697 lines
20 KiB
XML
697 lines
20 KiB
XML
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>3.0.0-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
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<packaging>jar</packaging>
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<name>HAPI FHIR JPA Server</name>
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<dependencies>
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<!--
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<dependency>
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<groupId>com.fasterxml.jackson.jaxrs</groupId>
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<artifactId>jackson-jaxrs-json-provider</artifactId>
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<version>${jackson.version}</version>
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</dependency>
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<dependency>
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<groupId>com.fasterxml.jackson.datatype</groupId>
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<artifactId>jackson-datatype-hibernate4</artifactId>
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<version>${jackson.version}</version>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-lang3</artifactId>
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<version>3.5</version>
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</dependency>
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-->
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<dependency>
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<groupId>net.sf.saxon</groupId>
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<artifactId>Saxon-HE</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-csv</artifactId>
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<version>1.3</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-base</artifactId>
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<version>${project.version}</version>
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<exclusions>
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<exclusion>
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<artifactId>commons-logging</artifactId>
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<groupId>commons-logging</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-client</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu3</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r4</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r4</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>org.slf4j</groupId>
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<artifactId>jcl-over-slf4j</artifactId>
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</dependency>
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<dependency>
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<groupId>ch.qos.logback</groupId>
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<artifactId>logback-classic</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>net.ttddyy</groupId>
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<artifactId>datasource-proxy</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.javassist</groupId>
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<artifactId>javassist</artifactId>
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</dependency>
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<dependency>
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<groupId>com.phloc</groupId>
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<artifactId>phloc-schematron</artifactId>
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<scope>test</scope>
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<exclusions>
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<exclusion>
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<artifactId>Saxon-HE</artifactId>
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<groupId>net.sf.saxon</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>com.phloc</groupId>
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<artifactId>phloc-commons</artifactId>
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<scope>test</scope>
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</dependency>
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<!-- For UCUM -->
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<dependency>
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<groupId>org.jscience</groupId>
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<artifactId>jscience</artifactId>
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</dependency>
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<!-- Patch Dependencies -->
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<dependency>
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<groupId>net.riotopsys</groupId>
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<artifactId>json_patch</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>com.google.code.gson</artifactId>
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<groupId>gson</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>com.github.dnault</groupId>
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<artifactId>xml-patch</artifactId>
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<version>0.3.0</version>
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</dependency>
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<!-- FHIR RI is pulled in for UCUM support, but we don't want any of its dependencies. -->
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<!-- <dependency> <groupId>me.fhir</groupId> <artifactId>fhir-dstu1</artifactId> <version>0.0.81.2489</version> <exclusions> <exclusion> <artifactId>Saxon-HE</artifactId> <groupId>net.sf.saxon</groupId>
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</exclusion> <exclusion> <artifactId>commons-discovery</artifactId> <groupId>commons-discovery</groupId> </exclusion> <exclusion> <artifactId>commons-codec</artifactId> <groupId>commons-codec</groupId>
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</exclusion> <exclusion> <artifactId>commons-logging</artifactId> <groupId>commons-logging</groupId> </exclusion> <exclusion> <artifactId>xpp3</artifactId> <groupId>xpp3</groupId> </exclusion> <exclusion>
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<artifactId>junit</artifactId> <groupId>junit</groupId> </exclusion> <exclusion> <artifactId>jdom</artifactId> <groupId>org.jdom</groupId> </exclusion> <exclusion> <artifactId>gson</artifactId> <groupId>com.google.code.gson</groupId>
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</exclusion> </exclusions> </dependency> -->
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<!--
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For some reason JavaDoc crashed during site generation unless we have this dependency
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-->
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<dependency>
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<groupId>javax.interceptor</groupId>
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<artifactId>javax.interceptor-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<!-- Test Database -->
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<dependency>
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<groupId>org.apache.derby</groupId>
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<artifactId>derby</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-dbcp2</artifactId>
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<scope>test</scope>
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</dependency>
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<!--
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<dependency>
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<groupId>org.apache.tomcat</groupId>
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<artifactId>tomcat-catalina</artifactId>
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<scope>test</scope>
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</dependency>
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-->
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<dependency>
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<groupId>javax.servlet</groupId>
