Justin McKelvy 6a0b2794eb
5089 cr measure refactor (#5324)
* version bump

* Bump to core release 6.0.22 (#5028)

* Bump to core release 6.0.16

* Bump to core version 6.0.20

* Fix errors thrown as a result of VersionSpecificWorkerContextWrapper

* Bump to core 6.0.22

* Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127)

* dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID

* added changelog

* changed to valid version number

* changed to valid version number, need to be ordered by version number...

* 5123 - Use DEFAULT partition for server-based requests if none specified (#5124)

5123 - Use DEFAULT partition for server-based requests if none specified

* consent remove all suppresses next link in bundle (#5119)

* added FIXME with source of issue

* added FIXME with root cause

* added FIXME with root cause

* Providing solution to the issue and removing fixmes.

* Providing changelog

* auto-formatting.

* Adding new test.

* Adding a new test for standard paging

* let's try this and see if it works...?

* fix tests

* cleanup to trigger a new run

* fixing tests

---------

Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>

* 5117 MDM Score for No Match Fields Should Not Be Included in Total Score  (#5118)

* fix, test, changelog

* fix, test, changelog

---------

Co-authored-by: justindar <justin.dar@smilecdr.com>

* _source search parameter needs to support modifiers (#5095)

_source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers

* Fix HFQL docs (#5151)

* repository measure refactor

* undo bundle edit, add config

* embedded library true

* undo post of bundle

* clear library cache on test

* fix sumbit-data test

* missing packages from cql

* fix test data and test cases for repository api

* 3.0.0 clinical reasoning uplift

* r4 cql execution provider and tests

* fix submitdata provider config

* wip cql tests

* debugging cql op wip

* wip debugging cql

* update tests for $cql, fix class names

* prep for Pre6 uplift

* spotless checks and test fixes

* bump to 3.0.0-PRE6

* cleanup

* fix version

* cleanup

* fix exlusions in pom

* add in cache invalidation config

* search converter bug and test for repository

* update searchconverter

* version bump, add changelog

* remove term config, move IDaoRegistryUser class

* Break out dstu3 providers and move config to version folders

* CVE-2023-26119

* remove * imports

* code review updates

---------

Co-authored-by: tadgh <garygrantgraham@gmail.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com>
Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: justindar <justin.dar@smilecdr.com>
Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com>
Co-authored-by: Nathan Doef <n.doef@protonmail.com>
Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com>
Co-authored-by: Brenin Rhodes <brenin@alphora.com>
2023-09-22 16:51:36 -07:00

