew
8d515feb6d
Fix #242 - Allow compartment and read method to coexist for server
2015-10-21 11:58:19 -04:00
James Agnew
d838a2bd4b
Reduce JPA uri param length from 256 to 255 to accomodate MySql
2015-10-21 10:37:56 -04:00
James Agnew
ae416dcd62
Improve nexted search/read handing in transactions in JPA server
2015-10-20 10:35:18 -04:00
jamesagnew
938a251ae9
Cleanup tests for java config in JPA
2015-10-19 20:19:40 -04:00
jamesagnew
9c0f6f993d
Finish converting Spring from XML to Java config
2015-10-17 09:39:27 -04:00
James Agnew
e9d18af5d9
Bump library versions
2015-10-14 18:11:52 -04:00
jamesagnew
6d93cbcaae
Get content search working correctly
2015-10-13 09:18:34 -04:00
jamesagnew
15b7da184e
Credit for #239
2015-10-12 20:08:11 -04:00
jamesagnew
0ab8ee386f
Add documentation for CLI
2015-10-12 18:47:49 -04:00
jamesagnew
b827823004
Improve efficiency of JPA queries with _lastUpdated
2015-10-12 09:32:25 -04:00
James Agnew
b62eb1168c
Allow server operations to work at the type level
2015-10-06 11:45:49 -04:00
James Agnew
0958ab6f16
Refactor $everything operations on JPA so that they perform better
2015-10-05 16:49:50 -05:00
James Agnew
80575b5380
Generic client now allows search by URL
2015-10-05 15:30:30 -04:00
James Agnew
43aad1eb98
Properly support chains in JPA conditional URLs
2015-10-04 15:38:58 -04:00
James Agnew
48d56b4722
Fix connectathon discovered issues
2015-10-03 23:52:30 -04:00
James Agnew
aa32e6f0a9
Improve ValueSet operations in JPA
2015-10-02 12:37:56 -04:00
James Agnew
12d95bf43c
Support patient and encounter $everything operations at the type level
...
in JPA
2015-10-02 08:09:17 -04:00
James Agnew
0a5e6043bd
Fix #234 - Invalid entry in OSGi manifest
2015-10-01 18:37:00 -04:00
James Agnew
119a4f36d9
Add error checking and better handling for match URLs in JPA server
2015-10-01 16:54:34 -04:00
James Agnew
541e6cdcb1
Credit for #235
2015-10-01 11:45:33 -04:00
jamesagnew
900c93949a
Work on subscriptions, and correct indexing of codes in JPA
2015-10-01 08:56:17 -04:00
James Agnew
9664174b6a
Use updated valueset definitions
2015-09-30 16:35:51 -04:00
jamesagnew
f9e4a3e1b5
Fix #233 - elementQuantity gets incorrectly encoded as elementDuration
2015-09-29 19:41:31 -04:00
James Agnew
ca8c257833
Support lastupdate filtering and sorting on JPA everything operation
2015-09-29 13:24:33 -04:00
James Agnew
1cc6a05273
FIx validation for resources using v2 tables
2015-09-29 10:51:36 -04:00
jamesagnew
9492744018
Work on subsciprions
2015-09-28 09:06:57 -04:00
James Agnew
51a046ea26
Handle sort by number, uti and token
2015-09-25 16:53:22 -04:00
James Agnew
1361e69177
Respect server default encoding if an Accept header is received which
...
indicates equal weight for both encodings
2015-09-24 17:52:52 -04:00
James Agnew
4ff7452c9b
Fix #227 - JPA server should reject resources with a reference that
...
points to an incorrectly typed
resource (e.g. points to Patient/123 but
resource 123 is actually an Observation) or points
to a resource that is not valid in the
location it is found in (e.g. points to Patient/123 but
the field supposed to reference an
Organization)
2015-09-24 14:47:04 -04:00
James Agnew
072c1ece87
Send Accept header on client requests, and allow string responses in
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QuestionnaireResponse validator for questions of type OPENCHOICE
2015-09-24 13:40:07 -04:00
jamesagnew
70eff0dc7f
Improve error message when $meta-add and $meta-delete are called with no meta element in the
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input parameters. Also improve OperationOutcome rendering in narrative generator.
2015-09-24 08:36:25 -04:00
jamesagnew
7e6844be56
Improve error message when JSON parser finds an object where an array is expected
2015-09-24 07:27:43 -04:00
jamesagnew
a15ed8e944
Work on subscriptions, and correct an issue with DateRangeParam where comparators get ignored
2015-09-23 08:36:11 -04:00
jamesagnew
f2118df9b8
FIx #225 - Support and/or in JPA on _id and _language params
2015-09-21 21:29:04 -04:00
jamesagnew
04c2cce13f
Start working on JPA subscriptions
2015-09-21 09:08:19 -04:00
jamesagnew
8fee057de3
Bump Spring and Hibernate versions
2015-09-20 10:18:33 -04:00
jamesagnew
d59c0ff404
Correctly index reference paths with multiple paths, and don't store duplicate indexes in JPA
2015-09-20 08:23:03 -04:00
jamesagnew
1dd7f4d22a
Site updates
2015-09-18 08:50:31 -04:00
jamesagnew
b1df85eb37
Validation now working completely in JPA server
2015-09-15 08:27:49 -04:00
jamesagnew
9b69f3a3f8
Credit for #223
2015-09-14 21:28:24 -04:00
jamesagnew
d0bac3d419
Work on CLI tool
2015-09-13 22:06:31 -04:00
jamesagnew
780fc871cb
It should not be possible to search for deleted resources using the _tag, _id, _profile, or _security search parameters
2015-09-13 09:42:41 -04:00
jamesagnew
48ee2cbee8
JPA server now correctly suppresses contents of deleted resources
...
