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2254 Commits

Author SHA1 Message Date
Diederik Muylwyk
5f17fb30b4 Address review comments. 2019-09-26 20:15:55 -04:00
Ken Stevens
07286e3b3f Merge remote-tracking branch 'remotes/origin/master' into ks-subscription-delivery-queue-configurable-name 2019-09-26 17:50:14 -04:00
James Agnew
ed78a5f06d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-26 16:56:42 -04:00
James Agnew
77d15a1836
Fix failing tests due to race conditions 
* Work on failing tests

* Temporary downgrade of fhir core

* Work on failing build

* Fix pom

* Don't upload codecov

* Restore codecov

* Restore all tests

* Keep hammering away at intermittent test failures

* More test fixes

* Keep chipping away at these...

* Add some extra checks

* Work on tests

* More test logging

* More logging

* This might be it!

* Final build fixes?

* Address some review comments

* A couple more corrections
 2019-09-26 16:11:15 -04:00
Ken Stevens
392d7ab000 Extend SubscribableChannel with SubscribableChannelManagement so we can get a handler count so we know when to destroy a channel 2019-09-26 15:46:40 -04:00
James Agnew
cc0df9850c Make sure the validator can get at codes defined in notpresent 
codesystems
 2019-09-26 14:44:09 -04:00
James Agnew
94f87e7282 Allow term service to return codes 2019-09-26 12:46:41 -04:00
Diederik Muylwyk
b6400764c4 Removed scratch notes. 2019-09-26 11:42:26 -04:00
Diederik Muylwyk
efae77a330 Added changelog entries. 2019-09-26 11:36:55 -04:00
Diederik Muylwyk
a4f9894104 Merging master into working branch. 2019-09-26 10:41:34 -04:00
Diederik Muylwyk
e098cea07f Throw UnsupportedOperationException for LOINC ancestor filter with IN operator; ignore tests. See #1512 in GitHub. 2019-09-26 10:39:55 -04:00
James Agnew
ddb5605830 Improve test logging 2019-09-25 22:17:47 -04:00
Diederik Muylwyk
4f7db37d8e Additional progress for ancestor/descendant filters; only ancestor/in remains. 2019-09-25 21:36:36 -04:00
James Agnew
99787d14f1 Add some test logging 2019-09-25 21:20:36 -04:00
James Agnew
8657afb01e
Fix intermittent test failures regarding search (#1509) 
* Add some logging

* Add more test logging

* Work on some test logging

* Fix compile error

* Work on codecov

* Work on codecov

* Remove test debug messages
 2019-09-25 20:15:21 -04:00
Diederik Muylwyk
7c5cf9f1f4 Incremental progress for ancestor/descendant filters. 2019-09-25 17:33:45 -04:00
Diederik Muylwyk
9b4671c05e Added a bunch of tests for ancestor/descendant filters. 2019-09-25 16:52:08 -04:00
Diederik Muylwyk
729d3a3d3b Fix intermittent test failure. 2019-09-25 15:32:39 -04:00
James Agnew
4570e50c03 Fix nullability on one column 2019-09-25 15:31:26 -04:00
James Agnew
cddaf058a2 Add some extra test logging 2019-09-25 15:27:17 -04:00
Diederik Muylwyk
30588bf8ee Completed fixing tests after enabling pre-expansion by default. 2019-09-25 14:29:50 -04:00
jamesagnew
b2c13f3018 Work on codecov integration 2019-09-25 13:25:59 -04:00
Diederik Muylwyk
6b22d705c7 Incremental progress fixing tests after enabling pre-expansion by default. 2019-09-25 13:24:50 -04:00
jamesagnew
2efef13528 Another test fix 2019-09-25 05:43:58 -04:00
jamesagnew
4c064186a9 Try to fix intermittent testfailure 2019-09-25 05:39:00 -04:00
Diederik Muylwyk
799848291f Merging master into working branch. 2019-09-24 16:47:19 -04:00
Diederik Muylwyk
5743efa066 Minor tweak to test. 2019-09-24 16:46:05 -04:00
James Agnew
21b91ac0e7 Make sure we call the updateEntity method on the correct DAO type when 
processing inside a transaction
 2019-09-24 16:16:13 -04:00
Diederik Muylwyk
bf5d6acef4 More troubleshooting. 2019-09-24 15:36:06 -04:00
Diederik Muylwyk
46a6b7aaef Troubleshooting lack of ValueSet pre-expansion when updating a ValueSet via transaction bundle. 2019-09-24 15:30:40 -04:00
James Agnew
bd763d728b Merge branch 'master' into ks-source-request-id-append-bug 2019-09-24 14:49:39 -04:00
James Agnew
5f563057c0
Set up CI with Azure Pipelines (#1502) 
* Set up CI with Azure Pipelines

