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🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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Tadgh 54f578c8b1
Rel 6 0 mergeback (#3597) 
* adding version.yaml, updating version in pom.xml

* It is possible to write to a resource in a partition the user is not authorized to. (#3397)

* fixed

* remove sout

* add msg.code

* fix failed tests

* fix equal sign

* update msg code

* extract method

* Fix up code numbers

* Clean changelog

Co-authored-by: Tadgh <garygrantgraham@gmail.com>

* Revert final artifact version

* add graphql test (#3585)

* added graphql birthdate test

* fix variable name

* typo

* 3506 mdm log enhancement (#3543)

* Providing Fixme's to be reworked at a later time.

* Adding // FIXME Anna to assist our Austrian friend.

* Adding logging test as a first step in addressing issue #2822.

* hapifhir#3506 part 2: enhance logging for (un)successful MDM matching

hapifhir#3506 part 2: enhance logging for (un)successful MDM matching

* Update MdmMatchLinkSvc.java

#3506 move "narrowed down" log to different place

* #3506 added scores and tests

#3506 added scores and tests

* #3506 formatting

#3506 formatting

* #3506 create changelog file

#3506 create changelog file

* #3506 fix typo

#3506 fix typo

* #3506 fix part 3, minor formatting

#3506 fix part 3, minor formatting

* #3506 fix tests

#3506 fix tests

Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>

* mdm matching (#3579)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e66e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>

* begin with failing test

* fixed

* changelog

* add jira tag

* Update to 6 1 (#3582)

* added changelog folder, upped version

* version enum

* add a few more unit tests to assert proper NO_MATCH exclusion

* revert merge master doh! bad reflexes

* revert merge origin master

* unrevert revert.  ugh what a pain

* merge recovery.  fix poms.

* merge recovery.  more reverting

* merge recovery.  more reverting

* merge recovery.  more reverting

* Revert "merge recovery.  fix poms."

This reverts commit ae6e0ddb06.

* more revert revert reversions

* more revert revert reversions

* pre-review cleanup

Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>

* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)

* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.

* License

* Ks 20220508 log colour (#3592)

* don't use colours when output is redirected to a file

* change log

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e66e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>

Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>

* 3584 case sensitive string elasticsearch (#3596)

* Fix for case-sensitive search with newer elasticsearch

* Test and fix ascii normalization too

* more test cases

* comments

* Docs update empi usecase (#3598)

* Update diagram for use case 5

* Add new page for database support

* Licnese

* Mb norm fix (#3604)

* Normalize query since wildcard searches aren't normalized in elastic

* Handle batch2 job cancellation (#3603)

* Handle batch2 job cancellation

* Add CANCELLED status

* Remove unuseful test

Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>

* Add batch2 interfaces to obtain recent instances (#3601)

Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>

* changelog folder

* Documentation change, added warning log and change log for ticket (#3609)

Co-authored-by: Steven Li <steven@smilecdr.com>

* fix ne for lastUpdated search param (#3589)

