leif stawnyczy
e483736f73
Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step
2024-04-08 16:03:10 -04:00
leif stawnyczy
999d6efc25
fixing
2024-04-08 15:56:13 -04:00
leif stawnyczy
8d84ed0b94
merging in masters
2024-04-08 15:46:33 -04:00
TipzCM
107de2cfba
reduction step failing fails jobs ( #5831 )
...
* adding a catch for failing reduction step
* spotless
* added changelog
---------
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
2024-04-08 13:51:41 -04:00
Ken Stevens
eafa2aba29
move mdm interceptor registration ( #5830 )
...
* licenses
* remove mdm placeholder interceptor
* remove mdm placeholder interceptor
* fix regression
* Remove RTE Placeholder Interceptor.
Add tests to assert proper boot sequence.
* consolidate LogbackCaptureTestExtension (removed the cdr class)
* consolidate LogbackCaptureTestExtension (removed the cdr class)
2024-04-08 08:59:54 -07:00
TipzCM
5d55594a73
Batch2 test refactor only ( #5823 )
...
* refactoring
* test refactor only
* spotless
* bumping version
---------
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
2024-04-05 21:39:03 -04:00
TipzCM
620b46dd0a
unify bulk export patient type and bulk export patient instance ( #5822 )
...
* step one of unifying the bulk exports
* adding changelog
* review points
* spotless
---------
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
2024-04-05 19:03:16 +00:00
leif stawnyczy
a791510111
Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step
2024-04-05 14:27:33 -04:00
leif stawnyczy
419d2ae369
spotless
2024-04-05 11:26:33 -04:00
leif stawnyczy
97b00ebd97
fixing a bug
2024-04-05 11:26:16 -04:00
Ken Stevens
3a5ff47c58
Add CapabilityStatementFilterFactory to register filters that can modify the capability statement ( #5814 )
...
* added new customizer filter factory. have not yet deleted old code it replaces.
* added new customizer filter factory. have not yet deleted old code it replaces.
* replaced websocket filter. works. still some cleanup to do
* replaced websocket filter. works. still some cleanup to do
* cosmetic change
* add coverage and fix bugs it found
* spotless
* move capability statement classes
* add changelog and rename new classes
* review feedback
2024-04-05 01:24:05 +00:00
Michael Buckley
bdea4b6900
Merge history table prefetch with resource table. ( #5825 )
2024-04-04 23:53:35 +00:00
Michael Buckley
fcf0a85584
Stop writing to hfj_forced_id ( #5817 )
...
Stop writing to hfj_forced_id
Stop reading ForcedId
Cleanup client-id assignment
Fix query counts in tests
Drop the unused indexes and fk
2024-04-03 18:25:23 +00:00
leif stawnyczy
571b4cb210
merging up
2024-04-03 14:08:05 -04:00
tyner
6c5e1a118f
Revert "- Implemented GATE_WAITING state for the batch2 state machine."
...
This reverts commit 32a00f4b8169a11849611798adfd48138908e49c.
2024-04-03 10:47:18 -04:00
tyner
32a00f4b81
- Implemented GATE_WAITING state for the batch2 state machine.
...
- This will be the initial status for all workchunks of a gated job.
- made compatible with the equivalent "fake QUEUED" state in the Old batch2 implementation.
- Updated corresponding docs.
- added corresponding tests and changelog
2024-04-03 10:44:08 -04:00
JasonRoberts-smile
1736dadfcf
Jr 20240325 concept map unmatched codes ( #5809 )
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* update model
* convert results
* migration
* extend test coverage in cli
* fix broken test
* change log
* code review feedback
* spotless
2024-04-02 16:46:03 -04:00
Lila Mikalson
e39ee7f47d
Add _language param to providers ( #5801 )
...
