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1654 Commits

Author SHA1 Message Date
jamesagnew 24ad8870cf Add to indexes 2018-06-16 18:23:05 -04:00
James Agnew d13d53c8ef Add a bit of logging 2018-06-15 14:01:07 -04:00
Rob Hausam 215e224e3d Updated terminology upload tests and artifacts to the new LOINC filenames. 2018-06-14 20:30:32 -05:00
James Agnew 99f80eef88 Performance enhancements to JPA searching 2018-06-15 01:13:44 +08:00
Rob Hausam 75c1b7baa8 Updated LOINC filenames to match 2.64 and future releases. 2018-06-14 11:33:35 -05:00
James Agnew a46b4a4637 Reindexing shouldn't stop unexpectedly 2018-06-13 22:03:15 +08:00
patrick-werner c2b2a7eaa7 added missing CORS Headers for Test Setup 2018-06-11 11:09:23 +02:00
James Agnew cc0e836680
Auth interceptor early checks (#995) 
* Validator fix

* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.

* FIx DSTU2 test that wasn't updated

* More test fixes
 2018-06-10 17:48:20 -04:00
frankjtao 35991cd21b #963: renamed the parameter to 'the*' 2018-06-07 14:19:44 -04:00
Diederik Muylwyk 903df68d2a
978 cli tools for importing exporting terminology mappings need to be fixed (#988) 
* Fixed export issue.

* Fixed import issue.

* Fixed tests.

