Compare commits

...

3 Commits

Author SHA1 Message Date
Primož Delopst 4bb4bcaf05
Merge a6dea96fb5 into 6bb72e445d 2024-09-29 18:44:42 +02:00
volodymyr-korzh 6bb72e445d
HapiSchemaMigrationTest intermittent failure fix (#6329) 2024-09-27 16:59:19 -06:00
Primož Delopst a6dea96fb5 Fix primary key migration in case multiple schemas on the same database 2024-09-16 19:26:16 +02:00
6 changed files with 136 additions and 103 deletions

View File

@ -20,6 +20,7 @@
package ca.uhn.fhir.jpa.embedded;
import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
import ca.uhn.fhir.jpa.util.DatabaseSupportUtil;
import ca.uhn.fhir.test.utilities.docker.DockerRequiredCondition;
import ca.uhn.fhir.util.VersionEnum;
import org.junit.jupiter.api.extension.AfterAllCallback;
@ -54,7 +55,7 @@ public class HapiEmbeddedDatabasesExtension implements AfterAllCallback {
myEmbeddedDatabases.add(new H2EmbeddedDatabase());
myEmbeddedDatabases.add(new PostgresEmbeddedDatabase());
myEmbeddedDatabases.add(new MsSqlEmbeddedDatabase());
if (OracleCondition.canUseOracle()) {
if (DatabaseSupportUtil.canUseOracle()) {
myEmbeddedDatabases.add(new OracleEmbeddedDatabase());
} else {
String message =
@ -136,7 +137,7 @@ public class HapiEmbeddedDatabasesExtension implements AfterAllCallback {
arguments.add(Arguments.of(DriverTypeEnum.POSTGRES_9_4));
arguments.add(Arguments.of(DriverTypeEnum.MSSQL_2012));
if (OracleCondition.canUseOracle()) {
if (DatabaseSupportUtil.canUseOracle()) {
arguments.add(Arguments.of(DriverTypeEnum.ORACLE_12C));
}

View File

@ -20,6 +20,7 @@
package ca.uhn.fhir.jpa.embedded;
import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
import ca.uhn.fhir.jpa.util.DatabaseSupportUtil;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.testcontainers.containers.MSSQLServerContainer;
@ -43,9 +44,19 @@ public class MsSqlEmbeddedDatabase extends JpaEmbeddedDatabase {
private final MSSQLServerContainer myContainer;
public MsSqlEmbeddedDatabase() {
DockerImageName msSqlImage = DockerImageName.parse("mcr.microsoft.com/azure-sql-edge:latest")
.asCompatibleSubstituteFor("mcr.microsoft.com/mssql/server");
myContainer = new MSSQLServerContainer(msSqlImage).acceptLicense();
// azure-sql-edge docker image does not support kernel 6.7+
// as a result, mssql container fails to start most of the time
// mssql/server:2019 image support kernel 6.7+, so use it for amd64 architecture
// See: https://github.com/microsoft/mssql-docker/issues/868
if (DatabaseSupportUtil.canUseMsSql2019()) {
myContainer = new MSSQLServerContainer("mcr.microsoft.com/mssql/server:2019-latest").acceptLicense();
} else {
DockerImageName msSqlImage = DockerImageName.parse("mcr.microsoft.com/azure-sql-edge:latest")
.asCompatibleSubstituteFor("mcr.microsoft.com/mssql/server");
myContainer = new MSSQLServerContainer(msSqlImage).acceptLicense();
}
myContainer.start();
super.initialize(
DriverTypeEnum.MSSQL_2012,

View File

@ -19,8 +19,7 @@
*/
package ca.uhn.fhir.jpa.embedded;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.SystemUtils;
import ca.uhn.fhir.jpa.util.DatabaseSupportUtil;
import org.junit.jupiter.api.extension.ConditionEvaluationResult;
import org.junit.jupiter.api.extension.ExecutionCondition;
import org.junit.jupiter.api.extension.ExtensionContext;
@ -33,25 +32,8 @@ public class OracleCondition implements ExecutionCondition {
@Override
public ConditionEvaluationResult evaluateExecutionCondition(ExtensionContext theExtensionContext) {
return canUseOracle()
return DatabaseSupportUtil.canUseOracle()
? ConditionEvaluationResult.enabled(ENABLED_MSG)
: ConditionEvaluationResult.disabled(DISABLED_MSG);
}
public static boolean canUseOracle() {
if (!isMac()) {
return true;
}
return isColimaConfigured();
}
private static boolean isMac() {
return SystemUtils.IS_OS_MAC || SystemUtils.IS_OS_MAC_OSX;
}
private static boolean isColimaConfigured() {
return StringUtils.isNotBlank(System.getenv("TESTCONTAINERS_DOCKER_SOCKET_OVERRIDE"))
&& StringUtils.isNotBlank(System.getenv("DOCKER_HOST"))
&& System.getenv("DOCKER_HOST").contains("colima");
}
}

