🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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dotasek 0abbb1a4f4
Core library bump 6.3.11 (#5772)
* Bump to core 6.2.6 + fix compilation errors

* Fix signature error

* Error ordering

* WIP 1 Fixing failing tests

* Fix FhirInstanceValidatorR4Test

* Fix FhirInstanceValidatorR5Test

* Fix FhirInstanceValidatorR4BTest

* Fix FhirInstanceValidatorDstu3Test.testValidateBuiltInProfiles()

* WIP Fix FhirInstanceValidatorDstu3Test

* Fix isPrimitiveType

* Add placeholder narratives to ServerCapabilityStatement

* Fix QuestionnaireResponseValidatorR4Test

* Newline cleanup

* Fix QuestionnaireResponseValidatorDstu3Test

* Fix QuestionnaireResponseValidatorR5Test

* Increase expected error messages by two because VALIDATION_HL7_WG_NEEDED

New validation requirement as of 2023-09-16

* Add placeholder fix for Balp narrative

* Fix expected validation messages

* Fix more expected validation messages

* Don't generate a master IPS narrative

* Fix IPS generation tests expecting old composition narrative

* Update fhir core and clinical-reasoning

* Remove commented code

* Bump to core 6.2.16-SNAPSHOT

* Add missing methods

* Add missing methods 2

* Fix error codes

* Fix error code

* Fix failing tests for Unsupported method 2488

* Fix error text

* Fix another expected error message

* Apply spotless

* Fix error strings

* Add minimal implementation to fix failing test

* Fix error message

* Fix some validation tests (r4)

* Fix more R5 tests

* Update for changing API

* Fix some R4B test failures

* Fix android incompatibility

* Fix more tests

* Switch back to LF

* Fix more tests 2

* Fix R4 IPS generation use of relative references, switch to random UUID

* Fix missing codes and patient ID in IPS test

* Fix missing codes in IPS R4 Test 2

* Fix display value

* Fix display value

* Reorg wrapper issue collection; fixes errors with Balp and others

* Update for API changes

* Fix code set typo causing test failure

* Fix DiffProviderR4Test

* Fix RepositoryValidatingInterceptorHttpR4Test fails

due to stricter code validation

* More code fixes

* Don't expect an extra error.

* Use more specific logic for details tx code

* Catch expected error

* Clean up

* Account for HAPI isEnabledValidationForCodingsLogicalAnd cases

* Apply spotless

* Change outputs for en_US single code test

* Add missing system from code to pass validation

* Account for DSTU3 and R4 including different code systems for race

* Add expected loinc codes to test dao

* Add some codesystem support for test

* Bump core version

* WIP pass on a list of CodeValidationIssue from CodeValidationResults

* Re-use v2 and v3 data from r4 in r4b

* CodeSystems can be supported, but not have a resource

* Remove hack around unitsofmeasure + return false LookupCodeResult

* Clean up chatter.

* Update test cases, remove FIXME

* Stop returning before adding all issues to ValidationResults

* Update for changes in core API

* Add severity to code issues + return to unknown system support

* Use new CollectionUtils

* Fix more issue messages and orders + null in TermReadSvcImpl

* After checking valueSet, also check codeSystem

* On second thought, always check the codesystem

* Improve validation message

* Refactor

* Add error consistent with core validator results

* Decrement query counts for validation

* Improve code validation messages + don't miss invalid display on cs

* Fix expected messages (added code details)

* More expected message fixes

* Remove redundant text from diagnostics + match core exception handling

* Explicitly send tx passthrough messages no longer managed in core

* Apply spotless

* Add issue to code validation in TermReadSvcImpl

* Adjust indexes of expected errors now that TermReadSvc is reporting

* Bump to released core version

* Code cleanup: commented code

* More commented code cleanup

* Fix parameter names

* Use Set.of and List.of + fix duplicate values in set

* Revert animal sniffed breakage, make field private

* Add comments to describe disabled test

* Remove System.out chatter

* Fix javadoc generation for r5 structures module

* More comments and move disabled annotation

It was working when it left the shop.

* Move older changelog into 7.4.0 and create core update changelog

* Switch changelog type to change

* Bump HAPI version

* Add validation utils for FATAL issue severity

* Handle FATAL codeValidationIssue severity

* Fix test (validation throws more warnings)

* Bump to version 7.3.4-SNAPSHOT

* Bump to SNAPSHOT version of core + add necessary method implementations

* Add comments to explain R4 terminology resources in R4B

* Add test for Observation vital signs profile validation

* Try using default validatorPolicyAdvisor

* Return an empty set for fetchCanonicalResourceVersions

* Profile now gives more explicit error instead of valueSet

* Revert commit

* Add CodeValidationIssues and additional error info

* Do not return first successful match from codings. Check all.

+ adjust for extra errors.

* apply spotless

* Fix failing test, add comments re: invocations

* Fix test to expect more informative error

* Fix stray compilation errors from merge.

