9bc4859761
Add test
2021-06-23 20:55:22 -04:00
59653759ed
Update tests
2021-06-23 15:58:14 -04:00
6feaa12593
Merge pull request #2747 from hapifhir/2746_npe_in_mdm_utils
...
Added null checks
2021-06-23 09:51:53 -04:00
e3158045aa
License header
2021-06-22 23:25:36 -04:00
068de6a708
Test cleanup ( #2749 )
...
* Start work on tag mode 3
* Add changelog
* Test fix
* Test cleanup
2021-06-22 23:09:03 -04:00
8379392e16
Add inline tag mode ( #2748 )
...
* Start work on tag mode 3
* Add changelog
* Test fix
2021-06-22 23:08:09 -04:00
9caa5e68fc
Added changelog
2021-06-22 15:52:21 -04:00
5c9f2617da
Code review
2021-06-22 15:23:03 -04:00
95012623f6
Added null checks
2021-06-22 15:12:10 -04:00
912b44c3fa
Merge pull request #2734 from hapifhir/2732-bump-conceptmap-group-element-display-storage-size
...
Address #2732
2021-06-21 08:33:36 -04:00
0d0a0fd6a2
Add transaction write semaphore interceptor ( #2744 )
...
* Add transaction write semaphore interceptor
* Add changelog
* Test fix
* Two missing commits on TransactionConcurrencySemaphoreInterceptor
* License header
2021-06-21 05:38:53 -04:00
f0cfb5ad1b
License headers
2021-06-21 05:29:02 -04:00
6ea1438f1d
Add transaction write semaphore interceptor ( #2743 )
...
* Add transaction write semaphore interceptor
* Add changelog
* Test fix
2021-06-20 12:55:49 -04:00
0b05c730fb
don't create a channel if subscriptions are disabled. ( #2733 )
...
* don't create a channel if subscriptions are disabled.
* review feedback
* fix test
* fix intermittent
* fix intermittent
2021-06-19 00:00:16 -04:00
32ac16e2aa
add a limit to mdm candidate searches ( #2742 )
...
* done
* verbal review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2739-max-mdm-matches.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-06-18 20:48:34 -04:00
8b205b23d0
Fix history paging ( #2741 )
...
* Fix history paging
* Add changelog
* Add license header
2021-06-18 17:47:51 -04:00
097a2f70b3
add partition support to $evaluate-measure ( #2736 )
...
* Finished adding partition support to $evaluate-measure
* review feedback
2021-06-18 14:22:57 -04:00
164e684d7c
Merge branch 'master' into 2732-bump-conceptmap-group-element-display-storage-size
2021-06-17 15:14:05 -04:00
5d246bcca8
License header
2021-06-17 14:40:00 -04:00
324201b105
Make change
2021-06-17 11:28:02 -04:00
659efa786c
ValueSet Expansion Should Preserve Order ( #2724 )
...
* Add test
* FIxed
* Add changelog
* Add test
* Intermittent test failure fix
* Build fix
* Build fix
* Test fix
* Test fixes
* Fix checkstyle issue
* Test fix
* Add test logging
2021-06-16 07:20:59 -04:00
6f680af3ce
SearchBuilder NPE ( #2726 )
...
* Add failing test first.
* Fixed the NPE and enhanced the test.
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/builder/SearchBuilder.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2021-06-15 11:50:18 -04:00
134631fdee
Convert delete expunge to use Spring Batch ( #2697 )
...
* prepare to add $delete-expunge operation that will create a spring batch job
* Add operation
* Wire up jpa provider. Begin with failing test.
* Copy/paste bulk import job as a starting point.
FIXME with proposed design
* delete expunge job parameter validation with test
* implemented reader
stubbed processor, writer
* wip for master merge
* started implementing reader
* started implementing reader
* working with stubs
* happy path batch delete expunge is done
* Provider done but test not passing. Guessing batch infrastructure not running in that test.
* IT test works now
* add reader test
* Converted delete _expunge=true to use new batch job
* DeleteExpungeDaoTest passes
* Fix test
* Change batch size to integer
* rename search count to batch size
* Make delete expunge partition aware
* updated docs
* pre-review cleanup
* change log
* add partition id to SystemRequestDetails
* Make RequestPartitionId serializable
* Change delete expunge provider to use partition id instead of tenant name
* fix tests
* test pointcut gets called
* assert on pointcut calls
* Add resource type to STORAGE_PARTITION_SELECTED pointcut
* bump hapi-fhir version
move expunge provider parameters from JpaConstants to ProviderConstants
* bump hapi-fhir version
* copyrights
* restore deleteexpungeservice for mdm
* restore deleteexpungeservice for mdm
* fix test
* public constants
* convert instant to date
* Moved expunge constants to ProviderConstants
* final review
* disabling InMemoryResourceMatcherR5Test.testNowNextMinute() to see if I can get a clean test run
* fix tests
* fix tests
* fix tests
* fix tests
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* improve logging
* bump version
* version bump
* recovering from failed merge
* unzip RequestListJson per Gary's suggestion. I didn't want to do it at first, but as usual Gary was right.
* fix serialization
2021-06-15 10:36:05 -04:00
376a84d213
Version bump
2021-06-14 13:12:34 -04:00
b934abb297
Impropve transaction Performance ( #2717 )
...