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<artifactId>javax.servlet-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<!-- <dependency> <groupId>org.hsqldb</groupId> <artifactId>hsqldb</artifactId> <version>2.3.2</version> </dependency> -->
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<!-- Spring -->
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<dependency>
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<groupId>aopalliance</groupId>
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<artifactId>aopalliance</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-core</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>commons-logging</artifactId>
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<groupId>commons-logging</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-orm</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-context</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>xml-apis</artifactId>
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<groupId>xml-apis</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-beans</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework.data</groupId>
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<artifactId>spring-data-jpa</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>spring-aop</artifactId>
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<groupId>org.springframework</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-messaging</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-tx</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-context-support</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-webmvc</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-websocket</artifactId>
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</dependency>
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<!-- Hibernate -->
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-core</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>xml-apis</artifactId>
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<groupId>xml-apis</groupId>
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</exclusion>
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<exclusion>
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<groupId>org.jboss.spec.javax.transaction</groupId>
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<artifactId>jboss-transaction-api_1.2_spec</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-entitymanager</artifactId>
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<exclusions>
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<exclusion>
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<groupId>org.jboss.spec.javax.transaction</groupId>
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<artifactId>jboss-transaction-api_1.2_spec</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-ehcache</artifactId>
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<exclusions>
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<exclusion>
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<groupId>net.sf.ehcache</groupId>
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<artifactId>ehcache-core</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-validator</artifactId>
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<exclusions>
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<exclusion>
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<groupId>com.fasterxml</groupId>
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<artifactId>classmate</artifactId>
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</exclusion>
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<exclusion>
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<groupId>org.jboss.logging</groupId>
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<artifactId>jboss-logging</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>javax.transaction</groupId>
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<artifactId>javax.transaction-api</artifactId>
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</dependency>
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<dependency>
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<groupId>javax.mail</groupId>
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<artifactId>javax.mail-api</artifactId>
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</dependency>
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<dependency>
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<groupId>javax.validation</groupId>
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<artifactId>validation-api</artifactId>
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</dependency>
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<dependency>
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<groupId>javax.el</groupId>
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<artifactId>javax.el-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>org.glassfish</groupId>
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<artifactId>javax.el</artifactId>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-search-orm</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.lucene</groupId>
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<artifactId>lucene-highlighter</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.lucene</groupId>
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<artifactId>lucene-analyzers-phonetic</artifactId>
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</dependency>
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<!-- Misc -->
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<dependency>
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<groupId>com.google.guava</groupId>
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<artifactId>guava</artifactId>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlets</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlet</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-server</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-util</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-webapp</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-api</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-client</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty.websocket</groupId>
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<artifactId>websocket-server</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-test</artifactId>
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<scope>test</scope>
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</dependency>
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</dependencies>
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<properties>
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<skip-hib4>false</skip-hib4>
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<jackson.version>2.7.1</jackson.version>
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</properties>
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<build>
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<pluginManagement>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-site-plugin</artifactId>
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<configuration>
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<skipDeploy>true</skipDeploy>
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</configuration>
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</plugin>
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</plugins>
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</pluginManagement>
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<plugins>
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<plugin>
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<groupId>de.juplo</groupId>
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<artifactId>hibernate-maven-plugin</artifactId>
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<executions>
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<execution>
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<id>postgres94</id>
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<phase>process-classes</phase>
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<goals>
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<goal>create</goal>
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</goals>
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<configuration>
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<dialect>org.hibernate.dialect.PostgreSQL94Dialect</dialect>
