James Agnew 72294fc0a0
Suport typeFilter parameter for bulk export (#2147)
* Cleanup

* Fix tests

* Work on bulk export

* Work on export

* Test fixes

* Add changelog

* Address review comments

* Address review comments
2020-10-26 12:28:07 -04:00

517 lines
14 KiB
Java

package ca.uhn.fhir.util;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import com.google.common.escape.Escaper;
import com.google.common.net.PercentEscaper;
import org.apache.http.NameValuePair;
import org.apache.http.client.utils.URLEncodedUtils;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import javax.annotation.Nonnull;
import java.io.UnsupportedEncodingException;
import java.net.MalformedURLException;
import java.net.URL;
import java.net.URLDecoder;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.StringTokenizer;
import java.util.stream.Collectors;
import static org.apache.commons.lang3.StringUtils.defaultIfBlank;
import static org.apache.commons.lang3.StringUtils.defaultString;
import static org.apache.commons.lang3.StringUtils.isBlank;
/*
* #%L
* HAPI FHIR - Core Library
* %%
* Copyright (C) 2014 - 2020 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
public class UrlUtil {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(UrlUtil.class);
private static final String URL_FORM_PARAMETER_OTHER_SAFE_CHARS = "-_.*";
private static final Escaper PARAMETER_ESCAPER = new PercentEscaper(URL_FORM_PARAMETER_OTHER_SAFE_CHARS, false);
public static class UrlParts {
private String myParams;
private String myResourceId;
private String myResourceType;
private String myVersionId;
public String getParams() {
return myParams;
}
public void setParams(String theParams) {
myParams = theParams;
}
public String getResourceId() {
return myResourceId;
}
public void setResourceId(String theResourceId) {
myResourceId = theResourceId;
}
public String getResourceType() {
return myResourceType;
}
public void setResourceType(String theResourceType) {
myResourceType = theResourceType;
}
public String getVersionId() {
return myVersionId;
}
public void setVersionId(String theVersionId) {
myVersionId = theVersionId;
}
}
/**
* Resolve a relative URL - THIS METHOD WILL NOT FAIL but will log a warning and return theEndpoint if the input is invalid.
*/
public static String constructAbsoluteUrl(String theBase, String theEndpoint) {
if (theEndpoint == null) {
return null;
}
if (isAbsolute(theEndpoint)) {
return theEndpoint;
}
if (theBase == null) {
return theEndpoint;
}
try {
return new URL(new URL(theBase), theEndpoint).toString();
} catch (MalformedURLException e) {
ourLog.warn("Failed to resolve relative URL[" + theEndpoint + "] against absolute base[" + theBase + "]", e);
return theEndpoint;
}
}
public static String constructRelativeUrl(String theParentExtensionUrl, String theExtensionUrl) {
if (theParentExtensionUrl == null) {
return theExtensionUrl;
}
if (theExtensionUrl == null) {
return null;
}
int parentLastSlashIdx = theParentExtensionUrl.lastIndexOf('/');
int childLastSlashIdx = theExtensionUrl.lastIndexOf('/');
if (parentLastSlashIdx == -1 || childLastSlashIdx == -1) {
return theExtensionUrl;
}
if (parentLastSlashIdx != childLastSlashIdx) {
return theExtensionUrl;
}
if (!theParentExtensionUrl.substring(0, parentLastSlashIdx).equals(theExtensionUrl.substring(0, parentLastSlashIdx))) {
return theExtensionUrl;
}
if (theExtensionUrl.length() > parentLastSlashIdx) {
return theExtensionUrl.substring(parentLastSlashIdx + 1);
}
return theExtensionUrl;
}
/**
* URL encode a value according to RFC 3986
* <p>
* This method is intended to be applied to an individual parameter
* name or value. For example, if you are creating the URL
* <code>http://example.com/fhir/Patient?key=føø</code>
* it would be appropriate to pass the string "føø" to this method,
* but not appropriate to pass the entire URL since characters
* such as "/" and "?" would also be escaped.
* </P>
*/
public static String escapeUrlParam(String theUnescaped) {
if (theUnescaped == null) {
return null;
}
return PARAMETER_ESCAPER.escape(theUnescaped);
}
/**
* Applies the same encodong as {@link #escapeUrlParam(String)} but against all
* values in a collection
