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212 Commits

Author SHA1 Message Date
James Agnew
1fd99dac63
Enable optional cascading deletes on JPA server (#1363) 
* Start working on cascading deleets

* WOrk on cascading deletes

* Work on cascading deletes

* Enable cascading deletes

* Cascade deletes almost working

* FIx test

* Test fix
 2019-06-28 17:32:39 -04:00
James Agnew
cb8634f26f
Ja interceptor callback fix (#1308) 
* Interceptor callback fix

* Ensure that interceptor methods are called after a transaction
 2019-05-14 18:47:11 -04:00
jamesagnew
f5732d321d Enable websockets on the public server 2019-05-04 18:24:08 -04:00
James Agnew
9353ea5b06 Enable websockets on public HAPI server 2019-05-04 10:06:10 -04:00
James Agnew
8c7f065440 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-04-29 14:49:56 -04:00
James Agnew
37b9e1a42c Improve validation of enableWhen questionnaires 2019-04-29 14:43:42 -04:00
Ken Stevens
0feb3f5932 register subscription interceptors on uhn test server 2019-04-29 14:38:58 -04:00
Ken Stevens
381f422e98 enable subscriptions 2019-04-29 09:58:17 -04:00
Ken Stevens
130e879d04
Delete performance (#1286) 
* move expunge out

* move to prototype

* turns parameters into fields

* cleanup control flow

* moved transactions outside of loops

* add expungeeverything

* moved daos out

* add expungeThreadCount

* add expungeBatchSize

* added partition runner to run in separate threads

* all done.  just need to consolidate test code.

* Moar tests

* consolidated pointcutlatch into hapi-fhir-jpaserver-model

* final cleanup

* update javadoc

* change log

* failing test

* added delete
also @Transactional

* remove unused parameter

* fix compile

* race condition

(cherry picked from commit e1940d2fb20838859a205f2b96c833b0ce9f05eb)

# Conflicts:
#	hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/expunge/PartitionRunnerTest.java

* ja feedback

* ja feedback
 2019-04-25 15:38:37 -04:00
James Agnew
738c2c1797
Interceptor framework refactoring (#1287) 
Interceptor framework overhaul
 2019-04-24 14:32:30 -04:00
James Agnew
a8c76450e5 Re-enable contains searches on the public HAPI FHIR server and improve 
message formatting in HapiLocalizer
 2019-03-14 13:19:26 -04:00
James Agnew
00a8f8c759 Fix broken build 2019-03-12 13:13:13 -04:00
James Agnew
48c10bddc5
Narrative Generator refactoring (#1219) 
* Starting work on this

* Working on narrative templates

* Work on new narrative system

* Account for some failing tests due to refactoring of narrative mode

* Another test fix

* More test fixes

* One more test fix

* Work on searches

* Address review comments
 2019-02-27 14:59:57 -05:00
James Agnew
e401ec86e4
Enhanced elements (#1192) 
Squashed merge: Add elements exclude mode

* Start working on elements enhancement

* Work on elements projection

* Work on elements filter

* Feature is now working

* Just some cleanup

* Address compile issues
 2019-02-03 16:41:33 -05:00
James Agnew
415ed80522 Get public HAPI FHIR server building again 2019-01-09 15:04:58 -05:00
James Agnew
d091665ab6 Test fix 2019-01-09 14:40:43 -05:00
Ken Stevens
84a34eb3c9
Subscription module support (#1147) 
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.

Moved Subscription registry out of interceptor and introduced SubscriptionLoader

* Created ActiveSubscription and moved cache bits into it

* Moved ExecutorQueue stuff out into its own class

* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour

* Added SubscriptionCheckingSubscriber

* Moved a few beans to @ComponentScan

* Replaced use of beanFactory with concrete factory classes

* Switched test to use subscribablechannel

* Added SubscriptionLoaderFhirClientTest

* Confirm that our SubscriptionProviderFhirClient works with a live fhir client

* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest

* Fix triggering service so it uses new subscriptionmatcherinterceptor

* Renamed "Database" classes to "Dao"

* processing -> matching naming change
 2018-12-18 13:09:06 -05:00
Ken Stevens
6baee4dc3f
Standalone subscription (#1125) 2018-11-30 17:19:16 -05:00
James Agnew
b41c222880 Require explicit declaration of authorizationinterceptor operation rules 
on whether the response is authorized or not
 2018-11-23 14:25:46 -05:00
James Agnew
1de0ef405c Clean up test compile and reenable GraphQL on hapi.fhir.org 2018-11-16 11:15:44 +01:00
James Agnew
5d5ee78873 API cleanup following JPA search performance enhancements 2018-10-03 07:43:01 -04:00
James Agnew
3e445faf47 Squashed commit of the following: 
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sat Sep 29 13:47:22 2018 -0400

