Ken Stevens 03ebcafdf5
In-memory matcher (#1116)
* Initial refactoring to move database matcher out into its own class

* MAJOR REFACTOR: Pulled indexing code out of BaseHapiFhirDao into a new class ResourceIndexedSearchParams

* Moved calculateHashes

* Replaced @Bean definitions in BaseConfig.java with @ComponentScan

Annotated bean classes with either @Service (if it's stateless) or @Component (if it's stateful).  It doesn't really matter which annotation is used, but it's helpful to see at a glance whether a bean is stateful or stateless.

* Move services out of BaseHapiFhirDao

Moved services required by ResourceIndexedSearchParams out of BaseHapiFhirDao and into new classes called LogicalReferenceHelper, IdHelperService, MatchUrlService, and DaoProvider.

Converted SearchBuilder into Prototype Bean

Mark Spring components that depend on daos and entitymanagers with @Lazy so they aren't picked up by hapi-fhir-spring-boot-autoconfigure.

* Added SubscriptionMatcherInMemory

Moved static data out of BaseHapiFhirDao into ResourceMetaParams

Moved translateMatchUrl methods out of BaseHapiFhirDao into MatchUrlService bean

Simplified SubscriptionMatcherInMemory to not depend on entity or dao

Turned all subscribers into prototype beans

* Moved searchParam method out to mySearchParamProvider

Also removed dao and contest parameters from of myMatchUrlService methods

Moved code out of SearchBuilder into SearchParameterMap.clean() so it can be used by inMemoryMatcher

Introduced a new composite subscription matcher that tries to match in memory and if it finds a parameter in the criteria it doesn't support, it falls back to the database matcher.

* Added support for references

Also fixed a small bug in SearchParameterMap that was missing the ";" after "_has" when creating a normalized query from search params.

* Finished implementing all tests from FhirResourceDaoR4SearchNoFtTest

* Make in-memory matcher configurable, disabled by default

* Validate Subscription criteria when they're submitted

Send HTTP 422 UnprocessableEntityException if the criteria fail validation.

* fixed Sonar "Blocker" issues.

*  Don't reload the resource before sending it out

Since we can always force a reload using restHookDetails.isDeliverLatestVersion

* Added tests to cover Custom Search param.

* Split ResourceIndexedSearchParam into separate state and service classes

* Cleaned up SearchBuilder.

Removed uses of myCallingDao as an injection mechanism.
Left // FIXME KHS cookie crumbs to clean up