[skip ci]

* Update azure-pipelines.yml for Azure Pipelines

* Skip tests for a build

* Work on pipeline

* Update azure-pipelines.yml for Azure Pipelines

* Interceptors docs

* Test fix

* Disable releases from snapshot repo

* Try disabling jitpack

* Fix dependency issue

* A couple of test fixes

* Change to trigger a build

* Force a change to trigger a build

* Force a build

* FIx test
 2019-09-24 14:38:38 -04:00
Ken Stevens
0e90867a65 fixed meta.source request append bug 2019-09-24 14:35:34 -04:00
James Agnew
9b2826f3c6
Handle searches with chained slash value (#1503) 
* Work on test case for bug with searches

* Work on tests

* Fix issue with slashes in reference chain parameter for JPA server
 2019-09-24 14:31:05 -04:00
Diederik Muylwyk
df4b6c798c Modified LOINC Terms to RadLex RPIDs ID and URL; pattern is mappings of main LOINC terms to say 'loinc' but parts and other codes are specified. 2019-09-24 09:21:42 -04:00
Diederik Muylwyk
2a2e8e0ab8
Merge pull request #1501 from jamesagnew/1483-need-consistent-assignment-of-fullurl-id-and-url-for-loinc 
Fixed inconsistent IDs and URLs for LOINC.
 2019-09-23 15:59:21 -04:00
James Agnew
6f44d7c360
Fix issue deleting CodeSystem resources (#1316) 
* Fix deleting CodeSystem resources

* Test fixes

* Address review comments
 2019-09-23 15:58:57 -04:00
James Agnew
004f42cdcc Clean up docs 2019-09-23 15:56:02 -04:00
Diederik Muylwyk
59d7ccb99e Fixed inconsistent IDs and URLs for LOING. 2019-09-23 15:49:58 -04:00
Diederik Muylwyk
56e2904029 Removing my name. Whoops! 2019-09-20 18:48:47 -04:00
Diederik Muylwyk
0cc35699b8 Specify full path for LOINC filenames to avoid duplicates. 2019-09-20 18:43:38 -04:00
Diederik Muylwyk
e1e8ec981b Replaced migration task column length constants with literals because they are not necessarily constant across schema versions. 2019-09-20 12:31:54 -04:00
jamesagnew
6475146bc9 Add license headers 2019-09-19 18:08:21 -04:00
James Agnew
eddb98084d Move PreferReturnEnum back to original location to avoid regressions 2019-09-19 15:48:58 -04:00
James Agnew
6fde2879ef Fix one more intermittent test 2019-09-19 14:53:29 -04:00
James Agnew
47805bceff Test fixes 2019-09-19 14:42:27 -04:00
James Agnew
a5a0fca065 Test fixes 2019-09-19 11:33:33 -04:00
James Agnew
2be63a1650 Test fixes 2019-09-19 09:45:07 -04:00
jamesagnew
170698562a Bump to current org.hl7.fhir.core 2019-09-19 08:11:30 -04:00
James Agnew
30dfde645b Upgrade to Fontawesdome 5 and prevent uploading resources with binary 
storage extensions
 2019-09-19 05:28:05 -04:00