View File

@ -0,0 +1,34 @@
package ca.uhn.fhir.jpa.util;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.SystemUtils;
public final class DatabaseSupportUtil {
private DatabaseSupportUtil() {}
public static boolean canUseMsSql2019() {
return isSupportAmd64Architecture();
}
public static boolean canUseOracle() {
return isSupportAmd64Architecture();
}
private static boolean isSupportAmd64Architecture() {
if (!isMac()) {
return true;
}
return isColimaConfigured();
}
private static boolean isMac() {
return SystemUtils.IS_OS_MAC || SystemUtils.IS_OS_MAC_OSX;
}
private static boolean isColimaConfigured() {
return StringUtils.isNotBlank(System.getenv("TESTCONTAINERS_DOCKER_SOCKET_OVERRIDE"))
&& StringUtils.isNotBlank(System.getenv("DOCKER_HOST"))
&& System.getenv("DOCKER_HOST").contains("colima");
}
}

View File

@ -24,9 +24,11 @@ import jakarta.annotation.Nonnull;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.sql.Connection;
import java.sql.SQLException;
import java.util.Arrays;
import java.util.List;
import java.util.Optional;
/**
* Migration task that handles cross-database logic for adding a new primary key.
@ -37,7 +39,7 @@ public class AddPrimaryKeyTask extends BaseTableTask {
private final List<String> myPrimaryKeyColumnsInOrder;
public AddPrimaryKeyTask(
String theProductVersion, String theSchemaVersion, String theTableName, String... theColumnsInOrder) {
String theProductVersion, String theSchemaVersion, String theTableName, String... theColumnsInOrder) {
super(theProductVersion, theSchemaVersion);
setTableName(theTableName);
@ -46,32 +48,39 @@ public class AddPrimaryKeyTask extends BaseTableTask {
@Nonnull
private String generateSql() {
switch (getDriverType()) {
case MYSQL_5_7:
case MARIADB_10_1:
case POSTGRES_9_4:
case DERBY_EMBEDDED:
case H2_EMBEDDED:
case ORACLE_12C:
case MSSQL_2012:
case COCKROACHDB_21_1:
return String.format(
try (Connection connection = getConnectionProperties().getDataSource().getConnection()) {
switch (getDriverType()) {
case MYSQL_5_7:
case MARIADB_10_1:
case POSTGRES_9_4:
case DERBY_EMBEDDED:
case H2_EMBEDDED:
case ORACLE_12C:
case MSSQL_2012:
case COCKROACHDB_21_1:
return String.format(
"ALTER TABLE %s ADD PRIMARY KEY (%s)",
getTableName(), String.join(", ", myPrimaryKeyColumnsInOrder));
default:
throw new IllegalStateException(String.format(
Optional.of(connection.getSchema())
.map(schema -> String.format("%s.%s", schema, getTableName()))
.orElse(getTableName()),
String.join(", ", myPrimaryKeyColumnsInOrder));
default:
throw new IllegalStateException(String.format(
"%s Unknown driver type. Cannot add primary key for task %s",
Msg.code(2531), getMigrationVersion()));
}
} catch (SQLException e) {
throw new IllegalStateException(e);
}
}
@Override
protected void doExecute() throws SQLException {
logInfo(
ourLog,
"Going to add a primary key on table {} for columns {}",
getTableName(),
myPrimaryKeyColumnsInOrder);
ourLog,
"Going to add a primary key on table {} for columns {}",
getTableName(),
myPrimaryKeyColumnsInOrder);
executeSql(getTableName(), generateSql());
}

