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247 Commits

Author SHA1 Message Date
jamesagnew edc30568f2 Address review changes 2020-04-07 19:07:07 -04:00
jamesagnew 47786660d5 Test fixes 2020-04-07 13:58:24 -04:00
jamesagnew 347ecc7d51 Tests passing 2020-04-07 09:39:14 -04:00
jamesagnew 826ba6458a Subscription work 2020-04-06 20:15:41 -04:00
jamesagnew b78205c218 Ongoing cleanup 2020-04-06 17:00:45 -04:00
jamesagnew 40d0c27ae3 Work on subscription cleanup 2020-04-05 18:43:27 -04:00
jamesagnew d0884663d2 Work on subscription cleanup 2020-04-05 11:34:47 -04:00
jamesagnew 0a28c0c060 Work on subscription cleanup 2020-04-05 07:21:05 -04:00
jamesagnew 79da1578cb Subscription cleanup 2020-04-04 20:04:32 -04:00
jamesagnew fef447afee Work on subscription cleanup 2020-04-04 16:07:01 -04:00
jamesagnew 68db40d057 Queue factory cleanup 2020-04-03 08:07:39 -04:00
jamesagnew 7c6024fa14 More work on subscriptions 2020-04-03 07:43:21 -04:00
jamesagnew 43b4d8e0e3 Work on subscriptions 2020-04-02 21:15:07 -04:00
jamesagnew 6baf1995c9 Work on subscription cleanup 2020-04-02 20:30:19 -04:00
jamesagnew e1142f4043 Start work on subscription cleanup 2020-04-02 05:31:12 -04:00
jamesagnew 3f20f7b67f Make SubscriptionDeliveryHandlerFactory not abstract 2020-03-22 21:01:19 -04:00
James Agnew 22413911bf
Validation api changes (#1719) 
* Validation enhancements

* Work on validation api reworking

* Keep working on validation API

* Keep working on new term API

* Work on validation api

* Ongoing work on validation

* Work on integrating validation

* Work on validation API

* Add to validation API

* Work on validation

* Work on API

* Work on validation

* Work on validation API

* Work on validation API

* Work on validation api

* Work on validation API

* Work on validation api

* Validation API changes

* Work on API

* More work on validationo API

* Work on validation API

* FIxes

* WOrk on validation api

* Work on validation API

* Tests passing!

* More cleanup

* More validation API changes

* Fix intermittent test failure

* Package reorg

* Validation API work

* Work on doocumentation

* Work on API

* More work on new validation API

* Fix errorprone-reported error

* Test fixes

* Documentation updates

* Documentation tweaks

* Work on API

* Bean name adjustments

* Build fixes

* Some test fixes
 2020-03-17 13:28:59 -04:00
Ken Stevens ecf5284c87 moved common Json annotations out into an interface 2020-03-12 13:36:34 -04:00
Ken Stevens b2f9dd4578
extend pointcutlatch and simplify FhirClientResourceRetriever (#1737) 
* extend pointcutlatch and simplify FhirClientResourceRetriever

