🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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Justin McKelvy 8c48a6fb91
Clinical reasoning module (#4347)
* Add new Clinical Reasoning module

* Add config to get test up and running

* Removed FhirClient from tests

* First passing test

* Remove unused utilities

* Build updates

* exclude xxp3 and substitute with unbundled version

* Refactor to use provider factory and loader pattern

* First passing dstu3 test

* CR r4 test config and immunization tests

* Add base test classes

* Exclude transitive dependency xmlpull

* More dependency cleanup

* Refactor to remove JPA dependencies, rename module to hapi-fhir-storage-cr

* Fixes for duplicate xpp3 classes

* Remove more references to jpa

* Add mock FHIR server for terminology endpoint tests

* fix cql file for making providerr4 tests pass

* fix pom

* fix generic

* Adding r4 test cases for measure operations.

* Fix endpoint tests

* javadoc comment, temporarily comment out test results for practitioner sync

* javadoc typo fix

* adding java docs for cr module WIP

* Updates to clinical reasoning documentation

* More documentation updates

* docs now compile

* fix test

* DqmR4IT now successfully starts up, but the test does not pass

* Fix additionalData test

* Make measure service bean overridable

* adding clinical reasoning javadoc information

* Rename interfaces to start with I

* More styleguide updates

* Reformat all code in the storage-cr module

* More coding convention updates

* Remove bunches of unused code, reogranize so that fhir version in package name is consistent

* Clean up some static array initializations

* add practitioner patient list

* refactor product-line constant

* test dependency update

* add change log for cr module

* Add hapi-validation to the pom

* Exclude dependencies that are causing duplicates

* More dependencies and exclusions

* Make some base MeasureService components protected

* Update to latest cql compiler release

* fix measure service for null subject & practitioner and open up practitioner test

* Rev to release versions

* Add remaining Dstu3 tests

* update hedis bundle from policyHolder to beneficiary

* update snapshot

* Delete old CQL module

* Post-master-merge recovery

* Fix Java 17 feature usage issue

* update changelog with more information about new functionality

* Remove support chain wrapper usage

* Add javadocs to IResourceLoader

* added the property versioning for antlr jar.

* addressing code review comments.

* addressing code review comments.

* Fix typos in changelog

* Remove azure pipeline for cql module, add it for cr module

* Address exception comments, add Msg.code calls to exceptions

* Fix self-assignment bug

* Add storage-cr module to bom

* addressing coding comments.

* Addressed the variable naming convention to camelCase.

* Snapshot version bump

Co-authored-by: Brenin Rhodes <brenin@alphora.com>
Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com>
Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: Chalma Maadaadi <chalma@alphora.com>
Co-authored-by: mdnazmulkarim <nazmul.karim@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2023-01-10 19:49:57 +00:00
.github bump compiler settings. JDK 11 for prod, JDK 17 for tests (#3435) 2022-02-28 21:51:32 +00:00
.mvn/wrapper Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
.mvn_/wrapper Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
hapi-deployable-pom Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-android Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-android-realm Work on JPA 2017-02-02 06:23:28 -05:00
hapi-fhir-base Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-bom Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-checkstyle Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-cli Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-client Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-client-okhttp Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-converter Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-dist Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-docs Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jacoco Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jaxrsserver-base Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpa Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-base Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-elastic-test-utilities Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-mdm Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-model Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-searchparam Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-subscription Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-test-dstu2 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-test-dstu3 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-test-r4 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-test-r4b Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-test-r5 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-test-utilities Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-jpaserver-uhnfhirtest Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-server Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-server-mdm Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-server-openapi Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-serviceloaders Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-spring-boot Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-sql-migrate Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-storage Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-storage-batch2 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-storage-batch2-jobs Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-storage-cr Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-storage-mdm Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-storage-test-utilities Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-structures-dstu2 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-structures-dstu2.1 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-structures-dstu3 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-structures-hl7org-dstu2 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-structures-r4 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-structures-r4b Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-structures-r5 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-test-utilities Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-testpage-overlay Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-validation Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-validation-resources-dstu2 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-validation-resources-dstu2.1 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-validation-resources-dstu3 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-validation-resources-r4 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-fhir-validation-resources-r5 Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-tinder-plugin Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
hapi-tinder-test Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
osgi encode narratives of contained resources (#3402) 2022-02-17 18:54:03 +00:00
src Rel 6 2 4 mergeback (#4406) 2023-01-06 03:45:22 +00:00
tests Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
vagrant Bump dependencies for CVES (#3359) 2022-02-07 07:56:25 -05:00
.editorconfig Add framework for Bulk Import (#2538) 2021-04-14 17:41:32 -04:00
.gitignore ValueSet cleanup (#4227) 2022-11-08 22:18:36 -05:00
.whitesource Add .whitesource configuration file 2021-04-29 13:42:31 +00:00
HELPWANTED.md Work on custom params 2017-02-02 20:37:58 -05:00
LICENSE.txt Add license and notice files 2015-03-25 22:32:32 -04:00
LOINC_NOTES.txt More work on loinc 2018-03-19 08:51:02 -04:00
NOTICE.txt Add license and notice files 2015-03-25 22:32:32 -04:00
README.md Improve batch2 error handling (#3482) 2022-03-26 17:40:12 -04:00
azure-pipelines.yml Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
check_for_maven_updates.sh Fix up examples 2014-09-03 18:03:44 -04:00
lgtm.yml code coverage needs to run only for JACOCO PROFILE (#4230) 2022-11-02 15:34:27 -04:00
list_releases.sh Implement handleException on the server interceptor framework, as well 2014-11-07 14:26:59 -05:00
mvnw Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
mvnw.cmd Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
pom.xml Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
release-pipeline.yml update to docker installer tool for azure broke docker in the latest version, pinning the version to previous one (#4335) 2022-12-06 18:32:42 -05:00
snapshot-pipeline.yml Fix release pipeline Originally Issue 4106 process map to properties when uploading loinc terminology (#4246) 2022-11-04 13:57:19 -07:00
sync.sh Update resource defs 2015-12-01 18:35:24 -05:00
sync_dstu3.sh Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-01 14:31:25 -04:00
sync_ri.sh Bump to 1.0.2 FHIR definitions 2015-11-15 12:22:56 -05:00
sync_ri3.fish Bring DSTU3 structs up to FHIR R3 2017-04-18 07:48:38 -04:00
sync_ri3.sh Syn RI - Build still failing :( 2016-05-28 12:53:59 -04:00
sync_ri4.sh Squashed commit of the following: 2018-12-27 17:58:47 -05:00
sync_ri5.sh Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
sync_ri21.sh Update model and definitions to latest definitions 2016-01-30 11:08:16 -05:00
test-job-template.yml update to docker installer tool for azure broke docker in the latest version, pinning the version to previous one (#4335) 2022-12-06 18:32:42 -05:00
update_version.sh Force another travis build 2015-08-05 10:38:38 -04:00

README.md

HAPI FHIR

HAPI FHIR - Java API for HL7 FHIR Clients and Servers

License

CI/CD

CI Status (master) SNAPSHOT Pipeline Current Release
Build Status Build Status Release Artifacts

Coverage and Quality

codecov Language grade: Java

Documentation and wiki

Complete project documentation is available here: http://hapifhir.io

A demonstration of this project is available here: http://hapi.fhir.org/

This project is Open Source, licensed under the Apache Software License 2.0.

Please see this wiki page for information on where to get help with HAPI FHIR.

Please see Smile CDR for information on commercial support.