* Fixed tests.
 2018-06-07 10:22:41 -04:00
patrick-werner 6bcddea416 Merge branch 'master' into documentOperation 2018-06-07 09:17:58 +02:00
James Agnew 6feb23896f Hopefully fix #983 2018-06-06 15:51:23 -04:00
James Agnew e7804b881c Fix CI issue 2018-06-06 11:39:06 -04:00
jamesagnew 583437d656 Prevent a crash if the application context has been set incorrectly in 
embedded deployments
 2018-06-06 08:37:25 -04:00
patrick-werner 49bdff1862 current state of $document 2018-06-05 18:32:59 +02:00
patrick-werner 38b7b00f52 Merge branch 'master' into documentOperation 2018-06-04 17:34:39 +02:00
patrick-werner bd0682c2b2 Merge remote-tracking branch 'origin/master' into documentOperation 2018-06-04 13:53:02 +02:00
jamesagnew 987679483a Version bumps 2018-06-03 15:29:10 -04:00
James Agnew e36bc3889c
Merge pull request #974 from Romanow88/master 
Fixes #972 Update Spring Data 1.11.6.RELEASE to 2.0.7.RELEASE
 2018-06-03 15:28:05 -04:00
James Agnew 30dd3c00b9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-06-02 08:59:48 -04:00
Roman Doboni 8f1effe5e3
Merge branch 'master' into master 2018-06-02 09:37:56 +02:00
James Agnew d52c1ed090 Add a bit more logging for occasional failing test 2018-06-01 17:43:29 -04:00
jamesagnew fedf4a870a License header updates 2018-06-01 07:41:01 -04:00
James Agnew 7f87def432 Fix tests 2018-06-01 07:40:33 -04:00
James Agnew a9cb4dae2f Allow storage of messages 2018-06-01 07:07:24 -04:00
frankjtao 73f12744ae #963 Improved performance for tag loading 2018-05-31 21:30:46 -04:00
jamesagnew abcf7852b1 Tests pasing locally 2018-05-31 09:10:34 -04:00
Romanow a336f33b4b Update Spring Data 1.11.6.RELEASE to 2.0.7.RELEASE 2018-05-31 14:42:15 +02:00
James Agnew 7e0584af2f Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9 2018-05-30 21:59:51 -04:00
James Agnew 2f07066c59 Test fixes 2018-05-30 21:59:41 -04:00
James Agnew c2afd9728d More test fixes 2018-05-30 21:57:17 -04:00
jamesagnew 432bc66208 Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9 2018-05-30 21:24:01 -04:00
James Agnew bb5d4110a2 Test fixes 2018-05-30 21:23:20 -04:00
jamesagnew 2684e2b030 Build fixes 2018-05-30 16:17:36 -04:00
jamesagnew d127a89047 Some test fixes 2018-05-30 11:01:43 -04:00
jamesagnew 833a46d07e Work on test compilation 2018-05-30 08:27:09 -04:00
jamesagnew 5a96482860 More work o JDK9 tests 2018-05-30 08:04:01 -04:00
James Agnew a52805e504 Work on JDK9 support 2018-05-30 05:45:08 -04:00
James Agnew 7951d883d0 Merge branch 'master' into java9 2018-05-29 08:43:21 -04:00
patrick-werner 83c8718c2a Merge branch 'v3.4.4' into documentOperation 2018-05-29 10:06:30 +02:00
Frank Tao 404d37cedc Fixed #963 : load history table once instead of one by one in the loop 
in the SearchBuilder class.
 2018-05-28 22:45:45 -04:00
Diederik Muylwyk 0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
patrick-werner 8872fc94c5 Merge remote-tracking branch 'origin/master' into documentOperation 
# Conflicts:
#	hapi-tinder-plugin/src/main/resources/vm/jpa_resource_provider.vm
#	hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans.vm
#	hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans_java.vm
 2018-05-28 17:05:50 +02:00
Diederik Muylwyk 2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
James Agnew a7eac969d9 Site enhancements for release 2018-05-28 08:53:36 -04:00
jamesagnew 67f21426cb Disable content header on response for non-create operations 2018-05-25 07:28:01 -04:00
jamesagnew 49aaa01db8 Fix compile issues 2018-05-23 17:42:48 -04:00
James Agnew 850aa99ddb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-23 16:28:35 -04:00
James Agnew ed6609e414 One more test fix 2018-05-23 16:28:13 -04:00
jamesagnew b146a80502 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-23 16:09:34 -04:00
jamesagnew 92dc258c6e Update license headers 2018-05-23 16:09:23 -04:00
James Agnew ba8827091a Reindexing fixes 2018-05-23 16:07:48 -04:00
James Agnew a3687e446e Correctly handle missing search params with new indexing infrastructure 2018-05-23 11:42:38 -04:00
James Agnew 0c5c347db7 FIx broken reindex process 2018-05-23 10:48:07 -04:00
James Agnew 2f2900e837 Improve indexing on JPA server in anticipation of a new indexing 
strategy in HAPI FHIR 3.5.0
 2018-05-23 08:09:57 -04:00
jamesagnew e8139192e0 FIx test issues 2018-05-21 13:07:11 -04:00
James Agnew c588e01a4d Handle invalid paths in Consent resource 2018-05-16 21:45:23 -04:00
jamesagnew 4d62120a18 Fix issues reported by errorprone 2018-05-15 08:44:15 -04:00
jamesagnew f9946fee61 Fixes to get the build passing once more 2018-05-15 07:34:44 -04:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