447 lines
16 KiB
XML

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.9.7-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<packaging>bundle</packaging>
<name>HAPI FHIR Structures - DSTU2 (FHIR v1.0.0)</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<!--
Test dependencies on other optional parts of HAPI
-->
<dependency>
<groupId>com.fasterxml.woodstox</groupId>
<artifactId>woodstox-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<version>${project.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-client</artifactId>
<version>${project.version}</version>
<optional>true</optional>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-server</artifactId>
<version>${project.version}</version>
<optional>true</optional>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<scope>provided</scope>
</dependency>
<!-- Testing -->
<!-- <dependency> <groupId>ca.uhn.hapi.fhir</groupId> <artifactId>hapi-fhir-structures-dstu</artifactId> <version>0.8</version> <scope>test</scope> </dependency> -->
<dependency>
<groupId>org.xmlunit</groupId>
<artifactId>xmlunit-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-http</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<optional>true</optional>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-test-utilities</artifactId>
<version>${project.version}</version>
<scope>test</scope>
</dependency>
<!-- Dependencies for Schematron -->
<dependency>
<groupId>com.helger</groupId>
<artifactId>ph-schematron</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>javax.activation</groupId>
<artifactId>javax.activation-api</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-runtime</artifactId>
<scope>test</scope>
</dependency>
<!-- UNIT TEST DEPENDENCIES -->
<dependency>
<groupId>org.junit-pioneer</groupId>
<artifactId>junit-pioneer</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>net.sf.json-lib</groupId>
<artifactId>json-lib</artifactId>
<!-- <version>2.4</version> -->
<classifier>jdk15</classifier>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
<exclusion>
<artifactId>commons-lang</artifactId>
<groupId>commons-lang</groupId>
</exclusion><!-- <exclusion> <artifactId>ezmorph</artifactId> <groupId>net.sf.ezmorph</groupId> </exclusion> -->
</exclusions>
</dependency>
<dependency>
<groupId>net.sf.json-lib</groupId>
<artifactId>json-lib</artifactId>
<!-- <version>2.4</version> -->
<classifier>jdk15-sources</classifier>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
<exclusion>
<artifactId>commons-lang</artifactId>
<groupId>commons-lang</groupId>
</exclusion><!-- <exclusion> <artifactId>ezmorph</artifactId> <groupId>net.sf.ezmorph</groupId> </exclusion> -->
</exclusions>
</dependency>
<dependency>
<artifactId>commons-lang</artifactId>
<groupId>commons-lang</groupId>
<version>2.5</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>directory-naming</groupId>
<artifactId>naming-java</artifactId>
<!-- <version>0.8</version> -->
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.awaitility</groupId>
<artifactId>awaitility</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
</plugin>
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>${project.version}</version>
<executions>
<execution>
<id>generate</id>
<goals>
<goal>generate-structures</goal>
</goals>
<configuration>
<baseResourceNames>
<baseResourceName>account</baseResourceName>
<baseResourceName>allergyintolerance</baseResourceName>
<baseResourceName>appointment</baseResourceName>
<baseResourceName>appointmentresponse</baseResourceName>
<baseResourceName>auditevent</baseResourceName>
<baseResourceName>basic</baseResourceName>
<baseResourceName>binary</baseResourceName>
<baseResourceName>bodysite</baseResourceName>
<baseResourceName>bundle</baseResourceName>
<baseResourceName>careplan</baseResourceName>
<baseResourceName>claim</baseResourceName>
<baseResourceName>claimresponse</baseResourceName>
<baseResourceName>clinicalimpression</baseResourceName>
<baseResourceName>communication</baseResourceName>
<baseResourceName>communicationrequest</baseResourceName>
<baseResourceName>composition</baseResourceName>
<baseResourceName>conceptmap</baseResourceName>
<baseResourceName>condition</baseResourceName>
<baseResourceName>conformance</baseResourceName>
<baseResourceName>contract</baseResourceName>
<baseResourceName>coverage</baseResourceName>
<baseResourceName>dataelement</baseResourceName>
<baseResourceName>detectedissue</baseResourceName>
<baseResourceName>device</baseResourceName>
<baseResourceName>devicecomponent</baseResourceName>
<baseResourceName>devicemetric</baseResourceName>
<baseResourceName>deviceuserequest</baseResourceName>
<baseResourceName>deviceusestatement</baseResourceName>
<baseResourceName>diagnosticorder</baseResourceName>
<baseResourceName>diagnosticreport</baseResourceName>
<!-- This is not a real resource <baseResourceName>documentation</baseResourceName> -->
<baseResourceName>documentmanifest</baseResourceName>
<baseResourceName>documentreference</baseResourceName>
<baseResourceName>eligibilityrequest</baseResourceName>
