Commit Graph

4246 Commits

Author SHA1 Message Date
leif stawnyczy 3d7910415a merging together 2024-04-12 16:27:19 -04:00
leif stawnyczy 262c80ce5f updating migration script number 2024-04-12 13:24:15 -04:00
tyner 7cf197c875 Merge remote-tracking branch 'origin/5745-ready-state-batch2' into 5818-update-batch2-framework-with-gate_waiting-state 2024-04-12 11:08:06 -04:00
leif stawnyczy 441fd67bc7 Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step 2024-04-12 09:55:42 -04:00
leif stawnyczy e72016482f Merge branch 'master' into 5745-ready-state-batch2 2024-04-12 09:54:10 -04:00
Emre Dincturk 6e5c6fa33c
disabled old migration step that fails on fresh mssql db (#5841) 2024-04-11 15:50:04 -04:00
tyner 292a4d3858 resolved review comments 2024-04-11 15:03:24 -04:00
tyner decdeafdc1 resolved review comments 2024-04-10 16:59:52 -04:00
tyner fd4fdd7541 resolved review comments 2024-04-10 09:17:44 -04:00
tyner d06337d103 spotless 2024-04-10 08:32:28 -04:00
tyner 2518531417 - hid the over-powered transition function behind a proper state action 2024-04-10 08:31:27 -04:00
tyner 1a7e4d4401 Merge remote-tracking branch 'origin/5745-ready-state-batch2' into 5818-update-batch2-framework-with-gate_waiting-state
# Conflicts:
#	hapi-fhir-storage-batch2-test-utilities/src/main/java/ca/uhn/hapi/fhir/batch2/test/IJobMaintenanceActions.java
#	hapi-fhir-storage-batch2-test-utilities/src/main/java/ca/uhn/hapi/fhir/batch2/test/IWorkChunkCommon.java
#	hapi-fhir-storage-batch2-test-utilities/src/main/java/ca/uhn/hapi/fhir/batch2/test/IWorkChunkStateTransitions.java
#	hapi-fhir-storage-batch2-test-utilities/src/main/java/ca/uhn/hapi/fhir/batch2/test/IWorkChunkStorageTests.java
2024-04-09 14:30:44 -04:00
leif stawnyczy e483736f73 Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step 2024-04-08 16:03:10 -04:00
leif stawnyczy 8d84ed0b94 merging in masters 2024-04-08 15:46:33 -04:00
TipzCM 5d55594a73
Batch2 test refactor only (#5823)
* refactoring

* test refactor only

* spotless

* bumping version

---------

Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
2024-04-05 21:39:03 -04:00
Michael Buckley bdea4b6900
Merge history table prefetch with resource table. (#5825) 2024-04-04 23:53:35 +00:00
Michael Buckley fcf0a85584
Stop writing to hfj_forced_id (#5817)
Stop writing to hfj_forced_id
Stop reading ForcedId
Cleanup client-id assignment
Fix query counts in tests
Drop the unused indexes and fk
2024-04-03 18:25:23 +00:00
leif stawnyczy 571b4cb210 merging up 2024-04-03 14:08:05 -04:00
tyner 28be0b85d6 - Implemented GATE_WAITING state for the batch2 state machine.
- This will be the initial status for all workchunks of a gated job.
- made compatible with the equivalent "fake QUEUED" state in the Old batch2 implementation.
- Updated corresponding docs.
- added corresponding tests and changelog
2024-04-03 10:59:02 -04:00
tyner 6c5e1a118f Revert "- Implemented GATE_WAITING state for the batch2 state machine."
This reverts commit 32a00f4b81.
2024-04-03 10:47:18 -04:00
tyner 32a00f4b81 - Implemented GATE_WAITING state for the batch2 state machine.
- This will be the initial status for all workchunks of a gated job.
- made compatible with the equivalent "fake QUEUED" state in the Old batch2 implementation.
- Updated corresponding docs.
- added corresponding tests and changelog
2024-04-03 10:44:08 -04:00
JasonRoberts-smile 1736dadfcf
Jr 20240325 concept map unmatched codes (#5809)
* update model