* Add _language param to providers and tests
* add pr number to docs
* fix test
* remove unnecessary code
---------
Co-authored-by: Lila Mikalson <lila.mikalson@smilecdr.com>
2024-04-02 20:26:33 +00:00
leif stawnyczy
74319a7b6d
Merge branch 'master' into 5745-ready-state-batch2
2024-04-02 14:55:07 -04:00
leif stawnyczy
e61f38eea9
spotless
2024-04-02 10:57:29 -04:00
leif stawnyczy
7f6d1aa9c7
review fixes round 2
2024-04-02 10:57:14 -04:00
Emre Dincturk
70843cdf45
fixed resource fullUrl in _history bundles ( #5815 )
2024-04-01 15:21:18 -04:00
leif stawnyczy
ba67d6fa82
Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step
2024-04-01 11:16:33 -04:00
leif stawnyczy
439d24376d
updating diag
2024-04-01 11:16:16 -04:00
leif stawnyczy
eb852e06d6
revert
2024-04-01 11:16:03 -04:00
leif stawnyczy
da86cd1dd8
Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step
2024-04-01 11:14:21 -04:00
leif stawnyczy
2f7d2a4e07
review points round 1
2024-04-01 11:13:48 -04:00
leif stawnyczy
c8b33881f0
update state diagram
2024-04-01 11:13:34 -04:00
James Agnew
6ce3b17460
Enforce maximum chunk size in bulk export ( #5800 )
...
* Limit bulk export chunk size
* Cleanup
* Work on tests
* Working
* Add some docs
* Address revuew comments
* Spotless
* Test fix
2024-04-01 09:28:46 -04:00
Nathan Doef
9e5db198bf
Fix BaseOutcomeReturningMethodBinding NullPointer ( #5808 )
...
* failing test
* fix
* add @Nullable
2024-03-28 16:18:27 -04:00
Brenin Rhodes
9ddd8bf4d9
Update CR Operation Providers to latest version of CR release ( #5751 )
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* Add support for latest version of CR and new $questionnaire operation
* Fix formatting in javadoc causing warning
* Update to 3.0.0 CR release
* Add support for expected parameter names from updated IG's
* Update Clinical Reasoning documentation
* Update pom.xml
* Create 5750-update-cr-operations.yaml
* fix doc
* Update to latest CR version
* Update pom.xml
* In version
* Update changelog
* Remove commented code
2024-03-28 11:44:29 -07:00
James Agnew
6175807f58
Reduce use of LOB columns ( #5799 )
...
* Reducer LOB usage in Batch2 and Search (#5748 )
* Reducer LOB usage in Batch2 and Search
* Add changelog
* Rework a number of LOB columns
* Test fix
* Test fix
* Column fixes
* Test fix
* Formatting
* Fixes
* patching bad oracle test
* Apply spotless
---------
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* Clean up
* Revert change
* One more revert
* Resolve compile issue
---------
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2024-03-27 18:19:07 +00:00
Etienne Poirier
2f9693a1e4
MDM expansion doesn't work when using the :mdm qualifier in query string ( #5803 )
...
* wip
* cleaning up test
* adding changelog and passing spotless.
---------
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
2024-03-27 10:12:50 -04:00
Tadgh
4d4d8b25d4
CVE 2024 03 26 ( #5804 )
...
* CVE-2024-1597
* CVE-2024-22243
2024-03-26 14:58:16 -07:00
leif stawnyczy
5a9b0f317b
spotless
2024-03-26 13:20:48 -04:00
leif stawnyczy
75b53a7208
fixing path
2024-03-26 13:20:34 -04:00
leif stawnyczy
e1474c8cd5
fixing bug
2024-03-26 09:16:11 -04:00
leif stawnyczy
4be7fa742f
spotless
2024-03-25 21:32:16 -04:00
leif stawnyczy
6370124a7a
more review fixes
2024-03-25 21:31:41 -04:00
leif stawnyczy
4a4be77351
review comments 1
2024-03-25 21:22:15 -04:00
leif stawnyczy
b8a8781970
added documentation
2024-03-25 15:35:01 -04:00
leif stawnyczy
0288133d23
spotless
2024-03-25 15:31:01 -04:00
leif stawnyczy
bde9947283
updating documentation and adding change log
2024-03-25 15:30:27 -04:00
leif stawnyczy
c8db3c82ad
fixing tests
2024-03-25 11:40:17 -04:00
leif stawnyczy
a0305e64bf
some tweaks
2024-03-25 10:47:44 -04:00
leif stawnyczy
6ac3c73234
spotless
2024-03-25 10:37:19 -04:00
leif stawnyczy
db4ca99a3d
review fixes
2024-03-25 10:36:55 -04:00
leif stawnyczy
708a737e5f
remove text
2024-03-22 15:00:24 -04:00
leif stawnyczy
ad44f37e55
Merge branch '5745-ready-state-batch2' into 5767-add-poll-waiting-step
2024-03-22 14:52:48 -04:00
leif stawnyczy
b23028ee06
merging up
2024-03-22 14:49:06 -04:00
