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187 Commits

Author SHA1 Message Date
Nick Goupinets 6ea58f74d1 Code review 2021-08-23 10:55:09 -04:00
Nick Goupinets 8670f107b5 Updated link expansion 2021-08-17 13:17:44 -04:00
Nick Goupinets 4cfe11a221 Merge branch 'master' into 2849_add_new_mdm_param 2021-08-16 13:33:57 -04:00
Tadgh d5fe1eeef7 Move test out of IT 2021-08-09 16:13:47 -04:00
Nick Goupinets 891a6304d0 WIP 2021-08-04 11:06:14 -04:00
Nick Goupinets 0d34fe61c8 Adding tests 2021-07-30 11:17:56 -04:00
Nick Goupinets a2aa2ca1c3 2849 Added new parameter to MDM processing 2021-07-29 15:52:27 -04:00
James Agnew 6d37749be8
Add non unique combo search params (#2809) 
* Start work on nonunique combo search params

* Work on SQL

* Version bump

* A fix

* Test fixes

* Fixes

* Undo version bump

* Test fixes

* Resolve fixme
 2021-07-21 19:14:14 -04:00
Tadgh a4fb72975d
Merge pull request #2767 from hapifhir/2765-mdm-paging 
Paging implementation for MDM query links operation
 2021-07-01 23:16:47 -04:00
Tadgh cfcc939caa Fix broken tests, add license 2021-07-01 18:28:29 -04:00
Tadgh 86519a892a Add tests for link builder 2021-07-01 09:43:53 -04:00
Tadgh b963520c98 Fix bug in link builder 2021-07-01 09:33:19 -04:00
Tadgh 0893ba0039 Fix up operation param types, fix bug in link builder 2021-06-30 23:17:04 -04:00
Tadgh 1eb82d633d Rip out pagingprovider requirement 2021-06-30 18:41:18 -04:00
Tadgh 950096d42f remove demand for paging provider 2021-06-30 18:21:08 -04:00
Tadgh 9f3b262d6d Add alternate caller methods 2021-06-30 17:54:09 -04:00
Tadgh d407501071 More docs 2021-06-30 15:04:05 -04:00
Tadgh 883337a9f4 Tidying 2021-06-30 14:55:57 -04:00
Michael Buckley fa750d209e $mdm-submit operation was only submitting 100 resources and then stopping. 
It now correctly submits all requested resources.
 2021-06-30 14:48:28 -04:00
Tadgh 8f3cbb0a7f Refactor docs 2021-06-30 14:48:13 -04:00
Tadgh 61260dd1b1 Slightly more portable solution for paging 2021-06-30 11:54:59 -04:00
Tadgh a770d577cb Initial quick implementation of paging with tests 2021-06-29 17:46:03 -04:00
Nick Goupinets 5c9f2617da Code review 2021-06-22 15:23:03 -04:00
Nick Goupinets 95012623f6 Added null checks 2021-06-22 15:12:10 -04:00
Ken Stevens 32ac16e2aa
add a limit to mdm candidate searches (#2742) 
* done

* verbal review feedback

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2739-max-mdm-matches.yaml

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* review feedback

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-06-18 20:48:34 -04:00
Nick Goupinets dc89a4abd7 Updated identifier matcher to only match on non-empty values 2021-05-26 15:13:43 -04:00
Tadgh ac7c684437 Refactor to support all new tests 2021-04-29 17:01:19 -04:00
Nick Goupinets 1f10a15c35 Merge branch 'master' into 2515_MDM_survivorship_rules 2021-04-19 17:33:53 -04:00
jamesagnew b294f7d208 License headers 2021-04-14 18:00:52 -04:00
Ken Stevens 550602b2f1
added numeric matcher (#2547) 
* added numeric matcher

* changelog

* performance optimization

* fix test
 2021-04-14 13:15:30 -04:00
James Agnew b617c7690d
Search Parameter Infrastructure Cleanup (#2522) 
* Search param service cleanup

* Work on collapsing search param

* Search param cleanup

* Work on build

* Test fix

* Test fixes

* Ongoing work

* Test fix

* Compile fix

* Test fixes

* Test fix

* Test fix

* License header updates

* Remove fixme

* Cleanup

* Cleanup
 2021-04-05 17:40:10 -04:00
Nick Goupinets ab8505dfc4 Removed deprecated TerserUtil 2021-03-31 16:07:21 -04:00
jamesagnew 4feda13d7f License header update 2021-03-30 06:02:32 -04:00
Nick Goupinets 7a9514b94a Initial fix 2021-03-29 20:43:43 -04:00
Nick Goupinets 644885e91a Fixed typo in the docs 2021-03-25 18:32:08 -04:00
long caaa040def removed identifierSystem from extensionMatcher and removed related test 2021-03-23 13:21:32 -06:00
long 6c41ded507 fixed based on pull request comments, added tests 2021-03-18 13:59:07 -06:00
long 989e9e7903 refactored terserUtil, added equals function in ExtensionUtil 2021-03-17 13:02:59 -06:00
long 660777f855 Merge branch 'master' of https://github.com/hapifhir/hapi-fhir into 2478_add_extension_mdm_matcher 2021-03-17 10:01:56 -06:00
long 55f49b1b65 changed rules json from resourcePath to fhirPath 2021-03-16 14:28:24 -06:00
long 9d9e0d5429 added extension mdm matcher 2021-03-16 12:07:42 -06:00
Nick Goupinets b5da1068a2 Removed CDR from the text literal 2021-03-10 15:32:48 -05:00
Nick Goupinets ccb5b1aaad Addresses #2449 2021-03-08 17:40:16 -05:00
Tadgh 57c7d4f3eb Support MDM expansion in group bulk export, re-add capability to use _typeFilter in Bulk Export 2021-03-03 15:02:41 -05:00
Tadgh b2b0462154
Skip loading a FHIRPath object if we are older than STU3 (#2416) 
* Skip loading a FHIRPath object if we are older than STU3