*/
public static List<String> escapeUrlParams(@Nonnull Collection<String> theUnescaped) {
return theUnescaped
.stream()
.map(t -> PARAMETER_ESCAPER.escape(t))
.collect(Collectors.toList());
}
public static boolean isAbsolute(String theValue) {
String value = theValue.toLowerCase();
return value.startsWith("http://") || value.startsWith("https://");
}
public static boolean isNeedsSanitization(CharSequence theString) {
if (theString != null) {
for (int i = 0; i < theString.length(); i++) {
char nextChar = theString.charAt(i);
switch (nextChar) {
case '\'':
case '"':
case '<':
case '>':
case '\n':
case '\r':
return true;
}
if (nextChar < ' ') {
return true;
}
}
}
return false;
}
public static boolean isValid(String theUrl) {
if (theUrl == null || theUrl.length() < 8) {
return false;
}
String url = theUrl.toLowerCase();
if (url.charAt(0) != 'h') {
return false;
}
if (url.charAt(1) != 't') {
return false;
}
if (url.charAt(2) != 't') {
return false;
}
if (url.charAt(3) != 'p') {
return false;
}
int slashOffset;
if (url.charAt(4) == ':') {
slashOffset = 5;
} else if (url.charAt(4) == 's') {
if (url.charAt(5) != ':') {
return false;
}
slashOffset = 6;
} else {
return false;
}
if (url.charAt(slashOffset) != '/') {
return false;
}
if (url.charAt(slashOffset + 1) != '/') {
return false;
}
return true;
}
public static RuntimeResourceDefinition parseUrlResourceType(FhirContext theCtx, String theUrl) throws DataFormatException {
int paramIndex = theUrl.indexOf('?');
String resourceName = theUrl.substring(0, paramIndex);
if (resourceName.contains("/")) {
resourceName = resourceName.substring(resourceName.lastIndexOf('/') + 1);
}
return theCtx.getResourceDefinition(resourceName);
}
public static Map<String, String[]> parseQueryString(String theQueryString) {
HashMap<String, List<String>> map = new HashMap<>();
parseQueryString(theQueryString, map);
return toQueryStringMap(map);
}
private static void parseQueryString(String theQueryString, HashMap<String, List<String>> map) {
String query = defaultString(theQueryString);
if (query.startsWith("?")) {
query = query.substring(1);
}
StringTokenizer tok = new StringTokenizer(query, "&");
while (tok.hasMoreTokens()) {
String nextToken = tok.nextToken();
if (isBlank(nextToken)) {
continue;
}
int equalsIndex = nextToken.indexOf('=');
String nextValue;
String nextKey;
if (equalsIndex == -1) {
nextKey = nextToken;
nextValue = "";
} else {
nextKey = nextToken.substring(0, equalsIndex);
nextValue = nextToken.substring(equalsIndex + 1);
}
nextKey = unescape(nextKey);
nextValue = unescape(nextValue);
List<String> list = map.computeIfAbsent(nextKey, k -> new ArrayList<>());
list.add(nextValue);
}
}
public static Map<String, String[]> parseQueryStrings(String... theQueryString) {
HashMap<String, List<String>> map = new HashMap<>();
for (String next : theQueryString) {
parseQueryString(next, map);
}
return toQueryStringMap(map);
}
/**
* Parse a URL in one of the following forms:
* <ul>
* <li>[Resource Type]?[Search Params]
* <li>[Resource Type]/[Resource ID]
* <li>[Resource Type]/[Resource ID]/_history/[Version ID]
* </ul>
*/
public static UrlParts parseUrl(String theUrl) {
String url = theUrl;
UrlParts retVal = new UrlParts();
if (url.startsWith("http")) {
if (url.startsWith("/")) {
url = url.substring(1);
}
int qmIdx = url.indexOf('?');
if (qmIdx != -1) {
retVal.setParams(defaultIfBlank(url.substring(qmIdx + 1), null));
url = url.substring(0, qmIdx);
}
IdDt id = new IdDt(url);
retVal.setResourceType(id.getResourceType());
retVal.setResourceId(id.getIdPart());
retVal.setVersionId(id.getVersionIdPart());
return retVal;
}
int parsingStart = 0;
if (url.length() > 2) {
if (url.charAt(0) == '/') {
if (Character.isLetter(url.charAt(1))) {
parsingStart = 1;
}
}
}
if (url.length() > 1 && url.charAt(0) == '/' && Character.isLetter(url.charAt(1)) && url.contains("?")) {
url = url.substring(1);
}
int nextStart = 0;
boolean nextIsHistory = false;
for (int idx = parsingStart; idx < url.length(); idx++) {
char nextChar = url.charAt(idx);
boolean atEnd = (idx + 1) == url.length();
if (nextChar == '?' || nextChar == '/' || atEnd) {
int endIdx = (atEnd && nextChar != '?') ? idx + 1 : idx;