* extend pointcutlatch and simplify FhirClientResourceRetriever
 2020-02-28 16:38:13 -05:00
Ken Stevens b33ad73d46 switch subscriptionchannelfactory to autowire 2020-02-24 14:28:14 -05:00
Ken Stevens 41b5eb2484 Switching cdrsubscribablefactory from @ComponentScan to @Bean 2020-02-23 15:43:30 -05:00
jamesagnew ddc7b601ee Version bump to 4.3.0-SNAPSHOT 2020-02-16 19:23:22 -05:00
jamesagnew 4fd80cfca7 Bump to 4.2.0 2020-02-16 19:00:15 -05:00
Ken Stevens 2bc3181218 ensure in-memory matching location search for Dstu3 falls back to a db search 2020-01-25 13:30:26 -05:00
Ken Stevens 4f14e621ec added failing test for in-memory dstu3 case 2020-01-24 22:03:23 -05:00
jamesagnew 9c7f5e1b9b License header updates 2020-01-12 10:15:08 -05:00
James Agnew 5cfc75eac2 Test fixes 2019-12-25 13:05:33 -05:00
Ken Stevens 625f967688 ready for review 2019-12-20 14:56:44 -05:00
Ken Stevens 993d8220d1 review feedback 2019-12-02 11:18:52 -05:00
Ken Stevens f92c2bb5f9 ensure only one @PostConstruct method to make order explicit 2019-11-29 11:46:03 -05:00
Ken Stevens 37eef4e3e4 rename schedule interface methods 2019-11-29 11:04:35 -05:00
Ken Stevens 321790f6bf standardized job names and how they're scheduled 2019-11-29 10:12:13 -05:00
Ken Stevens a0e363171d replace FireAtInterval class with an interface for now 2019-11-29 09:21:20 -05:00
Ken Stevens 6f9cd56c81 moved scheduler up to hapi-server 2019-11-20 14:30:24 -05:00
Ken Stevens 8fca468e1f remove boolean from scheduling API 2019-11-19 10:13:22 -05:00
James Agnew 74159dcb26
Work on refactoring how PIDs work (#1580) 
* Start work on refactoring how PIDs work

* Some test fixes

* Test fixes

* Test fixes

* Restore accidentally deleted line

* One more tweak

* Rework resource link extraction

* Test fix

* Split out transaction processor

* Updates

* Test fix

* Test fixes

* Test fixes

* Clean up LGTM warning

* Fix compile failure

* One more test fix

* Fix LGTM issue

* Add spot for metadata

* Add test logging

* Remove testing code

* More test logging

* Add some test logging

* Attempty to fix intermittent test failure

* Improve exception tracking

* Work on simplifying search param registry

* Fix compile

* Fix compile errors

* Fix two test bugs
 2019-11-17 14:35:19 -05:00
James Agnew 497a96ae68 Version bump for next round of development 2019-11-12 22:09:21 -05:00
jamesagnew f99ad981b5 Version bump to 4.1.0 2019-11-12 16:08:20 -05:00
Ken Stevens 7525e70bbc added message type to channel api. needed by kafka listeners when more than one message type needs to be supported 2019-11-09 18:31:08 -05:00
James Agnew b90f285218 Merge branch 'master' into ja_20190928_rationalize_search_param_extractor 2019-10-30 08:41:14 -04:00
James Agnew 007cfaf00e
Don't error out on missing CS (#1570) 
* Don't error out on mi9ssing CS

* Add tests

* Add a bit of test coverage

* One more test
 2019-10-30 08:38:39 -04:00
jamesagnew 51a0006548 Work on rationalizing search param extractor 2019-10-27 20:04:33 -04:00
James Agnew 817f9ae36e Merge branch 'master' into ja_20190928_rationalize_search_param_extractor 2019-10-27 17:25:20 -04:00
James Agnew 464c6c5b45
Upgrade dependencies and addess Semmle issues (#1554) 
* Version bumps

* FIx build issues

* Address a few Semmle issues

* Work on tests

* Some test fixes

* Test fix

* Fix deletions

* Test fix

* Fix intermittent test failure

* One more dependency bump

* Add some test logging

* Remove bad import

* Add some tests

* Test updates
 2019-10-22 17:10:58 -04:00
James Agnew 73961072a6
Handle invalid chains on custom search params (#1553) 
* Handle invalid chains on custom search params