jamesagnew ccb859fdbe FIxes to get the synced build working 2018-05-13 08:08:34 -04:00
jamesagnew 150f27a9ca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-12 19:40:31 -04:00
jamesagnew 3d762b984b Sync to R4 definitions 2018-05-12 19:35:42 -04:00
James Agnew 9d24e8b040 Use HTTP 409 for conflict when two threds update the same resource 2018-05-11 17:41:07 -04:00
James Agnew f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
James Agnew b17eebd8d2 Squashed commit of the following: 
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
Diederik Muylwyk d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923) 
The ConceptMap operation $translate has been implemented.
 2018-05-10 10:52:56 -04:00
patrick-werner cbd3ddbbd7 $document operation on Composition working (1st draft) 2018-05-10 15:05:06 +02:00
James Agnew a0c40cf98a Move a few more constants around 2018-05-05 12:21:56 -04:00
James Agnew 5c505b7cd7 Refactor operations to use constants for their names 2018-05-05 08:27:45 -04:00
James Agnew 7688be1231 Work on getting java9 building 2018-05-03 18:34:29 -04:00
jamesagnew f66e6d055e Add license header 2018-05-02 14:54:11 -04:00
James Agnew bb25a97e66 FIx up logging rule 2018-05-02 14:34:55 -04:00
James Agnew 220cb1716f Add a new rule 2018-05-02 14:28:01 -04:00
James Agnew 45360d80cb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-02 14:19:28 -04:00
James Agnew 87666a1622 Use a direct subclass for the resource cache 2018-05-02 14:18:53 -04:00
jamesagnew 34d9646d8b Headers 2018-05-02 06:18:16 -04:00
James Agnew 994f2992d1 Return codesystem ID in upload terminology response 2018-05-01 07:56:02 -04:00
James Agnew e558132dba Restore deleted file 2018-04-30 16:48:39 -04:00
jamesagnew 0af8fbc5d3 Make expunge globally disabled by default 2018-04-29 07:47:26 -04:00
jamesagnew 770246583d Restore default constructor 2018-04-28 15:04:39 -04:00
jamesagnew 5bd191d192 FIx some failing tests 2018-04-28 13:21:48 -04:00
James Agnew 593a705365 Performance enhancements on the CapabilityStatement generator for JPA 
server
 2018-04-28 11:06:42 -04:00
jamesagnew e299b062a6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-24 19:14:56 -04:00
jamesagnew f1db751d1e Update headers 2018-04-24 19:14:33 -04:00
James Agnew 09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew 07e7af746f Work on expunge operation 2018-04-22 22:03:23 -04:00
James Agnew 591539cf13 Add expunge method 2018-04-22 18:34:56 -04:00
jamesagnew 51216c0010 Start work on expunge operation 2018-04-22 15:29:57 -04:00
James Agnew 8ec5ca69bb Add another translation type 2018-04-21 15:25:23 -04:00
James Agnew 488890155c Loinc uploader updates 2018-04-21 14:32:17 -04:00
James Agnew 1ff50cb0db Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-17 18:26:39 -04:00
James Agnew 162069776a Correctly handle encoding contained resources where some have user 
assigned IDs and some do not
 2018-04-17 18:26:06 -04:00
jamesagnew aecb315886 Loinc updates 2018-04-15 18:34:56 -04:00
jamesagnew 13242d77ed Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-15 17:43:16 -04:00
jamesagnew 0c955f7f27 More loinc updates 2018-04-15 17:20:36 -04:00
James Agnew 8bfd7913c8 More work on loinc loader 2018-04-15 17:19:34 -04:00
patrick-werner 26e9211db8 Merge tag 'v3.3.0' into documentOperation 2018-04-11 15:56:57 +02:00
James Agnew b3a9ea263f Fixes to loinc mapping 2018-04-10 21:19:00 -04:00
James Agnew 260aa9e9fa Improve the loinc uploader 2018-04-06 17:35:19 -04:00
jamesagnew 26710f7608 Increase column lengths 2018-04-06 17:29:03 -04:00
James Agnew f013448917 More work on updating term services 2018-04-06 17:06:34 -04:00
James Agnew 7d6582fe73 More updates to loinc uploading 2018-04-06 16:41:28 -04:00
James Agnew 22b8e05b1f Add some logging 2018-04-06 16:14:59 -04:00
James Agnew 0f269a1ab1 Correctly save deferred concepts 2018-04-06 14:23:41 -04:00
James Agnew 3eab3c5fab More mapping for loinc RADS 2018-04-06 12:23:10 -04:00
James Agnew 2f4bcfe5d6 Understand equal mappings 2018-04-06 11:25:46 -04:00
jamesagnew 7334800684 Better logging 2018-04-06 09:50:41 -04:00
James Agnew d624556e18 Some updates to the loinc mapper 2018-04-06 09:50:18 -04:00
James Agnew f0f93d2330 Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-06 09:13:08 -04:00
James Agnew 832558b411 Updates to handler 2018-04-06 09:12:52 -04:00
jamesagnew 2c818d5b4a Update handler names 2018-04-06 09:12:22 -04:00
jamesagnew 22bec81bff Fix an intermittent test failure 2018-04-04 10:11:19 -04:00
jamesagnew b8b3ff8a8f Loinc property updates 2018-04-04 09:34:16 -04:00
jamesagnew 33ea06b983 Fix compile issues 2018-04-03 06:29:14 -04:00
jamesagnew f56151d5a9 Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-02 22:13:29 -04:00