String nextSubstring = url.substring(nextStart, endIdx);
if (retVal.getResourceType() == null) {
retVal.setResourceType(nextSubstring);
} else if (retVal.getResourceId() == null) {
retVal.setResourceId(nextSubstring);
} else if (nextIsHistory) {
retVal.setVersionId(nextSubstring);
} else {
if (nextSubstring.equals(Constants.URL_TOKEN_HISTORY)) {
nextIsHistory = true;
} else {
throw new InvalidRequestException("Invalid FHIR resource URL: " + url);
}
}
if (nextChar == '?') {
if (url.length() > idx + 1) {
retVal.setParams(url.substring(idx + 1));
}
break;
}
nextStart = idx + 1;
}
}
return retVal;
}
/**
* This method specifically HTML-encodes the &quot; and
* &lt; characters in order to prevent injection attacks
*/
public static String sanitizeUrlPart(IPrimitiveType<?> theString) {
String retVal = null;
if (theString != null) {
retVal = sanitizeUrlPart(theString.getValueAsString());
}
return retVal;
}
/**
* This method specifically HTML-encodes the &quot; and
* &lt; characters in order to prevent injection attacks.
* <p>
* The following characters are escaped:
* <ul>
* <li>&apos;</li>
* <li>&quot;</li>
* <li>&lt;</li>
* <li>&gt;</li>
* <li>\n (newline)</li>
* </ul>
*/
public static String sanitizeUrlPart(CharSequence theString) {
if (theString == null) {
return null;
}
boolean needsSanitization = isNeedsSanitization(theString);
if (needsSanitization) {
// Ok, we're sanitizing
StringBuilder buffer = new StringBuilder(theString.length() + 10);
for (int j = 0; j < theString.length(); j++) {
char nextChar = theString.charAt(j);
switch (nextChar) {
/*
* NB: If you add a constant here, you also need to add it
* to isNeedsSanitization()!!
*/
case '\'':
buffer.append("&apos;");
break;
case '"':
buffer.append("&quot;");
break;
case '<':
buffer.append("&lt;");
break;
case '>':
buffer.append("&gt;");
break;
case '\n':
buffer.append("&#10;");
break;
case '\r':
buffer.append("&#13;");
break;
default:
if (nextChar >= ' ') {
buffer.append(nextChar);
}
break;
}
} // for build escaped string
return buffer.toString();
}
return theString.toString();
}
/**
* Applies the same logic as {@link #sanitizeUrlPart(CharSequence)} but against an array, returning an array with the
* same strings as the input but with sanitization applied
*/
public static String[] sanitizeUrlPart(String[] theParameterValues) {
String[] retVal = null;
if (theParameterValues != null) {
retVal = new String[theParameterValues.length];
for (int i = 0; i < theParameterValues.length; i++) {
retVal[i] = sanitizeUrlPart(theParameterValues[i]);
}
}
return retVal;
}
private static Map<String, String[]> toQueryStringMap(HashMap<String, List<String>> map) {
HashMap<String, String[]> retVal = new HashMap<>();
for (Entry<String, List<String>> nextEntry : map.entrySet()) {
retVal.put(nextEntry.getKey(), nextEntry.getValue().toArray(new String[0]));
}
return retVal;
}
public static String unescape(String theString) {
if (theString == null) {
return null;
}
for (int i = 0; i < theString.length(); i++) {
char nextChar = theString.charAt(i);
if (nextChar == '%' || nextChar == '+') {
try {
// Yes it would be nice to not use a string "UTF-8" but the equivalent
// method that takes Charset is JDK10+ only... sigh....
return URLDecoder.decode(theString, "UTF-8");
} catch (UnsupportedEncodingException e) {
throw new Error("UTF-8 not supported, this shouldn't happen", e);
}
}
}
return theString;
}
public static List<NameValuePair> translateMatchUrl(String theMatchUrl) {
List<NameValuePair> parameters;
String matchUrl = theMatchUrl;
int questionMarkIndex = matchUrl.indexOf('?');
if (questionMarkIndex != -1) {
matchUrl = matchUrl.substring(questionMarkIndex + 1);
}
matchUrl = matchUrl.replace("|", "%7C");
matchUrl = matchUrl.replace("=>=", "=%3E%3D");
matchUrl = matchUrl.replace("=<=", "=%3C%3D");
matchUrl = matchUrl.replace("=>", "=%3E");
matchUrl = matchUrl.replace("=<", "=%3C");
if (matchUrl.contains(" ")) {
throw new InvalidRequestException("Failed to parse match URL[" + theMatchUrl + "] - URL is invalid (must not contain spaces)");
}
parameters = URLEncodedUtils.parse((matchUrl), Constants.CHARSET_UTF8, '&');
return parameters;
}
}