* Reduced dependencies on BaseHapiFhirDao

Removed methods from IDao interface that were used for injection

* Updated change log
2018-11-19 16:19:52 -05:00

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XML

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<modelVersion>4.0.0</modelVersion>
<parent>
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR JPA Server</name>
<dependencies>
<!--
<dependency>
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<!-- For UCUM: TODO we should replace this with org.fhir UCUM -->
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<!-- Patch Dependencies -->
<dependency>
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<!-- FHIR RI is pulled in for UCUM support, but we don't want any of its dependencies. -->
<!-- <dependency> <groupId>me.fhir</groupId> <artifactId>fhir-dstu1</artifactId> <version>0.0.81.2489</version> <exclusions> <exclusion> <artifactId>Saxon-HE</artifactId> <groupId>net.sf.saxon</groupId>
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</exclusion> </exclusions> </dependency> -->
<!--
For some reason JavaDoc crashed during site generation unless we have this dependency
-->
<dependency>
<groupId>javax.interceptor</groupId>
<artifactId>javax.interceptor-api</artifactId>
<scope>provided</scope>
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<!--
Dependencies that need to be added since JDK9
-->
<dependency>
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<dependency>
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<!-- Test Database -->
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derby</artifactId>
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<dependency>
<groupId>junit</groupId>
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<exclusions>
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</dependency>
<!--
<dependency>
<groupId>org.apache.tomcat</groupId>
<artifactId>tomcat-catalina</artifactId>
<scope>test</scope>
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-->
<dependency>
<groupId>javax.servlet</groupId>
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<scope>provided</scope>
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<!-- <dependency> <groupId>org.hsqldb</groupId> <artifactId>hsqldb</artifactId> <version>2.3.2</version> </dependency> -->
<!-- Spring -->
<!--
<dependency>
<groupId>aopalliance</groupId>
<artifactId>aopalliance</artifactId>
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-->
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<dependency>
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<!--
<dependency>
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<artifactId>spring-integration-core</artifactId>
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-->
<dependency>
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<dependency>
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<properties>
<skip-hib4>false</skip-hib4>
<jackson.version>2.7.1</jackson.version>
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<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<configuration>
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<plugins>
<plugin>
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<artifactId>hibernate-maven-plugin</artifactId>
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<id>derby107</id>
<phase>process-classes</phase>
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<goal>create</goal>
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<configuration>
<dialect>org.hibernate.dialect.DerbyTenSevenDialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_derby107.sql</outputFile>
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</execution>
<execution>
<id>postgres94</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.PostgreSQL94Dialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_postgres94.sql</outputFile>
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</execution>
<execution>
<id>mysql57</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.MySQL57Dialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_mysql57.sql</outputFile>
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</execution>
<execution>
<id>mariadb103</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.MariaDB103Dialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_mariadb103.sql</outputFile>
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</execution>
<execution>
<id>oracle12c</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.Oracle12cDialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_oracle12c.sql</outputFile>
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</execution>
<execution>
<id>sqlserver2012</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.SQLServer2012Dialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_sqlserver2012.sql</outputFile>
</configuration>
</execution>
</executions>
<dependencies>
<!--
These have been added as explicit dependencies
as JDK9 no longer includes them by default
-->
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>${jaxb_api_version}</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-core</artifactId>
<version>${jaxb_core_version}</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
<version>${jaxb_core_version}</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<configuration>
<classFolders>
<classFolder>${basedir}/target/classes</classFolder>
<classFolder>${basedir}../hapi-fhir-base/target/classes</classFolder>
</classFolders>
<sourceFolders>
<sourceFolder>${basedir}/src/main/java</sourceFolder>
<sourceFolder>${basedir}/../hapi-fhir-base/src/main/java</sourceFolder>
</sourceFolders>
<dumpOnExit>true</dumpOnExit>
</configuration>
<executions>
<execution>
<id>default-prepare-agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<runOrder>alphabetical</runOrder>
<argLine>@{argLine} -Dfile.encoding=UTF-8 -Xmx20484M -Xss128M -XX:MetaspaceSize=512M -XX:MaxMetaspaceSize=2048M -XX:+CMSClassUnloadingEnabled -XX:+UseConcMarkSweepGC</argLine>
<forkCount>0.6C</forkCount>
</configuration>
</plugin>
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>${project.version}</version>
<executions>
<!--
<execution>
<id>build_dstu1</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>dstu</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.dstu</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu1.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
</configuration>
</execution>
-->
<execution>
<id>build_dstu2</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>dstu2</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.dstu2</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu2.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
<excludeResourceNames>
<!-- <excludeResourceName>OperationDefinition</excludeResourceName> <excludeResourceName>OperationOutcome</excludeResourceName> -->
</excludeResourceNames>
</configuration>
</execution>
<execution>
<id>build_dstu3</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>dstu3</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.dstu3</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu3.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
<excludeResourceNames>
</excludeResourceNames>
</configuration>
</execution>
<execution>
<id>build_r4</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>r4</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.r4</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
<excludeResourceNames>
</excludeResourceNames>
</configuration>
</execution>
</executions>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<id>add-source</id>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>target/generated-sources/tinder</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<resources>
<resource>
<directory>${project.basedir}/src/main/resources</directory>
</resource>
<resource>
<directory>${project.basedir}/target/generated-resources/tinder</directory>
</resource>
</resources>
</build>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
</plugin>
</plugins>
</reporting>
<profiles>
<profile>
<id>JENKINS</id>
<properties>
<skip-hib4>true</skip-hib4>
</properties>
</profile>
<profile>
<id>NOPARALLEL</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<forkCount>1</forkCount>
<excludes>
<exclude>**/stresstest/*</exclude>
</excludes>
</configuration>
</plugin>
</plugins>
</build>
</profile>
<profile>
<!--
This profile is used on the Travis CI server because the full test suite
runs for over 45 minutes on Travis, and Travis kills it.. So we don't execute
all of the tests there.
This seems like it must be an issue with Travis's environment, since AppVeyor
can run the full build in much less time, but I don't know how to fix it
yet..
-->
<id>REDUCED_JPA_TESTS</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<forkCount>1</forkCount>
<reuseForks>true</reuseForks>
<runOrder>alphabetical</runOrder>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<excludes>
<exclude>**/*Dstu2*</exclude>
<exclude>**/*Dstu3*</exclude>
<exclude>**/stresstest/*</exclude>
</excludes>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
</project>