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<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_postgres94.sql</outputFile>
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</configuration>
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</execution>
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<execution>
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<id>mysql57</id>
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<phase>process-classes</phase>
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<goals>
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<goal>create</goal>
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</goals>
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<configuration>
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<dialect>org.hibernate.dialect.MySQL57InnoDBDialect</dialect>
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<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_mysql57.sql</outputFile>
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|
</configuration>
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</execution>
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<execution>
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<id>oracle12c</id>
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|
<phase>process-classes</phase>
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<goals>
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<goal>create</goal>
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|
</goals>
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|
<configuration>
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|
<dialect>org.hibernate.dialect.Oracle12cDialect</dialect>
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<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_oracle12c.sql</outputFile>
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</configuration>
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</execution>
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<execution>
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<id>sqlserver2012</id>
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|
<phase>process-classes</phase>
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<goals>
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<goal>create</goal>
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|
</goals>
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|
<configuration>
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|
<dialect>org.hibernate.dialect.SQLServer2012Dialect</dialect>
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|
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_sqlserver2012.sql</outputFile>
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</configuration>
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</execution>
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</executions>
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</plugin>
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<plugin>
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|
<groupId>org.jacoco</groupId>
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|
<artifactId>jacoco-maven-plugin</artifactId>
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|
<configuration>
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|
<classFolders>
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<classFolder>${basedir}/target/classes</classFolder>
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<classFolder>${basedir}../hapi-fhir-base/target/classes</classFolder>
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|
</classFolders>
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|
<sourceFolders>
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<sourceFolder>${basedir}/src/main/java</sourceFolder>
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|
<sourceFolder>${basedir}/../hapi-fhir-base/src/main/java</sourceFolder>
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</sourceFolders>
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<dumpOnExit>true</dumpOnExit>
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</configuration>
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|
<executions>
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|
<execution>
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<id>default-prepare-agent</id>
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|
<goals>
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|
<goal>prepare-agent</goal>
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|
</goals>
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|
</execution>
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|
</executions>
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</plugin>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
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|
<artifactId>maven-surefire-plugin</artifactId>
|
|
<configuration>
|
|
<runOrder>alphabetical</runOrder>
|
|
<argLine>${argLine} -Dfile.encoding=UTF-8 -Xmx1024m</argLine>
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|
<forkCount>0.6C</forkCount>
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|
</configuration>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-tinder-plugin</artifactId>
|
|
<version>${project.version}</version>
|
|
<executions>
|
|
<!--
|
|
<execution>
|
|
<id>build_dstu1</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>dstu</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.dstu</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu1.xml</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
-->
|
|
<execution>
|
|
<id>build_dstu2</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>dstu2</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.dstu2</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu2.xml</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
<!-- <excludeResourceName>OperationDefinition</excludeResourceName> <excludeResourceName>OperationOutcome</excludeResourceName> -->
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_dstu3</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>dstu3</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.dstu3</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu3.xml</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_r4</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>r4</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.r4</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4.xml</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
</executions>
|
|
|
|
<dependencies>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-dstu2</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-dstu3</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-r4</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
</dependencies>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.codehaus.mojo</groupId>
|
|
<artifactId>build-helper-maven-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<id>add-source</id>
|
|
<phase>generate-sources</phase>
|
|
<goals>
|
|
<goal>add-source</goal>
|
|
</goals>
|
|
<configuration>
|
|
<sources>
|
|
<source>target/generated-sources/tinder</source>
|
|
</sources>
|
|
</configuration>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
</plugins>
|
|
<resources>
|
|
<resource>
|
|
<directory>${basedir}/src/main/resources</directory>
|
|
</resource>
|
|
<resource>
|
|
<directory>${basedir}/target/generated-resources/tinder</directory>
|
|
</resource>
|
|
</resources>
|
|
</build>
|
|
|
|
<reporting>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-jxr-plugin</artifactId>
|
|
</plugin>
|
|
</plugins>
|
|
</reporting>
|
|
|
|
<profiles>
|
|
<profile>
|
|
<id>JENKINS</id>
|
|
<properties>
|
|
<skip-hib4>true</skip-hib4>
|
|
</properties>
|
|
</profile>
|
|
<profile>
|
|
<id>NOPARALLEL</id>
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-surefire-plugin</artifactId>
|
|
<configuration>
|
|
<forkCount>1</forkCount>
|
|
<excludes>
|
|
<exclude>**/stresstest/*</exclude>
|
|
</excludes>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
<profile>
|
|
<id>MINPARALLEL</id>
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-surefire-plugin</artifactId>
|
|
<configuration>
|
|
<forkCount>2</forkCount>
|
|
<reuseForks>true</reuseForks>
|
|
<excludes>
|
|
<exclude>**/stresstest/*</exclude>
|
|
</excludes>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
</profiles>
|
|
|
|
</project>
|