    Shrink validation resources

commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 22:45:28 2018 -0400

    Updates to get R4 working

commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 09:02:13 2018 -0400

    Ongoing work on gettign R4 working

commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 05:21:01 2018 -0400

    More work on sync

commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:29 2018 -0400

    Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4

commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:19 2018 -0400

    Fix compile error

commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:04:23 2018 -0400

    Merge branch 'master' into sync_r4

commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:01:42 2018 -0400

    Keep working on getting R4 building

commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Sep 25 13:11:27 2018 -0400

    Ongoing work to get R4 working

commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 08:15:36 2018 -0400

    Work on getting build working

commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 05:16:53 2018 -0400

    Merge branch 'master' into sync_r4

commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Sep 17 05:30:39 2018 -0400

    Work on R4 sync

commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Sep 16 10:19:00 2018 -0400

    Work on sync

commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 17:28:28 2018 -0400

    Work on R$ sync

commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 08:33:07 2018 -0400

    Work on R4
 2018-09-29 13:48:35 -04:00
jamesagnew
5d60b90b81 Update refererence server to avoid long calls 2018-09-17 08:29:47 -04:00
James Agnew
2f2900e837 Improve indexing on JPA server in anticipation of a new indexing 
strategy in HAPI FHIR 3.5.0
 2018-05-23 08:09:57 -04:00
jamesagnew
7e83fc78cf Disable user resource and weaken validation on the public server 2018-05-21 19:04:37 -04:00
jamesagnew
e8139192e0 FIx test issues 2018-05-21 13:07:11 -04:00
jamesagnew
aa2d278520 Update vonk address 2018-05-16 21:46:09 -04:00
jamesagnew
4d62120a18 Fix issues reported by errorprone 2018-05-15 08:44:15 -04:00
James Agnew
f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
Diederik Muylwyk
d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923) 
The ConceptMap operation $translate has been implemented.
 2018-05-10 10:52:56 -04:00
jamesagnew
9013e44ba0 Fix a couple of broken compile issues 2018-03-31 06:08:49 -04:00
jamesagnew
673a3d6272 Bump to JDK8 2018-03-30 08:54:04 -04:00
jamesagnew
53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew
4ba56d5021 Reorganize the OSGI projects a bit 2018-03-28 06:15:28 -04:00
jamesagnew
e5903f79f0 A bit of test cleanup 2018-03-23 07:15:22 -04:00
James Agnew
45a16fe066 More loinc work 2018-03-22 07:16:16 -04:00
James Agnew
6359f7f8a1 More work on loinc 2018-03-19 08:51:02 -04:00
James Agnew
e52f582769 An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR. 2018-01-29 12:10:05 -06:00
James Agnew
4dcce4e582 Fix #832 - Correctly normalize text with Korean characters 2018-01-21 14:55:14 +08:00
James Agnew
f58a03dacf Add some tests 2018-01-11 09:26:28 -05:00
jamesagnew
ae9ab6c109 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-12-04 22:35:43 -05:00
jamesagnew
4de1f2cd90 Point test server at hapi.fhir.org 2017-12-04 22:35:24 -05:00
James Agnew
6afe6804db Fix #796 - Correctly escape spaces in generated URLs 2017-11-25 17:52:12 -05:00
jamesagnew
aaed0c5876 Add some logging 2017-11-13 21:02:39 -05:00
James Agnew
49f4ac4fc5
Merge branch 'master' into analyzer-def-using-search-mapping 2017-11-13 13:32:40 -05:00
James Agnew
7c1ab11b02 Clean up places where CORS headers are declared - Related to #718 2017-10-30 16:37:47 -04:00
James
d461567433 Allow cache-control to be used with CORS 2017-10-26 09:08:10 -04:00
James
0959156a4a Faster processing for mandatory count searches 2017-10-17 14:11:05 -04:00
James Agnew
290894557d Optionally require JPA server to collect count information even for 
large searches
 2017-10-13 06:31:37 -04:00
Jiajing LIANG
86fb1de3ae rename file 2017-10-09 18:34:49 +02:00