hapi-fhir/hapi-fhir-jpaserver-base/pom.xml

795 lines
23 KiB
XML

<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>3.3.0-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-jpaserver-base</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR JPA Server</name>
<dependencies>
<!--
<dependency>
<groupId>com.fasterxml.jackson.jaxrs</groupId>
<artifactId>jackson-jaxrs-json-provider</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-hibernate4</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.5</version>
</dependency>
-->
<dependency>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>woodstox-core-asl</artifactId>
</dependency>
<dependency>
<groupId>net.sf.saxon</groupId>
<artifactId>Saxon-HE</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-csv</artifactId>
<version>1.3</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-client</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-server</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
<version>${project.version}</version>
</dependency>
<!--
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
</dependency>
-->
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>net.ttddyy</groupId>
<artifactId>datasource-proxy</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.javassist</groupId>
<artifactId>javassist</artifactId>
</dependency>
<!-- Jackson -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
</dependency>
<dependency>
<groupId>com.phloc</groupId>
<artifactId>phloc-schematron</artifactId>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>Saxon-HE</artifactId>
<groupId>net.sf.saxon</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.phloc</groupId>
<artifactId>phloc-commons</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf-spring4</artifactId>
</dependency>
<!-- For UCUM: TODO we should replace this with org.fhir UCUM -->
<dependency>
<groupId>org.jscience</groupId>
<artifactId>jscience</artifactId>
</dependency>
<!-- Patch Dependencies -->
<dependency>
<groupId>net.riotopsys</groupId>
<artifactId>json_patch</artifactId>
<exclusions>
<exclusion>
<artifactId>com.google.code.gson</artifactId>
<groupId>gson</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.github.dnault</groupId>
<artifactId>xml-patch</artifactId>
<version>0.3.0</version>
</dependency>
<!-- FHIR RI is pulled in for UCUM support, but we don't want any of its dependencies. -->
<!-- <dependency> <groupId>me.fhir</groupId> <artifactId>fhir-dstu1</artifactId> <version>0.0.81.2489</version> <exclusions> <exclusion> <artifactId>Saxon-HE</artifactId> <groupId>net.sf.saxon</groupId>
</exclusion> <exclusion> <artifactId>commons-discovery</artifactId> <groupId>commons-discovery</groupId> </exclusion> <exclusion> <artifactId>commons-codec</artifactId> <groupId>commons-codec</groupId>
</exclusion> <exclusion> <artifactId>commons-logging</artifactId> <groupId>commons-logging</groupId> </exclusion> <exclusion> <artifactId>xpp3</artifactId> <groupId>xpp3</groupId> </exclusion> <exclusion>
<artifactId>junit</artifactId> <groupId>junit</groupId> </exclusion> <exclusion> <artifactId>jdom</artifactId> <groupId>org.jdom</groupId> </exclusion> <exclusion> <artifactId>gson</artifactId> <groupId>com.google.code.gson</groupId>
</exclusion> </exclusions> </dependency> -->
<!--
For some reason JavaDoc crashed during site generation unless we have this dependency
-->
<dependency>
<groupId>javax.interceptor</groupId>
<artifactId>javax.interceptor-api</artifactId>
<scope>provided</scope>
</dependency>
<!-- Test Database -->
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derby</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-dbcp2</artifactId>
<scope>test</scope>
</dependency>
<!--
<dependency>
<groupId>org.apache.tomcat</groupId>
<artifactId>tomcat-catalina</artifactId>
<scope>test</scope>
</dependency>
-->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<scope>provided</scope>
</dependency>
<!-- <dependency> <groupId>org.hsqldb</groupId> <artifactId>hsqldb</artifactId> <version>2.3.2</version> </dependency> -->
<!-- Spring -->
<!--
<dependency>
<groupId>aopalliance</groupId>
<artifactId>aopalliance</artifactId>
</dependency>
-->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<exclusions>
<exclusion>
<artifactId>xml-apis</artifactId>
<groupId>xml-apis</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<exclusions>
<exclusion>
<artifactId>spring-aop</artifactId>
<groupId>org.springframework</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-messaging</artifactId>
</dependency>
<!--
<dependency>
<groupId>org.springframework.integration</groupId>
<artifactId>spring-integration-core</artifactId>
</dependency>
-->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-websocket</artifactId>
</dependency>
<!-- Hibernate -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<exclusions>
<exclusion>
<artifactId>xml-apis</artifactId>
<groupId>xml-apis</groupId>
</exclusion>
<exclusion>
<groupId>org.jboss.spec.javax.transaction</groupId>
<artifactId>jboss-transaction-api_1.2_spec</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<exclusions>
<exclusion>
<groupId>org.jboss.spec.javax.transaction</groupId>
<artifactId>jboss-transaction-api_1.2_spec</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-ehcache</artifactId>
<exclusions>
<exclusion>
<groupId>net.sf.ehcache</groupId>
<artifactId>ehcache-core</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<exclusions>
<exclusion>
<groupId>com.fasterxml</groupId>
<artifactId>classmate</artifactId>
</exclusion>
<exclusion>
<groupId>org.jboss.logging</groupId>
<artifactId>jboss-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>javax.transaction</groupId>
<artifactId>javax.transaction-api</artifactId>
</dependency>
<dependency>
<groupId>javax.mail</groupId>
<artifactId>javax.mail-api</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>com.sun.mail</groupId>
<artifactId>javax.mail</artifactId>
</dependency>
<dependency>
<groupId>javax.validation</groupId>
<artifactId>validation-api</artifactId>
</dependency>
<dependency>
<groupId>javax.el</groupId>
<artifactId>javax.el-api</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.glassfish</groupId>
<artifactId>javax.el</artifactId>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-search-orm</artifactId>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-highlighter</artifactId>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers-phonetic</artifactId>