in history
2015-09-12 09:45:12 -04:00
jamesagnew
437625505c
Add some tests and some cleanup of unused code
2015-09-09 22:41:10 -04:00
jamesagnew
bb5816d8e9
Fix second part of #216 - Correctly encode choice elements on profiled datatypes
2015-09-08 08:01:51 -04:00
jamesagnew
9af3fcf02d
Allow browser requetsts to force a raw response
2015-09-07 21:52:35 -04:00
jamesagnew
7217458681
Allow storage of Conformance resources in JPA
2015-09-07 21:31:10 -04:00
jamesagnew
08633066c6
Fix #216 - Unexpected attributes when parsing composite elements should be logged
2015-09-07 10:08:11 -04:00
James Agnew
abdfb50b40
Fix a few tests and don't crash on old Woodstox
2015-09-04 13:59:57 -04:00
jamesagnew
773608f860
Validation documentation
2015-09-04 08:22:06 -04:00
jamesagnew
f3e44eea3b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-03 08:08:13 -04:00
jamesagnew
8b20f3a77d
Sync to 1.0.0 FHIR definitions
2015-09-03 08:07:43 -04:00
James Agnew
ae177b52e8
Populate Bundle.entry.fullUrl
2015-09-02 13:42:59 -04:00
James Agnew
fa76071bd3
Return last updated time and version ID for instance $meta operation
2015-09-02 11:26:40 -04:00
jamesagnew
875ad3b5f9
Correct tag handling for DSTU2
2015-09-02 07:46:52 -04:00
James Agnew
97e6073665
Support URI (and prepare for lat/lon search params) in JPA server, and
...
don't store duplicate tags
2015-09-01 17:02:35 -04:00
jamesagnew
e8f5451cc9
Fix a few issues found by FindBugs
2015-09-01 07:05:27 -04:00
jamesagnew
a9f978a8a2
Udate to latest DSTU2 definitions
2015-08-31 08:20:24 -04:00
James Agnew
bd13b53099
Fix #212 - Dont accept invalid IDs but do accept IDs starting with a
...
number
2015-08-28 15:36:56 -04:00
jamesagnew
073fa47807
Add support for _include:recurse behaviour
2015-08-27 19:44:51 -04:00
jamesagnew
5e0a8c476b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-08-25 07:49:30 -04:00
jamesagnew
d5f76f105d
Credit for #211
2015-08-25 07:49:14 -04:00
James Agnew
d6540a9759
Merge pull request #211 from pukkaone/tester-client-factory
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FHIR Tester application use configured client factory
2015-08-25 07:46:17 -04:00
James Agnew
83a57f8e7c
Auto qualify resource IDs
2015-08-24 18:21:34 -04:00
Chin Huang
21564528a0
Fix FHIR Tester documentation formatting
2015-08-24 15:01:47 -07:00
James Agnew
df4d371edc
Add profile and security params for generic search
2015-08-24 15:23:28 -04:00
jamesagnew
60339d6f93
Fix #209 - _revinclude results from JPA server should have a Bundle.entry.search.mode of "include" and not "match". Thanks to Josh Mandel for reporting!
2015-08-23 22:25:25 -04:00
jamesagnew
11376024fa
Fixing test related to summary and elements mode
2015-08-23 21:51:46 -04:00
James Agnew
ddc66d3ed0
Add support for $validate-code in JPA server
2015-08-20 14:27:19 -04:00
jamesagnew
6941f92090
Fix #207 - Confusing error message parsing invalid contained resources
2015-08-17 20:46:56 -04:00
jamesagnew
ac564a54d6
Documentation cleanup
2015-08-17 07:57:20 -04:00
jamesagnew
330dbde983
Add new interceptor hook for auditing
2015-08-16 22:09:01 -04:00
James Agnew
2766af2693
Update definitions and correctly handle exceptions in
...
incomingRequestPreProcessed method in server interceptors
2015-08-13 16:59:10 -04:00
James Agnew
b36e4e5841
Merge branch 'master' into dstu2_final
2015-08-06 18:07:34 -04:00
James Agnew
43dd081098
Fix compile issues and keep working on android build
2015-08-06 13:13:03 -04:00
James Agnew
af9c8faf89
Don't crash if resrouce references being parsed have unexpected child
...