* Change log level
 2021-02-23 18:04:53 -05:00
Tadgh 04b36d9e0a Readd forgotten file 2021-02-22 18:47:34 -05:00
Tadgh 0bcf421fb2 add forgotten files 2021-02-22 18:32:27 -05:00
Tadgh 18b61f21d0 re-add only relevant code 2021-02-22 18:23:03 -05:00
Tadgh 96b4e5ab38
Merge pull request #2324 from hapifhir/single-threading-mdm 
Ensure Single threading mdm
 2021-01-29 10:01:56 -05:00
Tadgh c572575412 Remove mutator 2021-01-25 09:55:31 -05:00
Nick 10382c4915 Added a few more tests 2021-01-22 16:46:18 -05:00
Nick d783229406 updated docs 2021-01-22 13:28:24 -05:00
Nick cdda12ef8e Added empty matcher 2021-01-21 17:42:28 -05:00
Nick f8c1591d21 post CDR review fixes 2021-01-20 16:44:48 -05:00
Nick f10785ed43 Code review updates 2021-01-15 14:07:14 -05:00
Nick 6cc40b134e Pre-review commit 2021-01-14 20:35:09 -05:00
Nick 759f06ce48 Added optional manual override to link update 2021-01-14 14:24:59 -05:00
Nick 8a5651093b Renamed method param 2021-01-14 11:16:17 -05:00
Nick 6781718702 Survivorship 7 2021-01-12 19:08:54 -05:00
Nick 5aa85c7e17 Survivorship 6 2021-01-11 17:22:06 -05:00
Nick 9338a4e73e Survivorship 5 2021-01-08 19:25:25 -05:00
Nick bec056cf9d Survivorship 4 2021-01-07 17:36:04 -05:00
Nick 19341a17b7 Survivorship 3 2021-01-06 18:02:04 -05:00
Nick a4a173d5c7 Survivorship 2 2021-01-05 17:59:26 -05:00
Nick f4cf4bf54a Survivorship 2021-01-04 17:09:31 -05:00
jamesagnew d20b07c78e Update license headers 2021-01-01 15:50:24 -05:00
jamesagnew f30999b053 License header updates 2021-01-01 15:07:23 -05:00
Tadgh e79114e2ec
Un-revert the MDM changes, now that issues have been addressed (#2226) 
* Backward compatibility changes

* Revert "Revert "Remove all references to Person from EMPI.""

* Updated docs

* Removed mdm channel references

* Initial implementation

* fix coarseness bug. Fix tests. reinitialize silly bean

* Add forgotten json file

* Generic provider PoC

* Refactored provider to use BundleBuilder

* Removed version-specific MDM providers

* Addressed code review comments

* Fixed after merge

* Fixed docs

* MDM SVG for Update Use Cases

* Removed obsolete docs

Co-authored-by: Nick <nick.goupinets@smilecdr.com>
Co-authored-by: Nick Goupinets <73255752+nvg-smile@users.noreply.github.com>
 2020-12-17 10:12:53 -05:00
Tadgh 0938d72b51
Revert "Remove all references to Person from EMPI." 2020-12-09 14:57:00 -05:00
Nick b3a9ab20dc Updated wording assertion in exception tracing 2020-12-08 19:05:21 -05:00
Nick 4b610801fa Added header 2020-12-08 16:47:19 -05:00
Nick 4c7b597983 Addressed more code review comments 2020-12-08 15:32:01 -05:00
Nick fd90eb699f Review updates 2020-12-07 18:03:56 -05:00
Nick 51b3fb0525 Synced Provider impl bw R4 and Dstu3 2020-12-04 11:57:40 -05:00
Nick 5c40afb0c9 Updated doc headers 2020-12-03 16:11:10 -05:00
Nick 4352e0a61f Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-03 11:28:21 -05:00
Nick Goupinets ffee7a894f Removed person refs 2020-12-02 17:41:42 -05:00
Nick Goupinets db28a94eee Resolved alerts 2020-11-30 09:09:38 -05:00
Nick Goupinets da3df49089 Fixed build failures 2020-11-27 18:00:24 -05:00
Nick Goupinets c64ca81373 Removed obsolete tests 2020-11-27 17:11:52 -05:00
Nick Goupinets 36ce84335a Renamed sourceResource to goldenResource 2020-11-27 16:53:21 -05:00
Nick Goupinets 8a7dc4e80b EMPI to MDM 2020-11-27 15:12:21 -05:00
Nick Goupinets 03643a7b3c Fix for bean scope inconsistenices 2020-11-25 17:37:37 -05:00
Tadgh 3ad0fa8fda Merge branch 'gg_20201105-remove-person-references' of github.com:jamesagnew/hapi-fhir into gg_20201105-remove-person-references 2020-11-19 14:23:50 -05:00
Tadgh f11f8a38ac Add licenses 2020-11-19 14:23:47 -05:00
Nick Goupinets b44ae49dd2 Removed hardcoded references to the supported MDM types 2020-11-19 13:37:45 -05:00
Tadgh 3209faf2fb Rename package and module 2020-11-18 21:55:29 -05:00