* Add some more tests

* One more test fix
 2019-10-21 21:21:33 -04:00
Ken Stevens 9a580de6c4 fix subscription logging for delete 2019-10-06 15:10:19 -04:00
jamesagnew 150c865f68 License header updates 2019-10-03 21:20:08 -04:00
Ken Stevens 38ad11be64
Merge pull request #1513 from jamesagnew/ks-subscription-delivery-queue-configurable-name 
subscription delivery queue configurable name
 2019-10-03 15:19:12 -04:00
James Agnew a3b9db1363 Clean up a few unused methods and move test classes into test project 2019-10-03 14:58:02 -04:00
Ken Stevens 6451b9691e review feedback 2019-10-03 13:53:54 -04:00
Ken Stevens 66618ec6bd review feedback 2019-10-03 13:52:54 -04:00
Ken Stevens 5b05e9cda0 review feedback 2019-10-03 13:49:13 -04:00
Ken Stevens 53f949c2d0 pre-review cleanup 2019-10-02 08:36:54 -04:00
Ken Stevens ba37ce0588 test cleanup 2019-10-02 07:31:16 -04:00
Ken Stevens 82543c01d6 fix test 2019-10-02 06:55:27 -04:00
Ken Stevens 5aa4f88da3 Remove ISubscribableChannel interface. We don't need it after all. 2019-10-02 06:35:39 -04:00
Ken Stevens 4c534a8d7e await cleanup 2019-10-01 22:10:07 -04:00
Ken Stevens 028febfe45 await cleanup 2019-10-01 21:16:06 -04:00
Ken Stevens f0b2bb8309 fixed triggering subscriptions 2019-10-01 14:57:25 -04:00
Ken Stevens 718b2c793d fixed asymmetry between add and remove 2019-10-01 11:22:09 -04:00
Ken Stevens ca95791d2e fix test 2019-10-01 10:52:00 -04:00
Ken Stevens 082dff71c2 added tests 2019-09-30 21:07:37 -04:00
Ken Stevens b757d95d64 added tests 2019-09-30 21:04:29 -04:00
Ken Stevens 4c8e330669 change channel cache to us id instead of object 2019-09-30 17:50:12 -04:00
Ken Stevens 6867a57625 null check 2019-09-30 17:15:35 -04:00
Ken Stevens 6196f528d9 fix synchronization channel removal 2019-09-30 16:48:48 -04:00
Ken Stevens 99fee443fd test 2019-09-30 15:19:01 -04:00
Ken Stevens fd8b5206e7 Separated ChannelRegistry from ActiveSubscriptionRegistry so we can support a many-to-one relationship there 
All tests pass
 2019-09-30 15:01:47 -04:00
Ken Stevens 392d7ab000 Extend SubscribableChannel with SubscribableChannelManagement so we can get a handler count so we know when to destroy a channel 2019-09-26 15:46:40 -04:00
Ken Stevens a3a7174c63 Merge remote-tracking branch 'remotes/origin/master' into ks-subscription-delivery-queue-configurable-name 2019-09-26 09:17:53 -04:00
James Agnew 8657afb01e
Fix intermittent test failures regarding search (#1509) 
* Add some logging

* Add more test logging

* Work on some test logging

* Fix compile error

* Work on codecov

* Work on codecov

* Remove test debug messages
 2019-09-25 20:15:21 -04:00
Ken Stevens 2c21d72c03 added queue naming service 2019-09-25 16:45:50 -04:00
jamesagnew 473fa3456e Work on adding codecov 2019-09-25 14:12:42 -04:00
James Agnew 4a751cbfc5
Integrate Bulk Export (#1487) 
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
 2019-09-17 16:01:35 -04:00
Ken Stevens 42a9672cc2 fix test 2019-09-09 17:36:57 -04:00
Ken Stevens fa62ab9c9e Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache 
# Conflicts:
#	hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
#	src/changes/changes.xml
 2019-09-04 13:31:00 -04:00
Ken Stevens 9ea937d007 extra logging around send to subscription delivery channel 2019-09-01 18:43:32 -04:00
jamesagnew ab5333f370 Fix subscription config file 2019-08-17 16:15:55 -04:00
James Agnew 1e07fcd2b3
Fix an unintended regression in #1357 (#1429) 
* Start working on a tweak to #1357 - Not yet complete