* Fix merge overwrite of validation messages and indices

* Fix merge overwrite of new validation results

* Use core release 6.3.11

* Update HAPI version to 7.3.5-SNAPSHOT

* Fix changelog

* Remove commented code

---------

Co-authored-by: James Agnew <jamesagnew@gmail.com>
Co-authored-by: volodymyr <volodymyr.korzh@smilecdr.com>
2024-06-12 11:24:26 -06:00
.github Fix publish pipeline (#5613) 2024-01-19 23:23:26 +00:00
.mvn/wrapper Jakarta/Javax Servlet Migration (#5429) 2023-12-03 11:15:37 -05:00
.mvn_/wrapper Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
hapi-deployable-pom Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-android Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-android-realm Work on JPA 2017-02-02 06:23:28 -05:00
hapi-fhir-base Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-bom Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-checkstyle Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-cli Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-client Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-client-okhttp Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-converter Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-dist Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-docs Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jacoco Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jaxrsserver-base Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpa Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-base Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-elastic-test-utilities Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-hfql Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-ips Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-mdm Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-model Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-searchparam Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-subscription Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-test-dstu2 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-test-dstu3 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-test-r4 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-test-r4b Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-test-r5 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-test-utilities Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-jpaserver-uhnfhirtest Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-server Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-server-cds-hooks Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-server-mdm Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-server-openapi Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-serviceloaders Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-spring-boot Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-sql-migrate Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-storage Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-storage-batch2 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-storage-batch2-jobs Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-storage-batch2-test-utilities Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-storage-cr Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-storage-mdm Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-storage-test-utilities Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-structures-dstu2 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-structures-dstu2.1 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-structures-dstu3 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-structures-hl7org-dstu2 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-structures-r4 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-structures-r4b Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-structures-r5 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-test-utilities Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-testpage-overlay Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-validation Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-validation-resources-dstu2 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-validation-resources-dstu2.1 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-validation-resources-dstu3 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-validation-resources-r4 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-validation-resources-r4b Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-fhir-validation-resources-r5 Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-tinder-plugin Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
hapi-tinder-test Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
osgi Replace hamcrest with assertj (#5911) 2024-06-05 16:02:46 -04:00
src/assembly Checkstyle cleanup (#4501) 2023-02-03 09:40:32 -05:00
tests Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
vagrant Bump dependencies for CVES (#3359) 2022-02-07 07:56:25 -05:00
.editorconfig IPS API Refactor (#5682) 2024-02-11 10:43:56 -05:00
.gitignore nickname svc refatoring (#5006) 2023-06-22 08:26:47 -04:00
.pre-commit-config.yaml Update pre-commit from 0.3.3 to 0..3.4. (#5537) 2023-12-06 00:52:53 +00:00
.whitesource Add .whitesource configuration file 2021-04-29 13:42:31 +00:00
HELPWANTED.md New formatting rules and pre-commit hooks (#5027) 2023-07-11 17:36:44 -07:00
LICENSE.txt Add license and notice files 2015-03-25 22:32:32 -04:00
LOINC_NOTES.txt More work on loinc 2018-03-19 08:51:02 -04:00
NOTICE.txt Add license and notice files 2015-03-25 22:32:32 -04:00
README.md New formatting rules and pre-commit hooks (#5027) 2023-07-11 17:36:44 -07:00
azure-pipelines.yml Initial HFQL SQL Implementation (#5083) 2023-07-21 22:51:23 +00:00
check_for_maven_updates.sh Fix up examples 2014-09-03 18:03:44 -04:00
lgtm.yml code coverage needs to run only for JACOCO PROFILE (#4230) 2022-11-02 15:34:27 -04:00
list_releases.sh Implement handleException on the server interceptor framework, as well 2014-11-07 14:26:59 -05:00
mvnw Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
mvnw.cmd Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
pom.xml Core library bump 6.3.11 (#5772) 2024-06-12 11:24:26 -06:00
release-pipeline.yml Rel 7 0 mb 2 (#5714) 2024-02-23 11:03:26 -07:00
snapshot-pipeline.yml Fix publish pipeline (#5613) 2024-01-19 23:23:26 +00:00
sync.sh Update resource defs 2015-12-01 18:35:24 -05:00
sync_dstu3.sh Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-01 14:31:25 -04:00
sync_ri.sh Bump to 1.0.2 FHIR definitions 2015-11-15 12:22:56 -05:00
sync_ri3.fish Bring DSTU3 structs up to FHIR R3 2017-04-18 07:48:38 -04:00
sync_ri3.sh Syn RI - Build still failing :( 2016-05-28 12:53:59 -04:00
sync_ri4.sh Squashed commit of the following: 2018-12-27 17:58:47 -05:00
sync_ri5.sh Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
sync_ri21.sh Update model and definitions to latest definitions 2016-01-30 11:08:16 -05:00
test-job-template.yml HAPI FHIR Dependency Bumps (#5576) 2024-01-14 14:15:08 -05:00
update_version.sh Force another travis build 2015-08-05 10:38:38 -04:00

README.md

HAPI FHIR

HAPI FHIR - Java API for HL7 FHIR Clients and Servers

License

CI/CD

CI Status (master) SNAPSHOT Pipeline Current Release
Build Status Build Status Release Artifacts

Coverage and Quality

codecov Language grade: Java

Documentation and wiki

Complete project documentation is available here: http://hapifhir.io

A demonstration of this project is available here: http://hapi.fhir.org/

This project is Open Source, licensed under the Apache Software License 2.0.

Please see this wiki page for information on where to get help with HAPI FHIR.

Please see Smile CDR for information on commercial support.