Commit Graph

882 Commits

Author SHA1 Message Date
James Agnew 2c722e64c2
Add support for including qualified star syntax (#2672)
* Add support for including qualified star syntax

* Add changelog

* Add docs

* Build fix
2021-05-23 16:50:37 -04:00
jamesagnew ff2698d4d1 Merge branch 'rel_5_4' 2021-05-19 09:22:11 -04:00
jamesagnew 994f09e125 Version bump 2021-05-18 21:05:50 -04:00
jamesagnew de56f440cb Version bump 2021-05-18 17:14:14 -04:00
James Agnew b31bb945ad
Add include clause to MSSQL forcedid table index (#2659)
* Add include clause to MSSQL forcedid table index

* Add changelog

* Test fix

* Bump MSSQL version
2021-05-16 19:14:51 -04:00
jamesagnew 2068372998 Version bump 2021-05-07 17:43:54 -04:00
jamesagnew 63c4b22cd3 Undo bump 2021-05-07 17:42:50 -04:00
jamesagnew 17e41520a4 Version bump 2021-05-07 17:41:39 -04:00
dependabot[bot] 9e61136c2d
Bump greenmail from 1.5.11 to 1.6.3 (#2626)
Bumps [greenmail](https://github.com/greenmail-mail-test/greenmail) from 1.5.11 to 1.6.3.
- [Release notes](https://github.com/greenmail-mail-test/greenmail/releases)
- [Commits](https://github.com/greenmail-mail-test/greenmail/compare/release-1.5.11...release-1.6.3)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-05-03 17:31:03 -04:00
dependabot[bot] 91fa23b11a
Bump fhir_core_version from 5.3.10 to 5.3.11 (#2625)
Bumps `fhir_core_version` from 5.3.10 to 5.3.11.

Updates `org.hl7.fhir.utilities` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.convertors` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.validation` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.dstu2` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.dstu2016may` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.dstu3` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.r4` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.r4` from 5.3.10 to 5.3.11

Updates `org.hl7.fhir.r5` from 5.3.10 to 5.3.11

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2021-05-03 07:58:55 -04:00
jamesagnew 5db01f3139 Build fixes 2021-05-03 05:57:45 -04:00
James Agnew 593230f6bf
Fix openapi redirect (#2624)
* Fix redirect for openapi

* FIx deps
2021-05-03 05:32:34 -04:00
James Agnew 0cea403800
Fix vulnerability warning on maven plugin (#2621)
* Fix vulnerability warning on maven plugin

* Compile fixes

* Fix bootstrap dep

* Test fix

* Fix tests

* FIx deps
2021-05-02 12:14:32 -04:00
James Agnew 970a9884f0
Avoid tag definition constraint (#2620)
* Avoid tag definition constraint failure

* Version bumps

* Add changelog

* Avoid guava issue

* Test fix

* Test fix

* Bump pom
2021-05-01 17:16:15 -04:00
James Agnew 292b350f2c
Bump Junit for to avoid OWASP flag (#2618) 2021-04-30 14:39:16 -04:00
Tadgh 983d811af6
Merge pull request #2587 from hapifhir/issue-2585-enhance-placeholder-targets-logic
Issue 2585 enhance placeholder targets logic
2021-04-30 12:55:27 -04:00
Tadgh 78271a2931 Create tests for all possiblye use cases 2021-04-29 15:25:11 -04:00
Kevin Dougan SmileCDR 646faa10e1
2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.10 (#2545)
* 2540 - Upgraded the fhir_core_version from 5.3.0 to 5.3.9.

* 2540 - Updated the Unit Test messages due to the upgraded dependencies.

* 2540 - Fixed some additional Unit Test message checks.

* 2540 - Updated the POM to refer to fhir_core_version 5.3.10-SNAPSHOT so a FULL Pipeline Build can run to verify that everything is fixed now.

* 2540 - Added some DEBUG Sysout logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Added some more logging to try and determine why the Pipeline Builds fail for a specific Unit Test when it passes locally...

* 2540 - Updated a Unit Test to account for a newly returned search param.

