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hapi-fhir
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3603 Commits

Author SHA1 Message Date
James Agnew d320b78ae1
Improve synthea ingest performance (#3033) 
* Improve synthea ingest performance

* Tweaks

* Fix param splitting

* Update to test

* Add changelog

* Test fix

* Add some runtime checks

* Remove useless test

* Test fix
 2021-10-04 05:46:06 -04:00
James Agnew eca725afa4
Improve versioned URL support for ValueSet expansion (#2994) 
* Add test

* Test fixes

* Work on expansion errors

* Fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Work on fix

* Test fixes

* Test fixes

* Test fix

* Cleanup

* Test fixes

* Remove accidental commit

* Test fixes

* Version bump

* Add changelog

* Fixes

* Test fix

* Fix conflicts
 2021-10-03 19:47:23 -04:00
Tadgh cd1a4154c1 Merge branch 'remove-parallel-non-gets' of github.com:hapifhir/hapi-fhir into remove-parallel-non-gets 2021-09-28 09:55:13 -04:00
Tadgh 072c030c2d Remove modifications, defaults work 2021-09-28 09:55:06 -04:00
Tadgh ad05a5ec09
Merge branch 'master' into remove-parallel-non-gets 2021-09-28 09:43:01 -04:00
Tadgh dde0529b07 Remove extra semicolon 2021-09-27 15:36:17 -04:00
Tadgh 0c123384c7 add test for failing batch bug, remove bounding on queue 2021-09-27 15:34:19 -04:00
katie_smilecdr d121f6eff1 Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition 2021-09-27 15:10:19 -04:00
juan.marchionatto 2dec5f0821 Add explicit brackets 2021-09-27 13:47:23 -04:00
juan.marchionatto b4343a9823 Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-27 09:48:15 -04:00
juan.marchionatto 00ceb3f35d Add tests 2021-09-27 09:47:05 -04:00
michaelabuckley 5ee5b08b50
Merge branch 'master' into mb-fix-NoFt-tests 2021-09-24 16:38:05 -04:00
Ken Stevens b1dd40fdba
Try commenting out clearAllStaticFieldsForUnitTest to see what happens (#3034) 
* Try commenting out clearAllStaticFieldsForUnitTest to see what happens

* Rename clearAllStaticFieldsForUnitTest to randomizeLocaleAndTimezone and only do that
 2021-09-24 16:01:28 -04:00
juan.marchionatto d03f9cb35b Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-24 15:40:22 -04:00
juan.marchionatto eb9f29b3f3 Simplify code 2021-09-24 15:05:06 -04:00
katie_smilecdr d067586607 [3020] add documentation/changelog 2021-09-24 14:49:07 -04:00
Michael Buckley 11c5f7ee87 Some configs don't publish and FullText service at all. Make it optional. 2021-09-24 14:32:34 -04:00
Michael Buckley 79e2800f3e Fix cut-n-paste glitch in dstu2 NoFt 2021-09-24 13:48:01 -04:00
katie_smilecdr 8c145d1212 Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition 2021-09-24 13:01:38 -04:00
katie_smilecdr 6431ae4401 [3020] fix implementation/add tests 2021-09-24 13:00:05 -04:00
Michael Buckley db55837c3c Make our NoFt tests actually run without Ft. 
Hibernate search was always configured with a lucene heap engine in all JPA tests.
Added a new config param - hapi_test.enable_lucene - to disable with config params on the NoFt tests.
 2021-09-24 12:05:16 -04:00
jmarchionatto 4ab60e2f9b
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology 2021-09-24 08:59:15 -04:00
Ken Stevens 0db40c6118 support non-jpa batch 2021-09-24 00:39:15 -04:00
Ken Stevens 53c7476dae
hapi storage (#3024) 
* first pass moving core storage classes to storage-api

* move term service apis

* nearly done

* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor

* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor

* create new SearchConstants class to store platform independent search constants

