67d363f9e1
Add setting to allow validation of reference targets ( #1932 )
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* Add setting to allow validation of reference targets
* Add changelog
* Add changelog
* License headers
* Plugin version bump
* Experiment with Maven build
2020-06-23 11:35:10 -04:00
e849ff2cbc
Merge pull request #1933 from jamesagnew/dm-20200622-fix-valueset-expand-with-offset-and-count
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Fix ValueSet$expand with offset and count parameters.
2020-06-22 18:30:22 -04:00
ce0cb8916e
Improve tests.
2020-06-22 17:22:21 -04:00
ced376f7ba
Add changelog entry; fix typo.
2020-06-22 17:02:08 -04:00
314df43091
BaseValidationSupportWrapper.expandValueSet(...) and ValidationSupportChain.expandValueSet(...) were incorrectly replacing expansion options (i.e. offset and count) with null.
2020-06-22 16:52:52 -04:00
5bf1e94a23
Fix to accomodate MySQL and MariaDB.
2020-06-19 17:26:45 -04:00
0e86732599
Add changelog
2020-06-19 14:03:22 -07:00
46c00f4efb
Update for Loinc 2.68 ( #1917 )
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* Work on loinc updates
* Work on loinc upload
* Clean up CLI config
* Add changelog
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/TerminologyUploaderProviderR4Test.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincUploadPropertiesEnum.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologyLoaderSvcLoincTest.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Clean up imports
* LOINC fixes
* Loinc loader fixes
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
2020-06-18 16:55:11 -04:00
4119cbb0c4
Terser should create correct Enumeration on create
2020-06-17 18:32:27 -04:00
abf0a0053d
Merge pull request #1928 from jamesagnew/im_20200615_mysql_migration_syntax
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Im 20200615 mysql migration syntax
2020-06-17 14:21:17 -04:00
b6540064ea
Improve TX scoping for validation ( #1925 )
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* Improve TX scoping for validation
* Test fix
* Test fix
* Some cleanup
* Test fixes
* Test fix
2020-06-17 14:04:12 -04:00
5b120ee71e
Removed unused code and import statement.
2020-06-17 11:57:37 -04:00
5d22af45bf
Added tests for cases where a renamed column is used in a Foreign Key constraint.
2020-06-17 11:56:20 -04:00
eb990e9a68
Enhance added JUnit test.
2020-06-17 09:05:53 -04:00
cc7ed1b036
Cleanup JUnit test.
2020-06-16 17:21:17 -04:00
2d857f484c
Fix broken JUnit.
2020-06-16 17:13:00 -04:00
0bd8084b5e
Additional fixes to migration tasks for MySQL.
2020-06-16 16:05:10 -04:00
d32ad74402
some renaming
2020-06-15 21:49:34 -07:00
9222fa3f59
change transaction call
2020-06-15 15:17:25 -07:00
eccd280d71
Fix test error
2020-06-15 11:24:39 -07:00
798fdb9cc2
Merge branch 'master' into spring-batch-integration
2020-06-15 09:10:41 -07:00
0d4e12fe58
Undo accidentally committed file with a weird name
2020-06-15 09:17:52 -04:00
34c68e15af
Add license headers
2020-06-14 19:10:36 -04:00
d164e2d450
Empi 28 matchers ( #1918 )
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* adding matchers
* reorganize resource matching api
* added precision sensitive date matcher
* stricter rules validation
* validate thresholds
* validate paths. with FIXMES
* validate searchparams
* fix merge compile error
* add soundex, validate no duplicate names
* add normalize substring
* add exact field to matcher
* EXACT -> STRING, exact=true
* cleanup test method
* match test passes with fixmes
* fixed vector matching
* fixed vector matching
* updating documentation and fixing tests
* updated rules documentation with latest matchers
* updated rules documentation with latest matchers
* created eid page
* eid documentation
* pre-review cleanup
* clean up beans
* disentangling beans
* checkstyle
* noop to trigger CI
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_rules.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2020-06-14 17:15:56 -04:00
db4b749436
License updates
2020-06-14 15:44:33 -04:00
ac0d8c0fe1
Test fixes
2020-06-14 15:32:50 -04:00
4270636d43
Merge branch 'master' into spring-batch-integration
2020-06-12 16:20:54 -07:00
928aafba1e
Rename bean
2020-06-12 16:18:04 -07:00
0f469c1a56
Rework to allow for job creation inside of batch
2020-06-12 14:20:50 -07:00
622659cbb3
Add type parameter to resource reindexing operation ( #1921 )
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* Add type parameter to resource reindexing operation
* Add changelog
* CLean up reindexing
2020-06-12 16:51:18 -04:00
4f45c2c25d
Merge pull request #1920 from jamesagnew/im_20200611_mysql_rename
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Enable rename table column migration task for MySQL.
2020-06-12 13:04:54 -04:00
1ed65f2e03
Enable rename table column migration task for MySQL.
2020-06-12 09:01:46 -04:00
756602183b
Add changelog for https://github.com/hapifhir/org.hl7.fhir.core/pull/237
2020-06-11 14:03:20 -04:00
a9c704c06e
Merge branch 'master' into spring-batch-integration
2020-06-10 12:24:19 -07:00
4e42a59ad4
Add licenses
2020-06-10 11:52:45 -07:00
d698ad7180
Code review comments
2020-06-10 10:46:28 -07:00
d521dc61cc
Package fix
2020-06-10 11:59:37 -04:00
7d6f8fe612
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-06-10 09:57:24 -04:00
05df4f0827
Migration task updates
2020-06-10 09:56:49 -04:00
0c100f1aca
Test fixes
2020-06-10 08:09:10 -04:00
b8da4f0140
Add package support ( #1911 )
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* Begin rework of package management
* Work on NPM
* Work on package management
* Work on NPM
* NPM rework
* Work on NPM
* NPM package rework
* Updates
* Updates
* Add license
* Work on package server
* Work on package importing
* Work on package management
* Package rework
* Work on packages
* Work on package manager
* Work on pkgs
* NPM work
* NPM rework
* Work on package cache
* Work on NPM
* Work on NPM
* Package fixes
* Add tests
* Tweaks
* Test fixes
* Add changelog
* Avoid snapshot dep
2020-06-10 05:30:20 -04:00
0d3ad622b5
Correct Validation Performance Regression ( #1895 )
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* Validation performance regression
* Optimize validation
* More cleanup
* Add changelog
* Test fixes
* Build fixes
2020-06-10 05:26:21 -04:00
6e43c5348c
Add missing imports from import reorganization
2020-06-09 19:27:16 -07:00
6fc5b753e5
Readding imports
2020-06-09 19:20:43 -07:00
c36e1d2899
More code review comments
2020-06-09 19:18:06 -07:00
942fc313ec
Code review comments
2020-06-09 19:00:41 -07:00
d90987368a
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/bulk/job/JobExistsParameterValidator.java
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Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-06-09 16:29:15 -07:00
b7cea688f6
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/bulk/job/JobExistsParameterValidator.java
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Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-06-09 15:52:37 -07:00
7fdd0f1753
Merge remote-tracking branch 'remotes/origin/master' into spring-batch-integration
2020-06-09 15:52:54 -04:00
57f2002b84
organize imports
2020-06-09 15:49:11 -04:00
James Agnew
Diederik Muylwyk
ianmarshall
Tadgh
IanMMarshall
Ken Stevens
Tadgh