* 2540 - Updated a Unit Test to account for a newly returned search param and removed some debug output.
2021-04-29 15:00:37 -04:00
JP 239d2496ea
CQL hardening and Dstu3 unit tests (#2450)
* WIP for elm caching

* Bug fixes and a working DSTU3 unit test

* More tests, Address review feedback, add initial docs

* Update to cql-evaluator 1.2.0

* Fixes for documentation
2021-04-29 14:52:13 -04:00
James Agnew 95d7ba6fa8
Streamline Search SQLs (#2576)
* Streamline SQL queries

* SQL query tidying

* Add changelog

* Test fixes

* Tests passing

* Ongoing work

* Test fixes

* Test fixes

* Build fix

* Cleanup

* Fixes
2021-04-28 10:29:09 -04:00
jamesagnew 1d054054c7 Test fixes 2021-04-27 07:03:24 -04:00
jamesagnew 987264b271 Version bump JENA 2021-04-25 17:38:04 -04:00
James Agnew 2ba1005762
OpenAPI Support (#2560)
* Start work on OpenAPI

* Fixes

* Work on OpenAPI

* Cleanup

* Cleanup

* More swagger work

* Build fix

* More work

* More work

* Add documentation

* Docs fixes

* Add changelog

* License updates

* Add API

* Cleanup

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_plain/openapi.md

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>

* Work on scripts

* Add docs

* Compile fix

* Work on fixes

* Fix tests

* Test fix

* Test fix

* Build fix

* Tests

* Build fix

* Work on pipeline

* Version bump

* Test fix

* Version bump

* Test fix attempts

* Test fix

* Test fix

* Remove accidentally committed files

* Fixes

* Tets fixes

* Test fix

* Test fix

* Test fix

* Test fixes

* Test fixes

* Test fixes

* License header updates

* test fix

* Test fixes

* Test fix

* Test fixes

* Test fix

* Checkstyle bump

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>
2021-04-25 15:40:50 -04:00
Nick Goupinets 4e266462ec Bumped up version due to breaking changes 2021-04-20 16:17:27 -04:00
dependabot[bot] d94611edf6
Bump junit_version from 5.7.0 to 5.7.1 (#2554)
Bumps `junit_version` from 5.7.0 to 5.7.1.

Updates `junit-jupiter` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

Updates `junit-jupiter-api` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

Updates `junit-jupiter-engine` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

Updates `junit-jupiter-params` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

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2021-04-15 08:23:30 -04:00
dependabot[bot] 05b1323638
Bump jarchivelib from 1.0.0 to 1.1.0 (#2553)
Bumps [jarchivelib](https://github.com/thrau/jarchivelib) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/thrau/jarchivelib/releases)
- [Commits](https://github.com/thrau/jarchivelib/compare/v1.0.0...v1.1.0)

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2021-04-15 08:21:33 -04:00
dependabot[bot] 9a67f3ee0c
Bump spring_boot_version from 2.4.1 to 2.4.4 (#2550)
Bumps `spring_boot_version` from 2.4.1 to 2.4.4.

Updates `spring-boot-starter-test` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-test` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-maven-plugin` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-dependencies` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-autoconfigure` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-configuration-processor` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Signed-off-by: dependabot[bot] <support@github.com>

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2021-04-14 20:09:37 -04:00
James Agnew ca2088f3ad
Add framework for Bulk Import (#2538)
* Start work on bul;k import

* Work on bulk import

* Have batch working

* Working

* Working

* More work

* More work on bulk export

* Address fixmes

* License header updates

* Test fixes

* License header updates

* Test fix

* Test fix

* Version bumps

* Work on config

* Test cleanup

* One more version bump

* Version bump

* CLeanup

* A few additions

* Test fixes

* Test fix

* Test fix

* Migration fix

* Test fix

* Test fix
2021-04-14 17:41:32 -04:00
jamesagnew 7cf061d76b Jetty version bump 2021-04-06 21:15:11 -04:00
James Agnew a6cbf7eebd
Add support for hierarchycal valueset expansion (#2525)
* Add support for hierarchycal valueset expansion

* Add changelog

* Add tests

* Cleanup

* Test fix

* Test fixes
2021-04-06 17:36:54 -04:00
James Agnew b617c7690d
Search Parameter Infrastructure Cleanup (#2522)
* Search param service cleanup