* move a couple of subscription services

* move transaction processor adapter to storage

* version bump

* move searchparam

* fix test

* fix compile includes

* fix text

* fix docs
 2021-09-23 22:04:46 -04:00
katie_smilecdr 8bd14ae024 [3020] add $partition-management-lists-partitions 2021-09-23 16:08:56 -04:00
juan.marchionatto 91d9101785 Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology 2021-09-23 13:45:28 -04:00
juan.marchionatto d1e9c23c13 Remove loinc.xml file from application. Now it required as input for loinc upload. 2021-09-23 13:43:27 -04:00
juan.marchionatto 9c8fd26692 Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-23 11:56:44 -04:00
juan.marchionatto 751c5d0d05 Implement revision suggestions. Add changelog. 2021-09-23 11:55:50 -04:00
Tadgh ad9e0f1c9a
Merge branch 'master' into 3014-prevent-delete-expunge-cascade 2021-09-23 09:33:04 -04:00
Jimmy Deng 2436f748aa fix test 2021-09-22 14:38:53 -04:00
Jimmy Deng f9796b9e2a fix test 2021-09-22 12:52:28 -04:00
Jimmy Deng 26ac649946 changelog 2021-09-22 11:11:10 -04:00
Jimmy Deng 9a18422173 fix review 2021-09-22 11:09:50 -04:00
Jimmy Deng 48f73fa1d1 typo 2021-09-22 10:25:57 -04:00
Jimmy Deng c913707599 added header check 2021-09-22 10:15:22 -04:00
juan.marchionatto 81a4f0c78f Rename method for clarity. Increase test coverage. 2021-09-22 09:40:25 -04:00
juan.marchionatto fdf639d353 Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-22 09:25:48 -04:00
Justin Dar ad5297b714 fix for issue #3014 2021-09-21 13:09:08 -07:00
Ken Stevens 060791aeb4
hapi-fhir-storage-api (#3006) 
* rename hapi-fhir-jpaserver-migrate to hapi-fhir-sql-migrate and move hapi-tasks into jpaserver-persistence

* rename hapi-fhir-jpaserver-api to hapi-fhir-storage-api

* move bulk import apis

* create hapi-fhir-jpa

* create hapi-fhir-jpa

* move CircularQueueCaptureQueriesListener to japi-fhir-jpa

* move mdm logs to storage-api

* move gziputil to storage-api

* move quartz scheduling to hapi-fhir-jpa

* move default subscription channel factory to storage-api

* consolidated batch constants

* correct accidental Logs change

* remove dependency of cdr-api on cdr-persistence

* fix javadoc

* pom descriptions

* review feedback
 2021-09-21 15:36:08 +00:00
juan.marchionatto 371484a4ea Fix test to add now required id to loinc CodeSystem creation 2021-09-20 17:19:31 -04:00
juan.marchionatto 3d5c863276 Revert creation of test utility class finally not needed 2021-09-20 17:18:45 -04:00
juan.marchionatto 9c790a7374 Revert creation of test utility class finally not needed 2021-09-20 17:18:11 -04:00
juan.marchionatto 8a1d95f348 Add service to get CodeSystem from its forcedId without forcing rollback by ResourceNotFoundException in case not found 2021-09-20 17:14:42 -04:00
Johnson Lu f1f9c672ad
3110 zh disallow unknown extensions (#3009) 
* Added allowKnownExtensionsOnly() method such which calls setAnyExtensionsAllowed() to set myAnyExtensionsAllowed to false and modified changelogs to add entry for this ticket.

* Modified docs to remove description for .allowAnyExtensions() and included it within a description for .allowKnownExtensionsOnly() and also added test for .allowKnownExtensionsOnly()

* refactored allowKnownExtensionsOnly() to rejectUnknownExtensions()
 2021-09-20 15:40:56 -04:00
juan.marchionatto 1492b9220a Add test comment 2021-09-20 11:15:53 -04:00
juan.marchionatto d706caf949 merge master in 2021-09-20 11:08:17 -04:00
juan.marchionatto d372371f36 Make sure a loinc CodeSystem always has a ForcedId 2021-09-20 08:51:51 -04:00
Tadgh 3b1bf7aa09
Merge branch 'master' into 2849_add_new_mdm_param 2021-09-17 13:27:09 -04:00
Jaison B 8bb9aca8df Merge branch 'master' into 2849_add_new_mdm_param 2021-09-17 10:18:24 -06:00