James Agnew b6232b5683 loinc updates 2018-04-02 21:28:31 -04:00
James Agnew e31e1c029d Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-02 09:13:27 -04:00
James Agnew fe25d93fe6 Sync with master 2018-04-02 09:08:11 -04:00
jamesagnew c5b286921e Tests all passing 2018-03-30 15:18:57 -04:00
jamesagnew 673a3d6272 Bump to JDK8 2018-03-30 08:54:04 -04:00
jamesagnew 817569228b Merge branch 'master' into loinc_loader_update 2018-03-30 08:29:14 -04:00
jamesagnew dfdee93271 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-29 06:55:07 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew ba46d330f1 Add a test 2018-03-29 06:21:45 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
James Agnew 4ad00c20d8 Add a test 2018-03-29 05:40:24 -04:00
jamesagnew 94b880fd4d Remove accidentally committed useless file 2018-03-28 10:13:51 -04:00
jamesagnew 4ba56d5021 Reorganize the OSGI projects a bit 2018-03-28 06:15:28 -04:00
James Agnew 55fc20b87e Add tests for #877 2018-03-26 10:04:49 -04:00
James Agnew 5beeda1af3
Merge pull request #877 from anthonys123/master 
Fixes for issue #512 (:contains modifier not working).
 2018-03-26 08:40:44 -04:00
jamesagnew a3a15ac9d8 Add test and credit for #819 2018-03-24 06:45:41 -04:00
James Agnew 4f519e0528
Merge pull request #819 from splatch/issue-815 
Support for negation in search operations
 2018-03-24 06:38:15 -04:00
James Agnew c6e1aac98d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-22 07:16:36 -04:00
James Agnew 45a16fe066 More loinc work 2018-03-22 07:16:16 -04:00
jamesagnew 1689dc889e Make server operation interceptor not perform superfluous calls for 
conditional and no-op operations
 2018-03-22 06:52:30 -04:00
James Agnew b89e0e7020
Merge pull request #879 from darktyco/issue-878-bundle-update-fix 
Fixes issue #878 where resources in a bundle are updated even when no…
 2018-03-22 06:50:39 -04:00
patrick-werner b97d303481 modified tinder plugin generation templates for Composition 2018-03-22 08:24:22 +01:00
James Agnew 308ac63a77 Merge branch 'master' into loinc_loader_update 2018-03-20 07:53:41 -04:00
James Agnew 9c5e32d7eb Fix up some logging 2018-03-20 07:53:21 -04:00
James Agnew 4ef07d27aa Try to avoid occasional test failure 2018-03-19 10:20:58 -04:00
James Agnew 6359f7f8a1 More work on loinc 2018-03-19 08:51:02 -04:00
James Agnew 3f6861ef55
Merge pull request #812 from jamesagnew/subscriptionsWithoutPayloadPOST 
Added ability to create a resthook subscription without returning a p…
 2018-03-19 06:25:31 -04:00
James Agnew e9ee87210a
Merge pull request #806 from honestica/quickfix-imcompartment 
fix inCompartment for a collection of owners
 2018-03-19 06:16:12 -04:00
patrick-werner ff04ab3358 ${argLine} -> [at]{argLine} 
see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
 2018-03-19 10:45:33 +01:00
patrick-werner baa80f5cd3 started document operation implementation 2018-03-19 10:41:14 +01:00
patrick-werner c245798cc7 started document operation implementation 2018-03-15 17:23:49 +01:00
jamesagnew 30cd63b929 More loinc work 2018-03-11 19:11:31 -04:00
James Agnew 33554189a1 More loinc work 2018-03-11 15:46:59 -05:00
James Agnew b9802d0101 Document ontology done 2018-03-11 10:02:13 -05:00
James Agnew a5a7d75e58 Lots more additions to LOINC 2018-03-11 09:44:11 -05:00
James Agnew 5a653aeb20 Work on loinc mapping 2018-03-10 20:31:27 -03:00
James Agnew 611ee457cb Lots of addition of loinc 2018-03-07 13:33:49 -03:00
darktyco b18bb033bf Fixes issue #878 where resources in a bundle are updated even when no data changes 2018-03-06 13:28:06 -05:00
Anthony Sute 4da46cdb26 Fixes for issue #512 (:contains modifier not working). 2018-03-06 11:18:53 -05:00
jamesagnew e201091e3a Update licenses for changed files 2018-03-04 13:53:04 -05:00
jamesagnew d22670ddb5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 12:21:07 -05:00
James Agnew 2f7751a079 Move stopwatch into hapi-fhir-base and add timing into to client 
LoggingInterceptor
 2018-03-04 12:13:18 -05:00
jamesagnew 8bdca012d6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 11:04:07 -05:00
jamesagnew 07290ae8a0 Sync to latest R4 code 2018-03-04 11:02:47 -05:00
James Agnew 928cf23b4c Logging enhancements 2018-03-04 10:21:39 -05:00
James Agnew cda27fdd18 Fix broken test 2018-03-01 14:06:31 -05:00
James Agnew a18303f117 Fix #872 - Include resource type in JPA uri search parameter criterias 2018-03-01 08:31:41 -05:00
jamesagnew ecf570ced9 More testing on #872 2018-03-01 07:25:35 -05:00
jamesagnew 7e4877c524 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-01 06:20:46 -05:00
jamesagnew a6e59a0f76 License header updates 2018-03-01 06:20:37 -05:00
