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6138 Commits

Author SHA1 Message Date
jamesagnew e1142f4043 Start work on subscription cleanup 2020-04-02 05:31:12 -04:00
jamesagnew 08c1c28f67 Credit for #1786 2020-03-31 20:08:25 -04:00
Jafer Khan ce012ff7cf Add test case for invalid query parameters in read operation 2020-03-31 20:05:05 -04:00
Jafer Khan 0021561fb1 Raise an error on including invalid query string parameter(s) in read operations 2020-03-31 20:05:05 -04:00
jamesagnew 7f2605def1 Run migrator tests against DERBY and H2 2020-03-31 15:48:11 -04:00
jamesagnew 082c201333 Improve debug logging 2020-03-31 11:20:48 -04:00
jamesagnew 9d09466c21 Add debug logging to CLI 2020-03-31 10:49:16 -04:00
jamesagnew c4bd1a97fd Add test 2020-03-30 11:54:27 -04:00
James Agnew fe48313100
Add response size capturing interceptor (#1776) 
* Work on capturing repsonse sizes

* Interceptor complete

* Add changelog

* Test fix
 2020-03-30 11:24:10 -04:00
jamesagnew 97ac551c87 Dont fail on shrink only task 2020-03-26 19:53:17 -04:00
James Agnew b794618e9d
Avoid a crash encoding contained bundle (#1778) 
* Avoid a crash encoding contained bundle

* Add changelog

* Apply same fix to XML

* Fix typo
 2020-03-25 21:20:10 -04:00
jamesagnew 4b5165b5e2 Docs fix 2020-03-24 20:10:14 -04:00
James Agnew eaaddaf7ca
Fix #1763 - Include bundle type in summary=count responses (#1773) 
* Fix #1763 - Include bundle type in summary=count responses

* Test fix
 2020-03-24 16:24:41 -04:00
James Agnew c6d23a8bc6
Add chain on _type parameter (#1772) 
* Add chain on _type parameter

* Add changelog

* Test fix

* Address review comments

* Fix azure yaml

* Correct HTTPs in pom

* One more pom tweak

* Test fix

* Try azure again
 2020-03-24 09:44:57 -04:00
jamesagnew 1271d5cf4d One more azure tweak 2020-03-24 09:44:33 -04:00
jamesagnew 274a6cb7a1 Try azure again 2020-03-24 08:52:32 -04:00
jamesagnew 718c248c69 Test fix 2020-03-24 07:55:25 -04:00
jamesagnew bb4cbb6af5 One more pom tweak 2020-03-24 06:10:29 -04:00
jamesagnew 22e0c7a596 Correct HTTPs in pom 2020-03-24 06:09:03 -04:00
jamesagnew 31893be836 Fix azure yaml 2020-03-24 06:04:21 -04:00
jamesagnew 13f0e5384b Address review comments 2020-03-24 06:02:55 -04:00
jamesagnew fa29f3e8ab Credit for #1770 2020-03-23 19:12:05 -04:00
August Langhout 2c1ec8fb0d add test to check that json parsing also fails with identically named contained resources 2020-03-23 19:09:54 -04:00
August Langhout a9b6864988 remove first attempt to fix 2020-03-23 19:09:54 -04:00
August Langhout a75bf948c1 Remove personal data 2020-03-23 19:09:54 -04:00
August Langhout 2b23a6f2f0 Fix Xml parse issue: do not override the references with global contained resources if they have already been resolved 2020-03-23 19:09:54 -04:00
jamesagnew 300c4e66ba Fix broken test 2020-03-23 19:09:03 -04:00
jamesagnew a067a2001d Test fix 2020-03-23 18:53:16 -04:00
jamesagnew 7706600a8c Add changelog 2020-03-23 18:05:48 -04:00
jamesagnew 0ac434ea5d Add chain on _type parameter 2020-03-23 17:53:30 -04:00
jamesagnew 14316147c5 Resolve some docs issues 2020-03-23 10:34:12 -04:00
jamesagnew 3f20f7b67f Make SubscriptionDeliveryHandlerFactory not abstract 2020-03-22 21:01:19 -04:00
James Agnew f89661526c Missed noe rename in #1769 2020-03-22 13:27:04 -04:00
James Agnew c2ae5a8326
Add FHIRPath evaluation interceptor (#1769) 
* Add FHIRPath evaluation interceptor

