105 Commits

Author SHA1 Message Date
ianmarshall
dd749791db Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
# Conflicts:
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-04-24 16:55:45 -04:00
ianmarshall
0e45db0ba9 More cleanup and test fixes. 2020-04-24 16:23:59 -04:00
jamesagnew
be5f8191dc One more bugfix 2020-04-22 09:08:46 -04:00
ianmarshall
4a89860f9b Additional tests and cleanup. 2020-04-17 17:38:42 -04:00
ianmarshall
d03ce6533e Fixed conflicts after merging latest from Master. 2020-04-13 20:01:34 -04:00
ianmarshall
925bbbbcdc Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
# Conflicts:
#	hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/RunServerCommand.java
#	hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/dstu3/BaseDstu3Config.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r4/BaseR4Config.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r5/BaseR5Config.java
#	pom.xml
2020-04-13 18:35:15 -04:00
ianmarshall
af11763dee Fixes to command line tool, clean-up and minor re-factoring. 2020-04-13 08:56:56 -04:00
jamesagnew
2205d2306c Move resource provider factory 2020-04-07 10:56:05 -04:00
jamesagnew
fef447afee Work on subscription cleanup 2020-04-04 16:07:01 -04:00
ianmarshall
83e673e725 Consolidate changes to Command Line Tool and add/improve tests. 2020-04-03 17:12:04 -04:00
jamesagnew
470063e8ab Subscription cleanup 2020-04-02 21:19:54 -04:00
jamesagnew
6baf1995c9 Work on subscription cleanup 2020-04-02 20:30:19 -04:00
ianmarshall
f819c91530 Initial implementation of lastn operation. 2020-03-31 21:55:57 -04:00
James Agnew
22413911bf
Validation api changes (#1719)
* Validation enhancements

* Work on validation api reworking

* Keep working on validation API

* Keep working on new term API

* Work on validation api

* Ongoing work on validation

* Work on integrating validation

* Work on validation API

* Add to validation API

* Work on validation

* Work on API

* Work on validation

* Work on validation API

* Work on validation API

* Work on validation api

* Work on validation API

* Work on validation api

* Validation API changes

* Work on API

* More work on validationo API

* Work on validation API

* FIxes

* WOrk on validation api

* Work on validation API

* Tests passing!

* More cleanup

* More validation API changes

* Fix intermittent test failure

* Package reorg

* Validation API work

* Work on doocumentation

* Work on API

* More work on new validation API

* Fix errorprone-reported error

* Test fixes

* Documentation updates

* Documentation tweaks

* Work on API

* Bean name adjustments

* Build fixes

* Some test fixes
2020-03-17 13:28:59 -04:00
jamesagnew
ddc7b601ee Version bump to 4.3.0-SNAPSHOT 2020-02-16 19:23:22 -05:00
jamesagnew
4fd80cfca7 Bump to 4.2.0 2020-02-16 19:00:15 -05:00
jamesagnew
9c7f5e1b9b License header updates 2020-01-12 10:15:08 -05:00
James Agnew
497a96ae68 Version bump for next round of development 2019-11-12 22:09:21 -05:00
jamesagnew
f99ad981b5 Version bump to 4.1.0 2019-11-12 16:08:20 -05:00
James Agnew
d3e66680f0 Add some testing 2019-10-30 09:49:40 -04:00
James Agnew
4a751cbfc5
Integrate Bulk Export (#1487)
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
2019-09-17 16:01:35 -04:00
Diederik Muylwyk
3218bd7853 Incremental work on large ValueSet expansion support; implemented paging when reading concepts from the terminology tables. Switched from Derby to H2. 2019-08-20 18:11:53 -04:00
Diederik Muylwyk
b84d6c7061 Fix deprecated references to versioned TerminologyUploaderProvider. 2019-08-19 10:28:05 -04:00
jamesagnew
e1b43d811f Version bump to 4.1.0-SNAPSHOT 2019-08-14 14:06:06 -04:00
jamesagnew
3f22456b0f Bump version to 4.0.0 2019-08-14 11:06:26 -04:00
James Agnew
0c9e5ec1ea
Support GraphQL for R3/4/5 (#1424)
* Work on grpahql enhanbcements