James Agnew 790aaeb4ea Tests for #872 2018-02-28 21:34:32 -05:00
James Agnew 2eee606468 Fix 2 tests 2018-02-25 14:57:19 -05:00
James Agnew ef6ee83744 Remove test which is no longer applicable 2018-02-24 23:09:30 -05:00
James Agnew 136455f312 Fix #863 - Allow custom search parameters to use multiple bases 2018-02-24 22:10:55 -05:00
jamesagnew fd285b282f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-24 12:02:28 -05:00
jamesagnew d93bdfa47d Update license header 2018-02-23 15:54:57 -05:00
James Agnew 3b2930f8e9 Prevent a crash in testpage overlay when deleting a resource 2018-02-23 15:24:20 -05:00
James Agnew e241b31905 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-21 17:16:08 -05:00
James Agnew 7723405024 Fix #859 - Remove unused import on com.sun.prism 2018-02-21 17:15:15 -05:00
jamesagnew 72cf22e3a9 Fix #854 - Process ID substitutions on URIs for JPA 2018-02-20 07:32:49 -05:00
James Agnew 81305fb17f Don't deliver subscription results for deleetd resource 2018-02-19 20:58:55 -05:00
jamesagnew c38e306539 Allow disabling of reloading resources in subscription 2018-02-18 11:47:21 -05:00
jamesagnew a60e5cab2a Add config 2018-02-18 11:11:35 -05:00
jamesagnew 2f4ac42edb One more test fix 2018-02-18 09:17:04 -05:00
jamesagnew 3f1a0e81c7 Avoid endless reindex loop 2018-02-17 16:10:44 -05:00
jamesagnew e89f8e5ba4 Fix crash with unique search parameter updates in JPA 2018-02-16 07:39:46 -05:00
James Agnew 2847edd04a Correct subscription read before send 2018-02-15 17:38:29 -05:00
James Agnew 8ea527fa76 Make sure we load subscriptions from DB at some point 2018-02-15 17:13:27 -05:00
jamesagnew 4f45ad87f3 Adjust unit tests to deal with asynchronous search parameter registry 2018-02-15 07:12:30 -05:00
James Agnew e6253b7f22 Refresh search parameter cache asynchronously 2018-02-14 11:10:30 -05:00
James Agnew 329675a81d Fix test 2018-02-12 15:38:38 -05:00
jamesagnew d259b9a65d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-12 11:52:58 -05:00
James Agnew ab3ca5749a Add test for #793 2018-02-12 09:34:11 -05:00
jamesagnew a94a1370e7 Correct localization issue in test 2018-02-11 21:54:29 -05:00
James Agnew 18e4d85625 Add functions to stopwatch 2018-02-11 19:26:03 -05:00
James Agnew 261ecb6460 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-11 16:39:58 -05:00
James Agnew 388f51a823 Add some tests 2018-02-11 16:38:33 -05:00
jamesagnew 32b25f47d8 Update license header 2018-02-11 12:02:39 -05:00
James Agnew 7046d2fe94 Improve subscription procesing within a transaction 2018-02-10 17:05:09 -05:00
James Agnew 2edc9910e5 Add a test 2018-02-09 10:29:20 -05:00
James Agnew 80353e5d42 Better handle large search result deletion in JPA 2018-02-08 17:55:46 -05:00
jamesagnew fb327c60cd FIx spring boot issue 2018-02-04 15:04:45 -05:00
jamesagnew 48330a0fa6 Name the task scheduler bean 2018-02-04 13:32:34 -05:00
jamesagnew 087a130ded Test tweak 2018-02-04 08:50:52 -05:00
jamesagnew 86a0774305 Fix an issue in subscription interceptor which prevented the server from 
starting if an invalid subscription was already in the database
 2018-02-03 19:20:58 -05:00
James Agnew 3cbf669007 Don't crash on startup if an invalid subscription is in the database 2018-02-03 15:47:48 -05:00
James Agnew 1b9bbc90d6 Add some logging on failing test 2018-01-31 08:24:10 -06:00
James Agnew 4af52c160f Try to get HAPI building on JDK9 2018-01-31 06:41:24 -06:00
James Agnew 1c5a07b5a0 Fix #822 - Respect chained method params in a transaction search 2018-01-30 16:20:25 -06:00
James Agnew c5165e860b Add test for #811 2018-01-30 14:43:21 -06:00
James Agnew 8d468de551 Use R4 validator for DSTU3 validation 2018-01-30 11:16:04 -06:00
James Agnew 044b9f584a Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-28 14:02:53 -06:00
James Agnew f976b7bf7e Add new interceptor method which enabled interceptors to modify response 2018-01-28 14:01:20 -06:00
jamesagnew 2e4f80d7a3 Fix #831 - Remove useless TagListParam annotation 2018-01-26 10:03:21 -05:00
jamesagnew 6b366a58f7 Fixing occasionally failing test 2018-01-26 09:45:21 -05:00
jamesagnew 4e0e8fb8f8 Version bump a few dependencies 2018-01-26 06:22:06 -05:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 4fd3e20d06 Remove duplicate resource body creation (Merge branch 'optimize_jpa') 2018-01-21 18:16:11 +08:00
James Agnew 4dcce4e582 Fix #832 - Correctly normalize text with Korean characters 2018-01-21 14:55:14 +08:00
jamesagnew 001bdbc07e Version bump to 3.2.0 2018-01-13 04:07:57 -05:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
James Agnew 01186ec8cb Squashed commit of the following: 
commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 18:59:15 2018 -0500

