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330 Commits

Author SHA1 Message Date
jamesagnew c73da4d989 Fix SIL-A's name 2020-09-03 14:17:37 -04:00
James Agnew c6777578a8
Avoid DB binary storage deadlock (#2062) 
* Avoid DB binary storage deadlock

* Add changelog

* Rework
 2020-09-01 09:52:38 -04:00
James Agnew 437e81fc65
Support multiple updates of one resource in a transaction (#2050) 
* Support multiple updates of one resource in a transaction

* Test update

* Add changelog

* Test fix
 2020-08-25 05:55:54 -04:00
jamesagnew 969a20d9e8 Credit for #2049 2020-08-22 17:01:37 -04:00
James Agnew dbbff1fd16
Allow HTTP 204 response to transaction (#2051) 
* Allow HTTP 204 response to transaction

* Add changelog

* Test fix
 2020-08-21 21:00:55 -04:00
James Agnew 03cde8c53f
Don't use remote termsvc on implied system validation (#2045) 
* Don't use remote termsvc on implied system validation

* Add changelog
 2020-08-18 13:56:37 -04:00
James Agnew 1fadaeeff5
Reject nvalid SearchParameter wiith no path expression (#2043) 
* Fix some changelog typos

* Reject SearchParameter with invalid path

* Add changelog

* Test fix

* Test fixes

* Test fixes

* Test fix

* One more test fix
 2020-08-17 11:21:55 -04:00
James Agnew eab828f47a
Add transactionbuilder (#2041) 
* Add transactionbuilder

* Add changelog

* Add creates
 2020-08-17 07:47:40 -04:00
jamesagnew 3a5e0ed872 Fix #2042 - Outdated CI link on website 2020-08-16 21:03:27 -04:00
jamesagnew ad12ee4a5c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-08-16 21:03:13 -04:00
jamesagnew cd65c298fe Fix some changelog typos 2020-08-16 09:01:42 -04:00
jamesagnew a3951b551f Add release details for 5.1.0 2020-08-13 17:36:04 -04:00
jamesagnew 89f68353ee Add changelog 2020-08-13 05:47:56 -04:00
jamesagnew 92718c7ef2 Version bump to 5.2.0-SNAPSHOT 2020-08-12 10:23:46 -04:00
jamesagnew 5fb7bd5156 Version bump to 5.1.0 2020-08-11 17:43:24 -04:00
Ken Stevens aed97ad1cb
added EMPI change log (#2036) 2020-08-11 15:33:33 -04:00
Jens Kristian Villadsen 39eea88b47
Update interceptors.md (#2033) 
Added the mention of public requirement!
 2020-08-11 05:25:36 -04:00
James Agnew e61b39fc30
Force a flush of the SearchParameter cache sooner when SPs change (#2030) 
* Force a flush of the SearchParameter cache sooner when SPs change

* Add changelog

* Test fixes
 2020-08-09 19:30:59 -04:00
James Agnew 8f6d08dd58
Fix #2022 - Invalidate caches on expunge (#2029) 
* Fix #2022 - Invalidate caches on expunge

* Rename changelog file
 2020-08-09 14:14:28 -04:00
James Agnew 8e0023c385
Disable referential integrity for some paths (#2025) 
* Disable referential integrity for some paths

* Add changelog

* Remove unneeded file
 2020-08-09 07:09:37 -04:00
James Agnew 0de0b88aa0
Fix TestpageOverlay XSS Vulnerability (#2027) 
* Resolve XSS vulnerability

* Add changelog
 2020-08-09 07:06:11 -04:00
James Agnew 63ef2ce006
Fix #2012 - Always filter total from search results when consent interceptor in use (#2020) 
* consent bug test

* Fix #2012 - Always filter total from search results when consent
interceptor in use

* Add changelog

* Address coverage issues

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
Co-authored-by: jvi <jvi@trifork.com>
 2020-08-07 09:16:02 -04:00
Tadgh 6cb39a14ea
Empi doc updates (#2021) 
* Update documentation about EMPI automatic linking

