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7692 Commits

Author SHA1 Message Date
ianmarshall 7413584bff Make LOINC Top2000* files optional in terminology loader. 2021-02-10 22:35:15 -05:00
ianmarshall a383cb94fc Make LOINC Top2000* files optional in terminology loader. 2021-02-10 22:30:19 -05:00
Kevin Dougan SmileCDR 772bc9c0ea
Removed the com.vladsch.flexmark dependency from the hapi-fhir-jpaserver-cql project. (#2375) 2021-02-10 10:37:16 -05:00
Tadgh 2759db2a31
Merge pull request #2371 from hapifhir/config-error-on-url-protocol 
Throw ConfigurationError if you attempt to provide a Rest URL that contains a protocol.
 2021-02-09 20:25:14 -05:00
Tadgh 64878c23d3 Update text, add changelog 2021-02-09 19:03:09 -05:00
Tadgh 2e3712357f Throw configueration error when somebody tries to put a protocol in the rest URL 2021-02-09 18:59:11 -05:00
James Agnew dd7a156d19
Call startOperation for paging requests (#2370) 2021-02-09 15:47:11 -05:00
Ken Stevens 7f127f75f9
validate that Terminology beans are proxied so that @Transactional annotated methods are run within transactions (#2362) 2021-02-08 13:11:29 -05:00
Jari Maijenburg 0ec64cfab1
Fixed bug where AND resource search-params were matched as OR params (#2365) 
* Fixed bug where AND resource search-params were matched as OR params

* Added InMemoryResourceMatcher test to test searching in a period
 2021-02-08 10:23:07 -05:00
jamesagnew 028ef1b088 Credit for #2365 2021-02-08 09:15:04 -05:00
jamesagnew da847ad08a Credit for #2282 2021-02-07 12:32:41 -05:00
Hanan Awwad 6384067e50
Customize concept display in value set expansion (#2282) 
* fix issue #2280

* revert the indentation back.

* revert-back untouched changes.
 2021-02-07 12:29:05 -05:00
James Agnew c69d741b43
Add CapbilityStatement customizing hook (#2364) 
* Add CapbilityStatement customizing hook

* Add additional method

* Interceptor service tweak
 2021-02-07 09:12:09 -05:00
dependabot[bot] 703f7b2e65
Bump mariadb-java-client from 2.5.1 to 2.7.2 (#2334) 
Bumps [mariadb-java-client](https://github.com/mariadb-corporation/mariadb-connector-j) from 2.5.1 to 2.7.2.
- [Release notes](https://github.com/mariadb-corporation/mariadb-connector-j/releases)
- [Changelog](https://github.com/mariadb-corporation/mariadb-connector-j/blob/master/CHANGELOG.md)
- [Commits](https://github.com/mariadb-corporation/mariadb-connector-j/compare/2.5.1...2.7.2)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-02-06 17:34:26 -05:00
michaelabuckley 6640395d6b
Merge pull request #2355 from hapifhir/mb-20210203-date-param-validation 
Improve date parameter validation
 2021-02-05 11:34:23 -05:00
Michael Buckley 4553ca2708 Fix expected error code. 
500 is a server error.  0 is a failed connection.  This should be a server error.
 2021-02-05 11:32:48 -05:00
Michael Buckley eee11c8844 Merge commit 'af5c45531ab59c1374cd99230bd5b8e32c692123' into mb-20210203-date-param-validation 2021-02-05 11:31:04 -05:00
Michael Buckley 42afcebd11 Merge in ca.uhn.fhir.rest.param.DateParamTest and add changelog. 2021-02-05 09:57:10 -05:00
JP af5c45531a
JPATerminologyProvider tests and bug fixes (#2346) 
* Add initial jpaTerminologyProvider tests, add EXM130 to test suite
 2021-02-05 08:22:02 -05:00
jamesagnew f3c0ecd54d Exception tweak 2021-02-04 17:31:39 -05:00
Kevin Dougan SmileCDR cfc5b87e3e
Removed an old comment from the root pom. (#2359) 2021-02-04 15:21:39 -05:00
JP 222bb7a8c0
Update to release versions of cql components (#2357) 2021-02-04 15:00:03 -05:00
Michael Buckley cb0f0161be Add support for legacy "=" prefix. 2021-02-04 13:31:56 -05:00
James Agnew 273a5bbbd7
Add BundleUtil utility method (#2356) 2021-02-04 13:13:25 -05:00
James Agnew 92669b29da
Add elastic test (#2348) 
* Add elastic test