* convert results

* migration

* extend test coverage in cli

* fix broken test

* change log

* code review feedback

* spotless
2024-04-02 16:46:03 -04:00
leif stawnyczy 74319a7b6d Merge branch 'master' into 5745-ready-state-batch2 2024-04-02 14:55:07 -04:00
leif stawnyczy e61f38eea9 spotless 2024-04-02 10:57:29 -04:00
leif stawnyczy 7f6d1aa9c7 review fixes round 2 2024-04-02 10:57:14 -04:00
Emre Dincturk 70843cdf45
fixed resource fullUrl in _history bundles (#5815) 2024-04-01 15:21:18 -04:00
leif stawnyczy da86cd1dd8 Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step 2024-04-01 11:14:21 -04:00
leif stawnyczy 2f7d2a4e07 review points round 1 2024-04-01 11:13:48 -04:00
Brenin Rhodes 9ddd8bf4d9
Update CR Operation Providers to latest version of CR release (#5751)
* Add support for latest version of CR and new $questionnaire operation

* Fix formatting in javadoc causing warning

* Update to 3.0.0 CR release

* Add support for expected parameter names from updated IG's

* Update Clinical Reasoning documentation

* Update pom.xml

* Create 5750-update-cr-operations.yaml

* fix doc

* Update to latest CR version

* Update pom.xml

* In version

* Update changelog

* Remove commented code
2024-03-28 11:44:29 -07:00
James Agnew 6175807f58
Reduce use of LOB columns (#5799)
* Reducer LOB usage in Batch2 and Search (#5748)

* Reducer LOB usage in Batch2 and Search

* Add changelog

* Rework a number of LOB columns

* Test fix

* Test fix

* Column fixes

* Test fix

* Formatting

* Fixes

* patching bad oracle test

* Apply spotless

---------

Co-authored-by: Tadgh <garygrantgraham@gmail.com>

* Clean up

* Revert change

* One more revert

* Resolve compile issue

---------

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2024-03-27 18:19:07 +00:00
leif stawnyczy 5a9b0f317b spotless 2024-03-26 13:20:48 -04:00
leif stawnyczy 75b53a7208 fixing path 2024-03-26 13:20:34 -04:00
leif stawnyczy e1474c8cd5 fixing bug 2024-03-26 09:16:11 -04:00
leif stawnyczy 4be7fa742f spotless 2024-03-25 21:32:16 -04:00
leif stawnyczy 6370124a7a more review fixes 2024-03-25 21:31:41 -04:00
leif stawnyczy 4a4be77351 review comments 1 2024-03-25 21:22:15 -04:00
leif stawnyczy b8a8781970 added documentation 2024-03-25 15:35:01 -04:00
leif stawnyczy 0288133d23 spotless 2024-03-25 15:31:01 -04:00
leif stawnyczy c8db3c82ad fixing tests 2024-03-25 11:40:17 -04:00
leif stawnyczy a0305e64bf some tweaks 2024-03-25 10:47:44 -04:00
leif stawnyczy db4ca99a3d review fixes 2024-03-25 10:36:55 -04:00
leif stawnyczy b23028ee06 merging up 2024-03-22 14:49:06 -04:00
leif stawnyczy 26d6714a68 waiting step 1 2024-03-22 14:29:20 -04:00
leif stawnyczy 4ea872b897 spotless 2024-03-22 13:58:07 -04:00
leif stawnyczy 7fb98340a8 adding different paging mechanism 2024-03-22 13:57:52 -04:00
leif stawnyczy a00296f9fd fixing some tests and adding a view 2024-03-21 16:40:25 -04:00
leif stawnyczy ccbd9afd98 spotless 2024-03-20 16:29:11 -04:00
leif stawnyczy 2037c01454 fixing tests 2024-03-20 16:23:56 -04:00
TynerGjs 4a726dd2d1
Resolve 5790 Prefix a unit test log for hibernate exception in HapiFhirHibernateJpaDialect (#5791)
* prefixed the log message with "Unit test: "

* resolved review comments
2024-03-20 13:36:21 -04:00
leif stawnyczy 3f6c2f984b basic state transition shell work 2024-03-19 14:22:47 -04:00