    Tests all passing

commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 08:21:58 2018 -0500

    Almost compiling
 2018-01-12 18:59:43 -05:00
James Agnew f58a03dacf Add some tests 2018-01-11 09:26:28 -05:00
jamesagnew b594b8eee2 FIx issues from merge 2018-01-10 06:27:23 -05:00
jamesagnew b0e196e5cf Merge branch 'master' into optimize_jpa 2018-01-10 06:27:15 -05:00
Łukasz Dywicki 66b6149bf6 Support for negation in search operations #815. 2018-01-09 22:29:01 +01:00
James Agnew d375977410 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-08 14:14:42 -05:00
James Agnew 9a72927dbc Fix #808 - Use version from meta if not found in the resource ID 2018-01-08 14:07:27 -05:00
jamesagnew 0352d48720 Bump copyright message to 2018 2018-01-08 13:52:15 -05:00
jamesagnew b420d02f2a Fix tests 2018-01-08 08:51:29 -05:00
jamesagnew 19c6369175 Test fix 2018-01-08 08:20:39 -05:00
jamesagnew 7e2459fbdc FIx up tests 2018-01-08 08:18:34 -05:00
jamesagnew 6fc88caa51 More work on optimizing JPA 2018-01-08 07:15:58 -05:00
James Agnew abf76a778f Add some tests for unique search params 2018-01-08 07:15:31 -05:00
James Agnew 377bae8c16 Allow interceptors to modify request contents 2018-01-06 14:27:32 -05:00
James Agnew 0369b7fd70 JPA server cleanup and add some tests 2018-01-05 16:41:18 -05:00
James Agnew 8b38334955 Fix some tests 2018-01-04 18:12:13 -05:00
James Agnew 2f5ce64755 Start work on removing duplicate resource body 2018-01-04 14:45:17 -05:00
James Agnew b18e71d4f5 Added new callbacks to IServerOperationInterceptor to be invoked before 
other operation methods
 2017-12-23 17:13:33 -05:00
Jeff Chung eb2d21ac4b Added ability to create a resthook subscription without returning a payload using an HTTP POST for notification 2017-12-22 17:14:45 -08:00
James Agnew fe37c87e78 Redirect test output to a file 2017-12-22 16:52:22 -05:00
James Agnew ce247ce37f Reuse forks when running surefire 2017-12-22 16:20:21 -05:00
James Agnew 5425172816 More travis fighting 2017-12-22 15:53:08 -05:00
James Agnew bf3c09f43d
Merge pull request #810 from darktyco/issue-809-date-search-params 
Fixes issue #809 where date search params get deleted upon resource update
 2017-12-22 15:43:07 -05:00
James Agnew 56fcdef93a Try still more to get travis building 2017-12-22 15:10:08 -05:00
James Agnew a8e5413d1f Fix two issues found by ErrorProne 2017-12-22 13:47:40 -05:00
Kyle Meadows 18344f2e32 Fixes issue #809 where date search params get deleted upon resource update 2017-12-22 10:35:14 -05:00
Jiajing LIANG 1f88823e8b add some test to check inCompartment rule works for a collection of owners, with Dstu3 and R4 fhir context 2017-12-21 11:42:38 +01:00
James Agnew 502f58022e Add some sorting tests 2017-12-18 06:03:09 -05:00
James Agnew 8595b7059e Let's try and get travis passing now 2017-12-15 16:38:32 -05:00
James Agnew ff477885e1 More fighting with tests 2017-12-13 20:13:18 -05:00
James Agnew 3a6a045d87 Fix two more tests.... grr... This should get appveyor working at least. 2017-12-13 17:52:56 -05:00
James Agnew cba3b5b6d8 More test fighting... 2017-12-13 15:24:16 -05:00
James Agnew 44ec091b35 Still more test tweaks 2017-12-13 13:29:24 -05:00
James Agnew 3363c5ce1b Still fighting with tests to get travis happy 2017-12-13 12:13:08 -05:00
jamesagnew 1a9b63aed6 Fix tests 2017-12-13 07:55:35 -05:00
jamesagnew 96e3135793 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-12-13 07:05:41 -05:00
jamesagnew 4ad5033b13 Add tests 2017-12-13 07:05:30 -05:00
James Agnew 0997167d50 Add test cases for DSTU2 custom search params 2017-12-12 22:08:02 -05:00
James Agnew 3e8fc0c89c Merge branch 'dstu2_custom_structs' 2017-12-12 21:47:05 -05:00
James Agnew bdf734fc3c Examples cleanup 2017-12-08 16:33:45 -05:00
James Agnew c86a2866d8 Reduce search log noise 2017-12-08 14:25:47 -05:00
jamesagnew 561dc86eb4 Test updates 2017-12-08 07:46:59 -05:00
James Agnew 7ce70a792d Add test for #801 2017-12-07 18:17:24 -06:00
James Agnew e838b0e32d Remove unneccesary column 2017-12-07 18:17:24 -06:00
James Agnew ea8ebd88ac Additional timing tweak to get tests passing across platforms 2017-12-07 11:27:11 -06:00
James Agnew f4bc82b300 Rename resource ID property to Resource server ID 2017-12-07 07:20:22 -06:00
James Agnew bbf1151d93 Try to prevent timing failures on Windows 2017-12-07 07:04:26 -06:00
James Agnew 8fae452eaa A little more test tweaking 2017-12-06 23:42:22 -06:00
James Agnew 36e719f92f Allow server assigned UUIDs instead of sequential IDs if conigured to do 
so
 2017-12-06 23:16:10 -06:00
James Agnew 0fb10b2636 Oops- fix one more test glitch 2017-12-05 14:33:01 -05:00
James Agnew d00c7dbea8 Giant breakthrough in fixing sporadic test failures! 2017-12-05 12:08:56 -05:00
jamesagnew d710682fed Fix searching in JPA with _id and _content params 2017-12-05 07:25:34 -05:00
jamesagnew e1c62ef03e One more test fix 2017-12-05 06:06:09 -05:00
jamesagnew 3a7fba6582 Fix 2 tests 2017-12-04 23:20:43 -05:00