* Rework

* Add test
 2021-02-04 11:04:27 -05:00
Michael Buckley 7a0a252ad3 Revert noisy change. 2021-02-04 11:00:02 -05:00
Michael Buckley 50acfbede3 Reject invalid param prefix. 
An unrecognized param prefix had been silently ignored.
Reject it with a DataFormatException instead.
 2021-02-04 10:34:03 -05:00
Kevin Dougan SmileCDR ba41daf4bf
Added a dependency on info.cqframework:quick since we also need this JAR at runtime. (#2351) 2021-02-03 17:15:51 -05:00
Ken Stevens 3dac899e3a begin with failing test 2021-02-03 15:01:12 -05:00
Kevin Dougan SmileCDR dd13827290
Added changelog entry for -measure operation. (#2347) 2021-02-03 14:01:20 -05:00
James Agnew e195bdc065
Try to avoid codecov fluctuations (#2344) 
* Try to avoid codecov fluctuations

* Less slowdown

* Another build tweak

* Build tweak

* Container bump

* Another build attempt

* One more test
 2021-02-03 09:44:57 -05:00
jamesagnew c0142a67b1 Credit for #2340 2021-02-02 14:27:42 -05:00
Marcelo Avancini 0d00954852
Added @Inherited to ResourceDef annotation (#2340) 
This change avoids duplication of ResourceDef on custom resources, where there is no changes on resource name or profile.
 2021-02-02 14:25:07 -05:00
Tadgh 589d323175
Merge pull request #2345 from hapifhir/mimetype-to-mediatype 
Change name of mimetype to mediatype
 2021-02-02 13:01:23 -05:00
Tadgh fc148e9e53 Change name of mimetype to mediatype 2021-02-02 11:46:39 -05:00
jamesagnew 1c6592b9fa License header updates 2021-02-02 11:26:45 -05:00
James Agnew 0f31d106e5
Allow empty request details in JPA (#2343) 
* Allow empty request details in JPA

* Test fixes
 2021-02-02 11:00:14 -05:00
IanMMarshall 54fac48cc0
Merge pull request #2342 from hapifhir/im_20210201_oracle_migration_fixes 
Address migration issues affecting Oracle DB when flyway is disabled
 2021-02-02 09:18:05 -05:00
Kevin Dougan SmileCDR c46330f54b
add evaluate measure to smile using the ProviderConstants definition of evaluate-measure (#2341) 
* Make the dstu3 and r4 MeasureOperationProvider classes use the ProviderConstants definition for evaluate-measure.
 2021-02-02 08:01:27 -05:00
Kevin Dougan SmileCDR ca28a4fe6c
Add CQL evaluate-measure operation. (#2339) 2021-02-01 19:55:51 -05:00
Tadgh ca93cd8246
Merge pull request #2338 from hapifhir/2325-channel-import-mimetype 
ResourceOperation mimetype
 2021-02-01 17:56:01 -05:00
Tadgh c5299df4d3 Use constant 2021-02-01 16:31:35 -05:00
ianmarshall 40bc754051 Address gaps in migration that can occur with Oracle DB when flyway is disabled. 2021-02-01 15:52:41 -05:00
michelgleeson 8b924171e7
Merge pull request #2336 from hapifhir/add_prefix_and_suffix_to_human_name_search 
refactor and modify for prefix and suffix
 2021-02-01 14:59:14 -05:00
Mike G 3a04675def Merge branch 'master' into add_prefix_and_suffix_to_human_name_search 2021-02-01 13:44:09 -05:00
Tadgh 5e36d71e41 fix mimetype 2021-02-01 13:43:47 -05:00
jamesagnew d65ed820a5 Javadoc build fix 2021-02-01 12:13:47 -05:00
Mike G f61cb163ae refactor and modify for prefix and suffix 2021-02-01 12:11:11 -05:00
Frank Tao 1d835d82d6
Fixed Ucum Conversion NullPointerException issue (#2331) 
* Fixed Ucum Conversion NullPointerException issue

* Revoke:save value to the original table if it can't be normalized
 2021-01-30 19:30:12 -05:00
jamesagnew 8c5b54bf54 Fix broken changelog 2021-01-30 19:26:58 -05:00