* Add some more chars to the sanitizer function

* Add changelog
2019-08-12 08:24:32 -04:00
James Agnew
af7de15b0f Add cascading deletes to CLI 2019-06-30 13:04:26 -04:00
James Agnew
10d969c514
Add Consent Service (#1359)
* Initial consent svc

* Ongoing consent svc work

* Add docs

* Ongoing consent service work

* Work on consent service

* More work on consent svc

* License header updates

* Ongoing consent svc work

* Some test fixes

* Some test fixes

* More work on consent svc

* Tests working

* Test fix

* Propagate RequestDetails to everything in JPA server

* More interceptor tweaks

* Fix compile error

* One more tweak to captured SQL

* Ongoing interceptor tweaks

* Ongoing interceptor tweaks

* More interceptor tweaks

* Interceptor tweaks

* Tweaks to tests

* Fix tests

* Test fix

* Raise warnings when encoding extensions with missing values

* Consent service work

* More interceptor tweaks

* Consent interceptor tweaks

* Add logging to test
2019-06-27 16:35:29 -04:00
jamesagnew
b72f1c4555 Roll back derby upgrade 2019-06-08 09:27:28 -04:00
James Agnew
517b68882c Fix derby dependencies for tests 2019-06-07 11:11:25 -04:00
James Agnew
50a8c66bf5 Version bump to 4.0.0-SNAPSHOT 2019-05-30 17:13:03 -04:00
jamesagnew
73aa53be8f Release 3.8.0 2019-05-30 16:50:04 -04:00
James Agnew
1277662872 One more fix to the CLI JPA project 2019-05-17 11:59:44 +02:00
James Agnew
202c798fcd Restore R4 server support in CLI 2019-05-16 11:56:34 +02:00
James Agnew
b6bf7cc2db Two more build failures 2019-04-24 22:00:18 -04:00
James Agnew
f3f5c570b1 A couple of compile glitches 2019-04-24 21:35:49 -04:00
James Agnew
738c2c1797
Interceptor framework refactoring (#1287)
Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
James Agnew
00a8f8c759 Fix broken build 2019-03-12 13:13:13 -04:00
James Agnew
48c10bddc5
Narrative Generator refactoring (#1219)
* Starting work on this

* Working on narrative templates

* Work on new narrative system

* Account for some failing tests due to refactoring of narrative mode

* Another test fix

* More test fixes

* One more test fix

* Work on searches

* Address review comments
2019-02-27 14:59:57 -05:00
James Agnew
0f8c8d18e2 Bump version to 3.8.0-SNAPSHOT 2019-02-06 20:02:28 -05:00
jamesagnew
207015c3af Version bump to 3.7.0 2019-02-05 21:36:38 -05:00
Ken Stevens
84a34eb3c9
Subscription module support (#1147)
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.

Moved Subscription registry out of interceptor and introduced SubscriptionLoader

* Created ActiveSubscription and moved cache bits into it

* Moved ExecutorQueue stuff out into its own class

* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour

* Added SubscriptionCheckingSubscriber

* Moved a few beans to @ComponentScan

* Replaced use of beanFactory with concrete factory classes

* Switched test to use subscribablechannel

* Added SubscriptionLoaderFhirClientTest

* Confirm that our SubscriptionProviderFhirClient works with a live fhir client

* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest

* Fix triggering service so it uses new subscriptionmatcherinterceptor

* Renamed "Database" classes to "Dao"

* processing -> matching naming change
2018-12-18 13:09:06 -05:00
Ken Stevens
6baee4dc3f
Standalone subscription (#1125) 2018-11-30 17:19:16 -05:00
jamesagnew
cc57bacab8 Version bump to 3.7.0-SNAPSHOT 2018-11-12 10:07:28 -05:00
James Agnew
63af04a7b4 Prepare for 3.6.0 release 2018-11-12 05:40:55 -05:00
James Agnew
706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
James Agnew
daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
James Agnew
f5d567cd00 Work on migrator 2018-09-08 03:30:35 +08:00
Diederik Muylwyk
0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
Diederik Muylwyk
2871920734 Preparing release. 2018-05-28 10:45:47 -04:00