* Add changelog
 2020-03-22 12:57:24 -04:00
James Agnew 75402e38f6
Merge pull request #1648 from jaferkhan/cleanup-docs-v2 
Fixed various typos and other minor issues in docs
 2020-03-21 18:16:39 -04:00
Jafer Khan b8b8248133 Merge branch 'master' of https://github.com/jaferkhan/hapi-fhir into cleanup-docs-v2 
# Conflicts:
#	hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/validation/profile_validator.md
 2020-03-22 02:25:11 +05:00
jamesagnew b3cf323e07 Add docs 2020-03-20 18:30:14 -04:00
jamesagnew a5257f0fa8 Add new indexing extractor method 2020-03-19 20:22:30 -04:00
Tadgh 27959614d8
Add basic stale.yml (#1764) 2020-03-19 17:21:22 -04:00
jamesagnew ecd2bcf492 Add a test utility 2020-03-18 17:34:48 -04:00
Tadgh 44ef5a4f6c
Merge pull request #1766 from jamesagnew/attribution-fix 
Add missed attribution to changelog
 2020-03-18 10:31:09 -07:00
Tadgh ad46c3173a Add missed attribution to changelog 2020-03-18 10:26:33 -07:00
jamesagnew 7bdb42d70f Restore accidentally removed method 2020-03-17 17:43:46 -04:00
James Agnew bde7c356fe
Implement Jackson parser/serializer (#1733) 
* [dev] Integration of a Jackson serializer and deserializer - first stage

* [fix] Fixed some serializing issues
[improve] Improved the processing, removed the loggers

* [clean] Removed the JacksonSerializer class, replaced all the Gson classes with Jackson classes

* [clean] Small cleanup

* [improve] Throw a ConfigurationException if the JsonGenerator cannot be created

* [improve] Use the ObjectMapper's `readTree` instead of `readValue`

* [dev] Latest fixes and improvements

* [dev] Use the Jackson serializer

* [clean] Removed the ObjectMapper configuration, for now

* [fix] Use the GsonStructure also for the parsing of a FHIR resource

* [clean] Removed the LinkedList usage

* Work on preparing for merge of #1673

* Resolve build errors

* Work on parser integration

* Tests passing

* Resolve fixme

* CLeanup

* Fix dependency

Co-authored-by: Bogdan Solga <bogdan.solga@gmail.com>
 2020-03-17 17:27:26 -04:00
Tadgh 4583cb9939
Merge pull request #1760 from jamesagnew/bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 
Bugfix/1752 support chained parameters inside reverse chained parameter
 2020-03-17 13:27:20 -07:00
jamesagnew 4c1bbd01cb Intermittent test fix 2020-03-17 14:19:36 -04:00
Tadgh 3eb09b15f0 Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 2020-03-17 10:32:43 -07:00
James Agnew 22413911bf
Validation api changes (#1719) 
* Validation enhancements

* Work on validation api reworking

* Keep working on validation API

* Keep working on new term API

* Work on validation api

* Ongoing work on validation

* Work on integrating validation

* Work on validation API

* Add to validation API

* Work on validation

* Work on API

* Work on validation

* Work on validation API

* Work on validation API

* Work on validation api

* Work on validation API

* Work on validation api

* Validation API changes

* Work on API

* More work on validationo API

* Work on validation API

* FIxes

* WOrk on validation api

* Work on validation API

* Tests passing!

* More cleanup

* More validation API changes

* Fix intermittent test failure

* Package reorg

* Validation API work

* Work on doocumentation

* Work on API

* More work on new validation API

* Fix errorprone-reported error

* Test fixes

* Documentation updates

* Documentation tweaks

* Work on API

* Bean name adjustments

* Build fixes

* Some test fixes
 2020-03-17 13:28:59 -04:00
James Agnew 9305bef4ef
Remove useless migrator task generics (#1687) 
* Remove useless migrator task generics

* Clean a couple of compile errors

* Try to fix intermittent
 2020-03-17 13:28:43 -04:00
Jens Kristian Villadsen 80139f4800
Update pom.xml (#1709) 
A run on master using https://jeremylong.github.io/DependencyCheck/dependency-check-maven/index.html shows quartz as having a critical security issue in version 2.3.1
 2020-03-17 12:47:12 -04:00