James Agnew 863c4b370c Add some test debug logs 2017-11-25 20:32:42 -05:00
James Agnew 3e296f9d1b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-11-25 17:53:01 -05:00
James Agnew 6afe6804db Fix #796 - Correctly escape spaces in generated URLs 2017-11-25 17:52:12 -05:00
jamesagnew 5b909b4746 Version bump to 3.2.0-SNAPSHOT 2017-11-24 13:32:47 -05:00
James Agnew 584ba1eec4 Fix a crash on _include which doesnt find any matches 2017-11-24 12:22:26 -05:00
jamesagnew 42dd34252d Version bump to 3.1.0 2017-11-23 13:27:21 -05:00
jamesagnew 94be52304b Fix tests 2017-11-23 11:50:30 -05:00
James Agnew fc991a3333 Fix tests 2017-11-23 11:36:20 -05:00
jamesagnew ffac599a30 Credit and tests for #762 2017-11-23 06:42:10 -05:00
jamesagnew 9b246852ef Add test for #762 2017-11-22 19:45:36 -05:00
jamesagnew 98b2549135 Formatting 2017-11-22 19:45:18 -05:00
jamesagnew be76b90e7a Test formatting only 2017-11-22 19:22:32 -05:00
James Agnew 3aebfb575a
Merge pull request #756 from alvinleonard/751-fix-deletebyurl 
Fix deleteByUrl to respect InCompartment Authorization
 2017-11-22 19:19:32 -05:00
jamesagnew a4cbde8269 Prevent a spurious test failure 2017-11-22 18:45:54 -05:00
James Agnew 4042a3a353 Prevent accidental deletion of deeply nested resources in JPA server 2017-11-22 18:17:35 -05:00
James Agnew a87323fa08 Add tests 2017-11-17 09:53:44 +01:00
James Agnew 0d0300623f Streamline search coordinator to improve performance 2017-11-15 18:31:03 +01:00
James Agnew 6ca1498277 Fix tests for spring boot 2017-11-13 15:49:12 -05:00
James Agnew 49f4ac4fc5
Merge branch 'master' into analyzer-def-using-search-mapping 2017-11-13 13:32:40 -05:00
James 32a4a081d9 More test work -- Ahhhhh travis grr 2017-11-08 20:01:54 -05:00
James Agnew f91977cbac Beef up logging in tests 2017-11-08 16:53:39 -05:00
James Agnew 395c8b6acc Add test for #773 2017-11-07 09:58:42 -05:00
James Agnew 37c8e6c645 Add test for #751 2017-11-05 18:52:28 -05:00
James Agnew 75bfb6af1b Add support for Binary X-Security-Context header in server 2017-11-02 11:38:43 -04:00
James 3cd7c8a61c Fix tests to work on Windows 2017-10-31 20:38:26 -04:00
James 5a5933f232 Remove dependencies on StAX on Android 2017-10-30 16:41:31 -04:00
James Agnew 64e120cef8 Custom structs in progress 2017-10-30 16:19:09 -04:00
James 792035f8af Add more logging to occasional failing test 2017-10-26 21:45:50 -04:00
James Agnew f475483e9b Test fix 2017-10-26 12:05:45 -04:00
James d461567433 Allow cache-control to be used with CORS 2017-10-26 09:08:10 -04:00
James 15ba0dff03 Clean up email subscription type 2017-10-26 06:02:12 -04:00
James 59975948b2 Test fixes 2017-10-22 21:56:44 -04:00
James 33f9437472 Try to get tests passing under load 2017-10-21 16:35:47 -04:00
James b79dd75fce Update to Spring 5 2017-10-19 07:40:43 -04:00
James Agnew a265de8649 Validation fixes for QuestionnaireResponse validation 2017-10-18 11:59:22 -04:00
James Agnew 90ecaef87c Allow Fulltext search Svc to be null 2017-10-17 16:43:03 -04:00
James 73382d85ca Fix #761 - Restore codesystem package from DSTU3 and add unit tests to 
verify existence
 2017-10-17 15:18:36 -04:00
James 0959156a4a Faster processing for mandatory count searches 2017-10-17 14:11:05 -04:00
James Agnew 8b7723b6e8 Make sure a transaction is active when activating subscriptions 2017-10-16 21:28:19 -04:00
James Agnew 175f9dfc5a Remove dependency on StAX for XML parsing in DSTU2 Xhtml type 2017-10-16 17:22:50 -04:00
James a782bd7630 Fix a number of problems reported by ErrorProne 2017-10-16 10:00:27 -04:00
James Agnew 9ca85b4cf3 Re-enable errorprone on standard hapi fhir build. woohoo! 2017-10-15 11:27:30 -04:00
James 9abc75dc32 Fix another test 2017-10-13 11:03:43 -04:00
James Agnew 290894557d Optionally require JPA server to collect count information even for 
large searches
 2017-10-13 06:31:37 -04:00
James Agnew 9b31741147 Correctly process ifMatch in Bundle entries for JPA server transaction 2017-10-11 13:00:37 -04:00
James Agnew 78b7188fbc Fix validation error when Bundle has no type 2017-10-11 10:20:12 -04:00
James fddda443a2 Remove hamcrest-date library that caused conflicts 2017-10-11 06:33:15 -04:00
James 31fb1236a1 Reuse bundle ID when returning query cache results 2017-10-11 06:05:14 -04:00
Alvin Leonard 2114dd7706 We need to set the resource id to the entity id after the update entity. 2017-10-11 15:09:41 +11:00
Alvin Leonard 6551eb0a4e Fix deleteByUrl to respect InCompartment Authorization 
Moved the assignment of the resource to delete before the actual delete as it will be used by the authorization to determine if this resource is in the compartment.
 2017-10-11 13:40:03 +11:00
Jiajing LIANG 86fb1de3ae rename file 2017-10-09 18:34:49 +02:00
Jiajing LIANG 65c3a316f2 move out the analysers definitions from entity classes 2017-10-09 18:34:03 +02:00
James Agnew bacd0bfbbb Squashed commit of the following: 
commit 7ff895de77
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:25:06 2017 -0400