* Further documentation updates
 2020-08-06 16:45:04 -04:00
Tadgh 3b9f9e6cc3 Rename operation 2020-08-03 21:35:12 -07:00
Tadgh 0ef1665061 Merge branch 'batch-empi-job' of github.com:jamesagnew/hapi-fhir into batch-empi-job 2020-08-01 11:48:27 -07:00
Tadgh 8b378995b2 Doc updates 2020-08-01 11:45:47 -07:00
Tadgh 4c64cec8fa
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:40:24 -07:00
Tadgh 9c5b69bb6e
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:37:11 -07:00
Tadgh dfecca33bc
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:32:30 -07:00
Tadgh 7299162f10 Update doc phrasing 2020-08-01 11:31:28 -07:00
Tadgh bd22b0239f Add caveat 2020-07-31 09:13:38 -07:00
Gary Graham 9f0af3c21c docs for batch run 2020-07-30 19:25:30 -07:00
Tadgh f731e44303 Partial addition of docs for batch run 2020-07-30 18:21:35 -07:00
Tadgh 07f9e8466b Add documentation for -clear 2020-07-30 15:23:43 -07:00
Tadgh 8b4fa8048f Add changelog 2020-07-30 14:42:25 -07:00
Tadgh 0e88f359f5 Merge remote-tracking branch 'remotes/origin/master' into batch-empi-job 2020-07-29 09:42:12 -07:00
James Agnew 3098affccb
Update path when updating resource links (#2007) 
* fix resource link index reuse bug

* Resolve merge conflicts

Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-07-28 21:40:56 -04:00
James Agnew 6a8e09addf
Ensure that parent structuredefinitions are snapshotted before (#2005) 
* Ensure that parent structuredefinitions are snapshotted before
snapshotting child

* Add changelog
 2020-07-28 11:46:58 -04:00
Tadgh 82dcc395ec Merge branch 'master' into batch-empi-job 2020-07-27 14:59:27 -07:00
James Agnew 3a7ac0debc
Correct invalid decimal numbers stored in DB (#2003) 
* Correct invalid decimal numbers stored in DB

* Add changelog
 2020-07-27 13:33:27 -04:00
michelgleeson 4e66cb6752
Merge pull request #1994 from jamesagnew/fix_mssql_errors 
Fix mssql errors
 2020-07-24 11:26:23 -04:00
jamesagnew 296ed963cc Fix sentence fragment 2020-07-23 12:57:46 -04:00
Mike G 7b435d6052 changelog for mssql changers 2020-07-23 12:16:11 -04:00
Tadgh bbe6d5600e Address review comments 2020-07-22 11:58:08 -07:00
Ken Stevens 160778d3fd
Empi docs (#1989) 
* Remove lines from image edges.  Thanks Max!

* fix case 4 docs
only mark possible match as eid if it was via an eid match
 2020-07-21 13:07:49 -04:00
jamesagnew 4c4d46008b Credit for #1848 2020-07-21 05:40:41 -04:00
jamesagnew c13e17b4e6 Add changelog and bump Jetty 2020-07-17 11:50:45 -04:00
Ken Stevens ebd6ca4b64
Empi 3 ruleset version (#1978) 
* add rule version

* add rule version

* Rough in model for Golden Record.

* Test Link Rule Version

* add eid match boolean

* added new fields to EmpiLink to provide more information about how the link was created

* add logging to check an edge case

* all tests pass

* wip with failing tests

* tests pass

* FIXME

* optimize imports

* test score in provider output

* FIXME

* FIXME

* Fix jpa test app context

* fix migration string length

* review feedback param name

* review feedback javadoc

* review feedback javadoc

* bean config reorganization for cdr

* add more tests
 2020-07-17 08:31:15 -04:00
jamesagnew 49c08f31d8 Credit for #1896 2020-07-16 09:26:41 -04:00
James Agnew 077ee02771
Fix validation for enumerated ValueSets (#1982) 
* Allow code validation against enumerated VS

* Work on validation

* Work on this

* Work on tests

* Work on validation

* Work on tests

* Work on validation

* Test fixes

* Add changelog

* For a change

* Test fixes
 2020-07-15 13:38:14 -04:00