</dependency>
<!-- Misc -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-api</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-client</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-server</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.icegreen</groupId>
<artifactId>greenmail</artifactId>
<scope>test</scope>
<exclusions>
<exclusion>
<groupId>com.sun.mail</groupId>
<artifactId>javax.mail</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.icegreen</groupId>
<artifactId>greenmail-spring</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<properties>
<skip-hib4>false</skip-hib4>
<jackson.version>2.7.1</jackson.version>
</properties>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<configuration>
<skipDeploy>true</skipDeploy>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>de.juplo</groupId>
<artifactId>hibernate-maven-plugin</artifactId>
<executions>
<execution>
<id>derby107</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.DerbyTenSevenDialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_derby107.sql</outputFile>
</configuration>
</execution>
<execution>
<id>postgres94</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.PostgreSQL94Dialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_postgres94.sql</outputFile>
</configuration>
</execution>
<execution>
<id>mysql57</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.MySQL57InnoDBDialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_mysql57.sql</outputFile>
</configuration>
</execution>
<execution>
<id>oracle12c</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.Oracle12cDialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_oracle12c.sql</outputFile>
</configuration>
</execution>
<execution>
<id>sqlserver2012</id>
<phase>process-classes</phase>
<goals>
<goal>create</goal>
</goals>
<configuration>
<dialect>org.hibernate.dialect.SQLServer2012Dialect</dialect>
<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_sqlserver2012.sql</outputFile>
</configuration>
</execution>
</executions>
<dependencies>
<!--
These have been added as explicit dependencies
as JDK9 no longer includes them by default
-->
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>${jaxb_api_version}</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-core</artifactId>
<version>${jaxb_core_version}</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
<version>${jaxb_core_version}</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<configuration>
<classFolders>
<classFolder>${basedir}/target/classes</classFolder>
<classFolder>${basedir}../hapi-fhir-base/target/classes</classFolder>
</classFolders>
<sourceFolders>
<sourceFolder>${basedir}/src/main/java</sourceFolder>
<sourceFolder>${basedir}/../hapi-fhir-base/src/main/java</sourceFolder>
</sourceFolders>
<dumpOnExit>true</dumpOnExit>
</configuration>
<executions>
<execution>
<id>default-prepare-agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<runOrder>alphabetical</runOrder>
<argLine>${argLine} -Dfile.encoding=UTF-8 -Xmx1024m</argLine>
<forkCount>0.6C</forkCount>
</configuration>
</plugin>
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>${project.version}</version>
<executions>
<!--
<execution>
<id>build_dstu1</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>dstu</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.dstu</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu1.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
</configuration>
</execution>
-->
<execution>
<id>build_dstu2</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>dstu2</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.dstu2</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu2.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
<excludeResourceNames>
<!-- <excludeResourceName>OperationDefinition</excludeResourceName> <excludeResourceName>OperationOutcome</excludeResourceName> -->
</excludeResourceNames>
</configuration>
</execution>
<execution>
<id>build_dstu3</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>dstu3</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.dstu3</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu3.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
<excludeResourceNames>
</excludeResourceNames>
</configuration>
</execution>
<execution>
<id>build_r4</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<version>r4</version>
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
<packageBase>ca.uhn.fhir.jpa.rp.r4</packageBase>
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4.xml</targetResourceSpringBeansFile>
<baseResourceNames></baseResourceNames>
<excludeResourceNames>
</excludeResourceNames>
</configuration>
</execution>
</executions>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<id>add-source</id>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>target/generated-sources/tinder</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<resources>
<resource>
<directory>${basedir}/src/main/resources</directory>
</resource>
<resource>
<directory>${basedir}/target/generated-resources/tinder</directory>
</resource>
</resources>
</build>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
</plugin>
</plugins>
</reporting>
<profiles>
<profile>
<id>JENKINS</id>
<properties>
<skip-hib4>true</skip-hib4>
</properties>
</profile>
<profile>
<id>NOPARALLEL</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<forkCount>1</forkCount>
<excludes>
<exclude>**/stresstest/*</exclude>
</excludes>
</configuration>
</plugin>
</plugins>
</build>
</profile>
<profile>
<!--
This profile is used on the Travis CI server because the full test suite
runs for over 45 minutes on Travis, and Travis kills it.. So we don't execute
all of the tests there.
This seems like it must be an issue with Travis's environment, since AppVeyor
can run the full build in much less time, but I don't know how to fix it
yet..
-->
<id>REDUCED_JPA_TESTS</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<forkCount>1</forkCount>
<reuseForks>true</reuseForks>
<runOrder>alphabetical</runOrder>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<excludes>
<exclude>**/*Dstu2*</exclude>
<exclude>**/*Dstu3*</exclude>
<exclude>**/stresstest/*</exclude>
</excludes>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
</project>