elements
2015-08-06 10:50:36 -04:00
James Agnew
63defc2f30
Merge branch 'master' into dstu2_final
2015-08-05 13:29:20 -04:00
James Agnew
fd91ce76ce
Fix #192 - Correctly unescape search parameters in the server when they
...
have a trailing comma or an escaped backslash
2015-08-05 12:57:04 -04:00
James Agnew
5b09a3d2b6
Add trasnaction BATCH support to JPA
2015-07-31 09:29:25 -04:00
James Agnew
ab2129d651
Implements support for _tag in JPA server and client
2015-07-30 07:47:37 -04:00
James Agnew
27a1d68d5f
Documentation updates
2015-07-28 14:47:58 -04:00
James Agnew
85f686cde2
Credit for #200
2015-07-28 12:23:11 -04:00
James Agnew
75798cf9fe
Use HttpServletRequest.getContextPath to get the context path
2015-07-27 11:19:29 -04:00
James Agnew
56a4c1b04b
Add serialization support and fix build regression
2015-07-21 09:45:53 -04:00
jamesagnew
48917684fd
Finish off #152
2015-07-21 08:28:40 -04:00
jamesagnew
9476a785ba
Docs
2015-07-19 22:25:45 -04:00
jamesagnew
a774a654ce
Property document OperationDefinitions generated automatically by server
2015-07-19 11:10:46 -04:00
jamesagnew
a35d20b999
Fix #158 - Don't encode empty tags
2015-07-18 17:35:54 -04:00
jamesagnew
3bff020c54
Add exception pre processing method to server interceptors
2015-07-18 16:31:32 -04:00
jamesagnew
626f4677e7
Fix #198 - Sorting should only sort on the individual parameter searched on, not all params of the same type
2015-07-18 15:29:24 -04:00
jamesagnew
41283d4ed4
Add $get-resource-counts operation to JPA server
2015-07-17 18:28:47 -04:00
jamesagnew
ddbe79cb86
For #126 - Don't use BoundCodeableConcept for empty enums
2015-07-17 08:34:44 -04:00
jamesagnew
2fc0d4c7a2
Clean up exception handling in server, and add QuestionnaireAnswers validation for JPA server
2015-07-16 20:16:51 -04:00
jamesagnew
818c40498c
Site updates
2015-07-15 08:37:56 -04:00
jamesagnew
2b69817ad9
Site updates
2015-07-14 08:54:28 -04:00
jamesagnew
c8ce723a1d
DOcumentation updates
2015-07-13 08:16:48 -04:00
James Agnew
350028be73
Implement meta operations in client
2015-07-10 17:36:55 -04:00
James Agnew
d20b7e2c94
A few cleanups to allow example resources to commit cleanly
2015-07-07 17:27:10 -04:00
James Agnew
0f76ba81e1
Fix #196 - Support deep chained parameters in JPA. Also add support for
...
Prefer header.
2015-07-07 10:41:07 -04:00
jamesagnew
8b65a9aedf
Indicate support for conditional create/update/delete in DSTU2 server conformance statement
2015-06-25 22:22:19 -04:00
James Agnew
af33664e7c
Support _count on JPA search in transaction
2015-06-25 10:32:03 -04:00
James Agnew
75f5b47762
Doc cleanup
2015-06-24 17:42:46 -04:00
James Agnew
dd9f80ecb1
Clean up warnings
2015-06-24 12:26:40 -04:00
jamesagnew
fed9f4d61e
Add unit tests and update healthconnex server
2015-06-23 08:29:13 -04:00
James Agnew
70d4abdf06
Server should include lastUpdated in search responses if one is supplied
...
by the implementation. Also automatically include in this in JPA server
2015-06-22 16:27:08 -04:00
James Agnew
ccc49e975f
Fix #188 - Support reference parameter for sorting in JPA server
2015-06-22 14:41:43 -04:00
jamesagnew
a4157c1339
Add sort on reference param for JPA server
2015-06-22 08:34:47 -04:00
jamesagnew
685fa6d164
Code and site cleanup
2015-06-21 22:10:13 -04:00
James Agnew
e8c75c5a45
Add support for _lastUpdated parameter in client and JPA server
2015-06-19 17:46:14 -04:00
James Agnew
886fa76ef2
Support ifNoneMatch in transaction request
2015-06-19 16:08:35 -04:00
James Agnew
84571f993c
Support Questionnaire.answers indexing in JPA server
2015-06-18 18:51:11 -04:00
James Agnew
269106074d
DSTU2 server should indicate conformance for transaction operation
2015-06-18 17:49:33 -04:00
James Agnew
a27acb9b79
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-17 14:32:42 -04:00
James Agnew
39dd48bc41
Automatically populate Bundle.entry.base when encoding a bunde
2015-06-17 14:32:11 -04:00
jamesagnew
1bde9ac5b3
Fully implement content type negotiation, and add checkstyle
2015-06-17 13:51:05 -04:00
jamesagnew
81bfc28147
Support $validate operatioh in DSTU2 client
2015-06-16 08:05:27 -04:00