* Work on changes
* Work on perf
* Work on testing
* Work on perf
* Work on perf
* Work on fix
* Work on perf
* Ongoing work
* Add changelog
* Additional docs
* Test fixes
* Address review comments
* Test fix
2021-06-14 13:08:19 -04:00
48eea5a7cc
Prepare changelog for 5.4.1 release
2021-06-14 09:13:41 -04:00
474cca877a
Merge branch 'rel_5_4_2'
2021-06-14 09:07:26 -04:00
14070914ae
Add test
2021-06-14 05:53:22 -04:00
3ee05b5a62
Refactor transaction processing
2021-06-13 19:42:26 -04:00
a3fd23e70a
Merge branch 'rel_5_4_2'
2021-06-13 19:36:11 -04:00
39d7d4ad03
Use pageSize variable to hold page size ( #2719 )
...
* Use pageSize variable to hold page size as previously used variable has other function, so not always hols intended value required for previous link
* Adjust test to standards and use RestfulServerExtension instead of own server
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
2021-06-11 17:29:14 -04:00
8e807c1436
Bump jetty_version from 9.4.39.v20210325 to 9.4.42.v20210604 ( #2722 )
...
Bumps `jetty_version` from 9.4.39.v20210325 to 9.4.42.v20210604.
Updates `jetty-http` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-servlets` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-io` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-continuation` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `jetty-security` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-servlet` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-server` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-util` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-webapp` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-xml` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `websocket-api` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `websocket-client` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `websocket-server` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `jetty-maven-plugin` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
---
updated-dependencies:
- dependency-name: org.eclipse.jetty:jetty-http
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-servlets
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-io
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-continuation
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-security
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-servlet
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-server
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-util
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-webapp
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-xml
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty.websocket:websocket-api
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty.websocket:websocket-client
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty.websocket:websocket-server
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-maven-plugin
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-06-11 15:57:58 -04:00
090dc9a2e2
Docs
2021-06-11 15:55:35 -04:00
c4b96d6dc7
Bump jetty_version from 9.4.39.v20210325 to 9.4.42.v20210604 ( #2722 )
...
Bumps `jetty_version` from 9.4.39.v20210325 to 9.4.42.v20210604.
Updates `jetty-http` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-servlets` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-io` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-continuation` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `jetty-security` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-servlet` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-server` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-util` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-webapp` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `jetty-xml` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
Updates `websocket-api` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `websocket-client` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `websocket-server` from 9.4.39.v20210325 to 9.4.42.v20210604
Updates `jetty-maven-plugin` from 9.4.39.v20210325 to 9.4.42.v20210604
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.39.v20210325...jetty-9.4.42.v20210604 )
---
updated-dependencies:
- dependency-name: org.eclipse.jetty:jetty-http
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-servlets
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-io
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-continuation
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-security
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-servlet
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-server
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-util
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-webapp
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-xml
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty.websocket:websocket-api
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty.websocket:websocket-client
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty.websocket:websocket-server
dependency-type: direct:production
update-type: version-update:semver-patch
- dependency-name: org.eclipse.jetty:jetty-maven-plugin
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-06-11 15:54:48 -04:00
fcb32eacb6
Add support for loinc 2.70 ( #2721 )
...
* Add support for loinc 2.70
* Add changelog
2021-06-11 15:15:22 -04:00
3863e82a59
Fixed bug with choice children ( #2714 )
2021-06-08 08:24:13 -04:00
dc627dc019
Add bulk export authorization layer ( #2712 )
...
* Add bulk export authorization layer
* Add docs
* Version bump
* Authorize any
* Add bulk export - all
* Address lgtm issue
2021-06-06 20:47:43 -04:00
4f1f09abb1
Merge branch 'master' of github.com:hapifhir/hapi-fhir
2021-06-04 20:40:51 -04:00
3e4522be86
Add logging
2021-06-04 20:40:40 -04:00
0143e83156
Added another try-with-resources local variable based on a lgtm.com report. ( #2711 )
2021-06-04 15:17:27 -04:00
4f6c1eaedb
Add license header
2021-06-04 14:50:10 -04:00
899caa1913
Update transaction service visibility
2021-06-04 14:18:19 -04:00
62be623cf5
Add support for ICD-10-CM ( #2702 )
...
* Add support for ICD-10-CM
* Have this working
* Fix LGTM issues
* Test fix
2021-06-03 19:55:16 -04:00
94d6b15db9
_filter searchparam should not appear in cap stmt if disabled ( #2706 )
...
* issue reproduced and fixed
* changelog
* cleanup
2021-06-03 18:45:49 -04:00
c498522c78
search by source reported incorrect size ( #2705 )
...
* issue reproduced in test and fixed
* changelog
2021-06-03 18:19:43 -04:00
d574c4625b
Merge pull request #2704 from hapifhir/2703-@RequiresDocker-annotation-check-fails
...
Fix DockerRequiredCondition check.
2021-06-03 15:58:38 -04:00
473de64ddc
Fix DockerRequiredCondition check.
...
Add @RequiresDocker annotation to two tests.
2021-06-03 14:14:47 -04:00
73afed86d7
Merge pull request #2701 from hapifhir/1811-generalize-request-tracing
...
Expose tracing code for sharing.
2021-06-03 09:10:59 -04:00
4d6c35ac12
Hide constructor for static helper
2021-06-03 09:09:54 -04:00
80266a20a2
Pull request tracing out for sharing
2021-06-02 21:25:06 -04:00
jamesagnew
Nick Goupinets
Nick Goupinets
Josiah
Ken Stevens
Josiah
Kevin Dougan SmileCDR
jmarchionatto
dependabot[bot]
juan.marchionatto
michaelabuckley
Michael Buckley