View File

@ -20,14 +20,17 @@
package ca.uhn.fhir.jpa.migrate.taskdef;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.jpa.migrate.DriverTypeEnum;
import com.google.common.collect.ImmutableList;
import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable;
import org.intellij.lang.annotations.Language;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.sql.Connection;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.util.Optional;
/**
* Migration task that handles cross-database logic for dropping a primary key.
@ -52,27 +55,13 @@ public class DropPrimaryKeyTask extends BaseTableTask {
@Nullable
@Language("SQL")
final String primaryKeyNameSql = generatePrimaryKeyNameSql();
@Nullable
final String primaryKeyName = primaryKeyNameSql != null
? newJdbcTemplate()
.queryForObject(primaryKeyNameSql, String.class, getTableNameWithDatabaseExpectedCase())
: null;
final String primaryKeyName = getPrimaryKeyName();
ourLog.debug("primaryKeyName: {} for driver: {}", primaryKeyName, getDriverType());
return generateDropPrimaryKeySql(primaryKeyName);
}
private String getTableNameWithDatabaseExpectedCase() {
if (DriverTypeEnum.ORACLE_12C == getDriverType()) {
return getTableName().toUpperCase();
}
return getTableName().toLowerCase();
}
@Override
protected void doExecute() throws SQLException {
logInfo(ourLog, "Going to DROP the PRIMARY KEY on table {}", getTableName());
@ -81,56 +70,63 @@ public class DropPrimaryKeyTask extends BaseTableTask {
}
private String generateDropPrimaryKeySql(@Nullable String thePrimaryKeyName) {
switch (getDriverType()) {
case MARIADB_10_1:
case DERBY_EMBEDDED:
case H2_EMBEDDED:
@Language("SQL")
final String sqlH2 = "ALTER TABLE %s DROP PRIMARY KEY";
return String.format(sqlH2, getTableName());
case POSTGRES_9_4:
case ORACLE_12C:
case MSSQL_2012:
case MYSQL_5_7:
assert thePrimaryKeyName != null;
@Language("SQL")
final String sql = "ALTER TABLE %s DROP CONSTRAINT %s";
return String.format(sql, getTableName(), thePrimaryKeyName);
default:
throw new IllegalStateException(String.format(
try (Connection connection = getConnectionProperties().getDataSource().getConnection()) {
switch (getDriverType()) {
case MARIADB_10_1:
case DERBY_EMBEDDED:
case H2_EMBEDDED:
@Language("SQL")
final String sqlH2 = "ALTER TABLE %s DROP PRIMARY KEY";
return String.format(
sqlH2,
Optional.of(connection.getSchema())
.map(schema -> String.format("%s.%s", schema, getTableName()))
.orElse(getTableName()));
case POSTGRES_9_4:
case ORACLE_12C:
case MSSQL_2012:
case MYSQL_5_7:
assert thePrimaryKeyName != null;
@Language("SQL")
final String sql = "ALTER TABLE %s DROP CONSTRAINT %s";
return String.format(
sql,
Optional.of(connection.getSchema())
.map(schema -> String.format("%s.%s", schema, getTableName()))
.orElse(getTableName()),
thePrimaryKeyName);
default:
throw new IllegalStateException(String.format(
"%s Unknown driver type: %s. Cannot drop primary key: %s for task %s",
Msg.code(2529), getDriverType(), getMigrationVersion(), getTableName()));
}
} catch (SQLException e) {
throw new IllegalStateException(e);
}
}
@Language("SQL")
@SuppressWarnings({"NestedTryStatement", "MethodWithMultipleLoops"})
@Nullable
private String generatePrimaryKeyNameSql() {
switch (getDriverType()) {
case MYSQL_5_7:
case MARIADB_10_1:
case DERBY_EMBEDDED:
case COCKROACHDB_21_1:
case H2_EMBEDDED:
return null; // Irrelevant: We don't need to run the SQL for these databases.
case POSTGRES_9_4:
return "SELECT constraint_name " + "FROM information_schema.table_constraints "
+ "WHERE table_schema = 'public' "
+ "AND constraint_type = 'PRIMARY KEY' "
+ "AND table_name = ?";
case ORACLE_12C:
return "SELECT constraint_name " + "FROM user_constraints "
+ "WHERE constraint_type = 'P' "
+ "AND table_name = ?";
case MSSQL_2012:
return "SELECT tc.constraint_name " + "FROM information_schema.table_constraints tc "
+ "JOIN information_schema.constraint_column_usage ccu ON tc.constraint_name = ccu.constraint_name "
+ "WHERE tc.constraint_type = 'PRIMARY KEY' "
+ "AND tc.table_name = ?";
default:
throw new IllegalStateException(String.format(
"%s Unknown driver type: %s Cannot find primary key to drop for task %s",
Msg.code(2530), getDriverType(), getMigrationVersion()));
private String getPrimaryKeyName() {
String primaryKey = null;
try (Connection connection = getConnectionProperties().getDataSource().getConnection()) {
for (String tableName : ImmutableList.of(
getTableName().toLowerCase(), getTableName().toUpperCase())) {
try (ResultSet resultSet = connection
.getMetaData()
.getPrimaryKeys(connection.getCatalog(), connection.getSchema(), tableName)) {
while (resultSet.next()) {
primaryKey = resultSet.getString(6);
}
} catch (SQLException e) {
throw new IllegalStateException(e);
}
}
} catch (SQLException e) {
throw new IllegalStateException(e);
}
return primaryKey;
}
}