    More test fixes

commit c9fee23e48
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:14:52 2017 -0400

    More tests work

commit c796e19458
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:00:26 2017 -0400

    Get tests passing

commit eb2787d30c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 14:08:23 2017 -0400

    Add an optimistic lock to the ResourceTable

commit ff85503acb
Author: James <jamesagnew@gmail.com>
Date:   Fri Oct 6 08:56:35 2017 -0400

    Add a test
 2017-10-06 15:33:24 -04:00
James Agnew b4127674e4 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-10-05 13:42:31 -04:00
James Agnew 0ab8a9a0ba Fix #744 - Long search URLs on Derby shouldn't cause a failure 2017-10-05 13:41:22 -04:00
James ce720f5601 Add support for Cache-Control header in JPA server and client 2017-10-05 13:38:53 -04:00
James 4d1ab2734f Use correct parameter name for expand operation 2017-10-02 19:21:52 -04:00
James 56a71f9222 Performance enhancements to JPA 2017-09-29 09:28:47 -04:00
James Agnew 9ac6014a3c Add test logging 2017-09-29 09:11:54 -04:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
James Agnew ac7074ffdd More notes 2017-09-26 19:05:53 -04:00
James e19c13fa6f Prepare 3.0.0 release 2017-09-24 17:55:16 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James Agnew 4f8a2d36f5 Fix import statements 2017-09-23 11:09:26 -04:00
James Agnew 478dc1d507 Create model for subscription messages 2017-09-23 10:14:50 -04:00
James c115fbfd15 Add serializable message type 2017-09-23 07:42:29 -04:00
James be07ebc4ef Subscription refactoring 2017-09-21 08:33:20 -04:00
James 5f89f6ed16 Improve test logging 2017-09-21 06:13:30 -04:00
James 2fa912a43f Use serialized messages for queues 2017-09-19 22:01:36 -04:00
James Agnew d65664cd9b Work on test 2017-09-18 18:06:27 -04:00
James Agnew 1402c5e4e2 Remove some useless logging 2017-09-18 18:04:08 -04:00
James Agnew 79cb251b7e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-09-17 20:05:59 -04:00
James Agnew fc7144ee03 Work on JPA optimization 2017-09-17 20:05:28 -04:00
James feb9852a25 Allow disabling :missing indexes in JPA 2017-09-17 18:37:09 -04:00
James 9eb2848aca One more test fix 2017-09-16 19:48:01 -04:00
James 78929752af License headers 2017-09-16 19:46:19 -04:00
James 36d9180570 Fix broken tests 2017-09-16 17:47:06 -04:00
James Agnew 7a878152c4 Refactor subscriptions to use a single codebase across versions 2017-09-16 15:03:22 -04:00