* Work on collapsing search param

* Search param cleanup

* Work on build

* Test fix

* Test fixes

* Ongoing work

* Test fix

* Compile fix

* Test fixes

* Test fix

* Test fix

* License header updates

* Remove fixme

* Cleanup

* Cleanup
2021-04-05 17:40:10 -04:00
jamesagnew 8759cdae00 Additional cleanup 2021-03-30 08:20:14 -04:00
Diederik Muylwyk b720c32c1d Version bump 2021-03-29 18:23:16 -04:00
James Agnew dc41d5ad61
Add terminology mapping and display population interceptors (#2488)
* Start work on code mapping interceptors

* Work on generation

* Add terminology mapping and display population interceptors

* Add changelog

* License header updates

* Test fixes

* Fix typo

* Interceptor fixes

* License header update

* Test fixes

* Mapping fixes

* Version bump

* License header updates

* Add null tests

* Add null guard

* Intermittent fix
2021-03-21 12:03:57 -04:00
James Agnew 807d9d53f0
Improve performance for large transactions (#2462)
* Performance tweaks

* Work on processing speed

* Disable no longer relevant tests

* Work on performance

* Work on tests

* Work on large transaction performance

* Add changelog

* Perf tweaks

* Test fixes

* Resolve FIXME

* Fixes

* Test cleanup

* Fix broken changelog entry
2021-03-09 18:16:02 -05:00
Diederik Muylwyk 11ee6dedd3 Address CVE-2020-27223; bumped minor version of Jetty in root POM 2021-03-06 16:33:05 -05:00
James Agnew b108e43600
Allow partition date for non-partitionable resources (#2407)
* Allow partition date for searchparam resources

* Cleanup

* Test fix

* Documentation update

* Docs tweak
2021-02-22 20:49:09 -05:00
James Agnew 3eda19c65a
Version bump (#2400)
* Version bump

* Docs changes

* Docs tweaks

* Docs tweak

* Spelling fixes

* Docs tweaks
2021-02-18 11:07:49 -05:00
jamesagnew 919c1dbddc Version bump to 5.3.0 2021-02-17 07:10:13 -05:00
jamesagnew 028ef1b088 Credit for #2365 2021-02-08 09:15:04 -05:00
jamesagnew da847ad08a Credit for #2282 2021-02-07 12:32:41 -05:00
dependabot[bot] 703f7b2e65
Bump mariadb-java-client from 2.5.1 to 2.7.2 (#2334)
Bumps [mariadb-java-client](https://github.com/mariadb-corporation/mariadb-connector-j) from 2.5.1 to 2.7.2.
- [Release notes](https://github.com/mariadb-corporation/mariadb-connector-j/releases)
- [Changelog](https://github.com/mariadb-corporation/mariadb-connector-j/blob/master/CHANGELOG.md)
- [Commits](https://github.com/mariadb-corporation/mariadb-connector-j/compare/2.5.1...2.7.2)

Signed-off-by: dependabot[bot] <support@github.com>

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2021-02-06 17:34:26 -05:00
Kevin Dougan SmileCDR cfc5b87e3e
Removed an old comment from the root pom. (#2359) 2021-02-04 15:21:39 -05:00
JP 222bb7a8c0
Update to release versions of cql components (#2357) 2021-02-04 15:00:03 -05:00
James Agnew e195bdc065
Try to avoid codecov fluctuations (#2344)
* Try to avoid codecov fluctuations

* Less slowdown

* Another build tweak

* Build tweak

* Container bump

* Another build attempt

* One more test
2021-02-03 09:44:57 -05:00
jamesagnew c0142a67b1 Credit for #2340 2021-02-02 14:27:42 -05:00
jamesagnew d65ed820a5 Javadoc build fix 2021-02-01 12:13:47 -05:00
Kevin Dougan SmileCDR 2308d8f44b
Merge CQL Initial Implementation Into master (#2330)
* CQL initial implementation
2021-01-29 16:35:38 -05:00
jamesagnew 589eb3158e Credit for #2310 2021-01-29 11:02:51 -05:00
James Agnew 909d9f742c
Enable Auto-reference versions in JPA (#2323)
* Automatic reference versions

* Auto reference versions

* resolve fixmes

* Add changelog

* Test fixes

* Test fixes

* Resolve fixmes

* Work on versioning

* Add support for _includes

* Update headers

* Change visibility

* One more tweak

* One more API tweak

* Fixes

* Account for review comments

* Fix errorprone reported issue

* Test fix

* Test fixes

* Test fixes
2021-01-27 14:49:10 -05:00