* init/wip

* add implementation, add tests

* add checks and some refactoring

* refactor and simplify tests

* refactor

* get rid of some of the warnings

* add changelog

* remove my todos

* redo ne logic to account for less precise dates

* add tests

* refactoring

* rename to follow convention

Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>

* Version bump

Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: katiesmilecdr <88786813+katiesmilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: alackerbauer <33912849+alackerbauer@users.noreply.github.com>
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: michaelabuckley <michael.buckley@smilecdr.com>
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: StevenXLi <stevenli_8118@hotmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
 		2022-05-16 22:08:27 +00:00
.github bump compiler settings. JDK 11 for prod, JDK 17 for tests (#3435) 2022-02-28 21:51:32 +00:00
.mvn/wrapper Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
.mvn_/wrapper Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
hapi-deployable-pom Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-android Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-android-realm Work on JPA 2017-02-02 06:23:28 -05:00
hapi-fhir-base Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-batch Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-bom Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-checkstyle Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-cli Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-client Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-client-okhttp Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-converter Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-dist Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-docs Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-jacoco Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-jaxrsserver-base Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-jpa Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-jpaserver-base Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-jpaserver-cql Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-jpaserver-mdm Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-jpaserver-model Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-jpaserver-searchparam Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-jpaserver-subscription Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-jpaserver-test-utilities Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-jpaserver-uhnfhirtest Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-server Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-server-mdm Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-server-openapi Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-spring-boot Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-sql-migrate Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-storage Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-storage-batch2 Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-storage-batch2-jobs Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-storage-test-utilities Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-structures-dstu2 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-structures-dstu2.1 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-structures-dstu3 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-structures-hl7org-dstu2 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-structures-r4 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-structures-r5 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-test-utilities Rel 6 0 mergeback (#3597) 2022-05-16 22:08:27 +00:00
hapi-fhir-testpage-overlay Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-validation Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-validation-resources-dstu2 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-validation-resources-dstu2.1 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-validation-resources-dstu3 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-validation-resources-r4 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-fhir-validation-resources-r5 Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-tinder-plugin Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
hapi-tinder-test Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
osgi encode narratives of contained resources (#3402) 2022-02-17 18:54:03 +00:00
src Add error codes to all exceptions (#3278) 2022-01-31 13:10:15 -08:00
tests Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
vagrant Bump dependencies for CVES (#3359) 2022-02-07 07:56:25 -05:00
.editorconfig Add framework for Bulk Import (#2538) 2021-04-14 17:41:32 -04:00
.gitignore Merge CQL Initial Implementation Into master (#2330) 2021-01-29 16:35:38 -05:00
.whitesource Add .whitesource configuration file 2021-04-29 13:42:31 +00:00
HELPWANTED.md Work on custom params 2017-02-02 20:37:58 -05:00
LICENSE.txt Add license and notice files 2015-03-25 22:32:32 -04:00
LOINC_NOTES.txt More work on loinc 2018-03-19 08:51:02 -04:00
NOTICE.txt Add license and notice files 2015-03-25 22:32:32 -04:00
README.md Improve batch2 error handling (#3482) 2022-03-26 17:40:12 -04:00
azure-pipelines.yml Refactor to restore LGTM functionality (#3455) 2022-04-10 15:54:27 -04:00
check_for_maven_updates.sh Fix up examples 2014-09-03 18:03:44 -04:00
lgtm.yml Refactor to restore LGTM functionality (#3455) 2022-04-10 15:54:27 -04:00
list_releases.sh Implement handleException on the server interceptor framework, as well 2014-11-07 14:26:59 -05:00
mvnw Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
mvnw.cmd Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
pom.xml Update to 6 1 (#3582) 2022-05-03 20:34:25 +00:00
snapshot-pipeline.yml Bump compiler plugin (#3313) 2022-01-19 10:09:21 -05:00
sync.sh Update resource defs 2015-12-01 18:35:24 -05:00
sync_dstu3.sh Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-01 14:31:25 -04:00
sync_ri.sh Bump to 1.0.2 FHIR definitions 2015-11-15 12:22:56 -05:00
sync_ri3.fish Bring DSTU3 structs up to FHIR R3 2017-04-18 07:48:38 -04:00
sync_ri3.sh Syn RI - Build still failing :( 2016-05-28 12:53:59 -04:00
sync_ri4.sh Squashed commit of the following: 2018-12-27 17:58:47 -05:00
sync_ri5.sh Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
sync_ri21.sh Update model and definitions to latest definitions 2016-01-30 11:08:16 -05:00
update_version.sh Force another travis build 2015-08-05 10:38:38 -04:00

README.md

HAPI FHIR

HAPI FHIR - Java API for HL7 FHIR Clients and Servers

License

CI/CD

CI Status (master) SNAPSHOT Pipeline Current Release
Build Status Build Status Release Artifacts

Coverage and Quality

codecov Language grade: Java

Documentation and wiki

Complete project documentation is available here: http://hapifhir.io

A demonstration of this project is available here: http://hapi.fhir.org/

This project is Open Source, licensed under the Apache Software License 2.0.

Please see this wiki page for information on where to get help with HAPI FHIR.

Please see Smile CDR for information on commercial support.