* Tweaks to avoid an unintended regression from #1357
 2019-08-15 08:35:50 -04:00
Sean McIlvenna 6ecaa4fc18 Addressing james' request to change isXml to theXml 2019-08-14 14:35:18 -04:00
Sean McIlvenna b37c4b5ae7 Fixing broken unit tests 2019-08-14 14:35:18 -04:00
Sean McIlvenna d92be90789 Changes to subscriptions to include the resource that triggered the subscription in the payload, serialized as JSON or XML depending on the Subscription.channel.payload property's value 2019-08-14 14:35:18 -04:00
jamesagnew e1b43d811f Version bump to 4.1.0-SNAPSHOT 2019-08-14 14:06:06 -04:00
jamesagnew 3f22456b0f Bump version to 4.0.0 2019-08-14 11:06:26 -04:00
jamesagnew 2999a292e6 Get subscriptions working for R5 2019-08-11 18:32:47 -04:00
James Agnew 7d62064dc0 Don't require a daoregistry 2019-08-11 08:25:41 -04:00
James Agnew 4f5a2b3c0c Add fhirType() to IBase to bring it in line with what the core structures do 2019-08-09 09:44:20 -04:00
James Agnew 8d2b0ea1c3 Test fix 2019-08-08 15:50:28 -04:00
James Agnew 2518d4e0be Add some tests 2019-08-08 15:23:55 -04:00
James Agnew 55c0d5b604
Add binary storage for Attachments (#1386) 
* Have this working now

* Add utility method

* Build fixes

* Add changelog
 2019-07-17 18:31:17 -04:00
James Agnew 120b93f204
Use HL7 FHIR Core Structures (#1382) 
* Ongoing work on core structures suport

* Ongoing work on this merge

* Ongoing work to clean up structures

* Credit for #1179

* Address compile issues

* Latest changes

* Work on parallel execution

* Work on getting tests passing

* Add H2 to migrator

* Test fix
 2019-07-14 10:16:40 -04:00
jamesagnew dff2fdd3cf GET RID OF TRAILING LICENSE HEADER SPACES ONCE AND FOR ALL 
YESSSSSSSSSSSSS
 2019-07-05 11:19:51 -04:00
Ken Stevens 2b1ed16f68 Apply the same fix we used for Dstu3 2019-07-04 13:58:20 -04:00
James Agnew 1fd99dac63
Enable optional cascading deletes on JPA server (#1363) 
* Start working on cascading deleets

* WOrk on cascading deletes

* Work on cascading deletes

* Enable cascading deletes

* Cascade deletes almost working

* FIx test

* Test fix
 2019-06-28 17:32:39 -04:00
James Agnew 2bfbea4e6b Remove duplicate test class 2019-06-26 09:24:36 -04:00
James Agnew 4ad1808da3
Propagate RequestDetails to everything in JPA server (#1358) 2019-06-22 15:18:06 -05:00
jamesagnew 087c53286c License header updates 2019-06-14 18:43:55 -04:00
Stig Rohde Døssing b56f59542a Move JettyUtil to new module 2019-06-14 18:34:45 -04:00
Stig Rohde Døssing aab7bb6b64 Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities. 2019-06-14 18:34:45 -04:00
Ken Stevens 2bf680509b
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching (#1341) 
* Make IBundle list interface more flexible

* Make matchResourceLinks visible

* Make matchResourceLinks visible

* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module

* Added more accessors to version independent resource classes

* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)

* add AnyComposition

* cleanup of Any classes

* create searchparam config so people can use that module without using subscriptions

* create searchparam config so people can use that module without using subscriptions

* fix broken test

* added derivedFrom

* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types

* TokenParam.equals

* add error check to searchable hashmap resource provider

* added support for R4

* add successor to measure

* delete conflict hook
start with failing test

* test passes.
hook is called.

* added delete conflict hook
all delete conflict tests pass

* added javadoc

* Performance test

* test bad interceptor case

* typo

* rename criteria matcher

* added support for multiple topics

* fix method name

* add effective period

* Temporarily excluding StressTest from build to try to get Travis under time limit

* change log

* review feedback

* review feedback

* review feedback
 2019-06-13 13:59:51 -04:00