<baseResourceName>eligibilityresponse</baseResourceName>
<baseResourceName>encounter</baseResourceName>
<baseResourceName>enrollmentrequest</baseResourceName>
<baseResourceName>enrollmentresponse</baseResourceName>
<baseResourceName>episodeofcare</baseResourceName>
<baseResourceName>explanationofbenefit</baseResourceName>
<baseResourceName>familymemberhistory</baseResourceName>
<baseResourceName>flag</baseResourceName>
<baseResourceName>goal</baseResourceName>
<baseResourceName>group</baseResourceName>
<baseResourceName>healthcareservice</baseResourceName>
<baseResourceName>imagingobjectselection</baseResourceName>
<baseResourceName>imagingstudy</baseResourceName>
<baseResourceName>immunization</baseResourceName>
<baseResourceName>immunizationrecommendation</baseResourceName>
<baseResourceName>implementationguide</baseResourceName>
<baseResourceName>list</baseResourceName>
<baseResourceName>location</baseResourceName>
<baseResourceName>media</baseResourceName>
<baseResourceName>medication</baseResourceName>
<baseResourceName>medicationadministration</baseResourceName>
<baseResourceName>medicationdispense</baseResourceName>
<baseResourceName>medicationorder</baseResourceName>
<baseResourceName>medicationstatement</baseResourceName>
<baseResourceName>messageheader</baseResourceName>
<baseResourceName>namingsystem</baseResourceName>
<baseResourceName>nutritionorder</baseResourceName>
<baseResourceName>observation</baseResourceName>
<baseResourceName>operationdefinition</baseResourceName>
<baseResourceName>operationoutcome</baseResourceName>
<baseResourceName>order</baseResourceName>
<baseResourceName>orderresponse</baseResourceName>
<baseResourceName>organization</baseResourceName>
<baseResourceName>parameters</baseResourceName>
<baseResourceName>patient</baseResourceName>
<baseResourceName>paymentnotice</baseResourceName>
<baseResourceName>paymentreconciliation</baseResourceName>
<baseResourceName>person</baseResourceName>
<baseResourceName>practitioner</baseResourceName>
<baseResourceName>procedure</baseResourceName>
<baseResourceName>procedurerequest</baseResourceName>
<baseResourceName>processrequest</baseResourceName>
<baseResourceName>processresponse</baseResourceName>
<baseResourceName>provenance</baseResourceName>
<baseResourceName>questionnaire</baseResourceName>
<baseResourceName>questionnaireresponse</baseResourceName>
<baseResourceName>referralrequest</baseResourceName>
<baseResourceName>relatedperson</baseResourceName>
<baseResourceName>riskassessment</baseResourceName>
<baseResourceName>schedule</baseResourceName>
<baseResourceName>searchparameter</baseResourceName>
<baseResourceName>slot</baseResourceName>
<baseResourceName>specimen</baseResourceName>
<baseResourceName>structuredefinition</baseResourceName>
<baseResourceName>subscription</baseResourceName>
<baseResourceName>substance</baseResourceName>
<baseResourceName>supplydelivery</baseResourceName>
<baseResourceName>supplyrequest</baseResourceName>
<!--
Removed in HAPI 2.4 as this isn't a real resource
<baseResourceName>supportingdocumentation</baseResourceName>
<baseResourceName>test</baseResourceName>
-->
<baseResourceName>testscript</baseResourceName>
<!-- Removed in HAPI 3.4.0 as this isn't a real resource
<baseResourceName>user</baseResourceName>
-->
<baseResourceName>valueset</baseResourceName>
<baseResourceName>visionprescription</baseResourceName>
</baseResourceNames>
<package>ca.uhn.fhir.model.dstu2</package>
<version>dstu2</version>
<buildDatatypes>true</buildDatatypes>
<packageName>ca.uhn.fhir.model.dstu2</packageName>
</configuration>
</execution>
<!-- <execution> <id>clean_source</id> <goals> <goal>minimize-resources</goal> </goals> <configuration> <fhirVersion>DSTU2</fhirVersion> <targetDirectory>${project.baseDir}/../hapi-tinder-plugin/</targetDirectory>
</configuration> </execution> -->
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<id>add-source</id>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>target/generated-sources/tinder</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<extensions>true</extensions>
<configuration>
<instructions>
<_nouses>true</_nouses>
<_removeheaders>Built-By, Include-Resource, Private-Package, Require-Capability</_removeheaders>
<!-- No need to disable normal OSGi class loading
<Fragment-Host>
ca.uhn.hapi.fhir.hapi-fhir-base
</Fragment-Host>
-->
<Import-Package>
javax.servlet*;resolution:=optional,
*
</Import-Package>
</instructions>
</configuration>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<versionRange>[0.4-SNAPSHOT,)</versionRange>
<goals>
<goal>generate-structures</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<resources>
<resource>
<directory>${basedir}/src/main/resources</directory>
</resource>
<resource>
<directory>${basedir}/target/generated-resources/tinder</directory>
</resource>
</resources>
</build>
<profiles>
<profile>
<id>CI</id>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>animal-sniffer-maven-plugin</artifactId>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<configuration>
</configuration>
</plugin>
</plugins>
</reporting>
</project>