mirror of
https://github.com/hapifhir/hapi-fhir.git
synced 2025-02-14 17:05:04 +00:00
* pom bump to 7.0.0 (#5615) * pom bump to 7.0.0 * add version enum * fixed feb release name --------- Co-authored-by: Long Ma <long@smilecdr.com> * Check index existence on raw SQL creation (#5624) * Add conditional check on index existence before we try again * Add conditional check on index existence before we try again * Changelog * remit * remit * debug statements * 5621 deadlock on caffeine cache when creating a resource with conditional create (#5622) * Modifying the CacheProvider to avoid doing db I/O within the cache miss value supplier callback. * Setting the initial capacity of instantiated caches to the cache max size to avoid resizing during operations. * adding changelog and spotless. * Fixing typo. * Addressing comments from code review. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Searching with more than one chained Bundle SearchParameter returns incorrect results (#5614) * Failing test * fix * changelog * Avoiding Exception being thrown on @EventListener invocation (#5628) * replaced EventListener annotation with @PreDestroy * adding changelog --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * simple fix (#5630) Co-authored-by: Long Ma <long@smilecdr.com> * Incorrect version of auto versioned reference for conditional update with urn id placeholder (#5625) * Incorrect version from versioned_references.auto_at_paths for conditional update - implementation * Oracle: Ensure migrated database still takes large resource text updates (#5629) * First pass at fix to Oracle HFJ_RES_VER.RES_TEXT_VC migration. * First stab at agreed upon solution. * Fix error with 4001 by removing unnecessary annotation. * Spotless and TODO. * Remove annotation for good and set length to LONG32. * Fix copyright year. * Finalize changelog. * Remove migration changes. Fix unit test. * Fix compile error. * Log output. * Refactor resource history code into new ResourceHistoryCalculator. * Spotless. * Convert record to POJO. * Restore pre-17 switch statement. * Finalize new resource history calculator code and tests. * Spotless. * Remove logging. * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_0_0/5633-oracle-hfj-res-ver-clob-migration.yaml Apply code reviewer suggestion Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * Code review feedback. --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * Fix expansion for `ValueSet` with no concepts based on CodeSystem `urn:ietf:bcp:13` (#5638) * When fetching the mimetype code system, return empty CodeSystem with NOTSUPPORTED content. Update expansion logic to handle this case. Add some test cases. * Minor change to fix test * Rename changelog file * Remove TODOs as they're replaced by reported issue * Revert accidental change added with TODO removal * $expunge operation ignoring ExpungeThreadCount setting in certain cases (#5637) * $expunge operation ignoring ExpungeThreadCount setting in certain cases - implementation * Fix Measure group id null pointer exception (#5620) * Update to new version of clinical reasoning, includes a fix for null pointers on Measure group id * add changelog --------- Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> * Rule evaluation: Allow Bundles with PATCH Parameters (#5641) * Remove parameters clause. * Finalize changelog. Add tests. Finalize implementation. * Undo changes to this test. * Revert all changes to FhirQueryRuleImplTest. Add new RuleImplOpTest. Ensure that proper nested Bundle is created for test and other fixes. * Tweak test. * Use real rule applier in test and remove all mocks. * Prevent batch2 job execution to stop for empty chunk when last job st… (#5635) * Prevent batch2 job execution to stop for empty chunk when last job step is a reduction. Add output to bulk export result even when empty. * Fix test * Unimportant change to force fresh build * Implement review suggestions --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Index review fixes (#5649) * Don't hold locks while adding indices during upgrade. * concurrent indexing is non-transactional in PG. * Fix conditional creates without leading '?' (#5646) * First commit with failing test. * More tests and logs. * More logs * Try new solution for BaseTransactionProcessor.performIdSubstitutionsInMatchUrl(). * Simplify solution. Add more tests. * Changelog. * javadoc * Searching for Bundles with read all Bundles permission returns 403 (#5644) * failing test * another failing test case * fix * changelog * fix bug * spotless * cr * Fix NullPointerException when performing a system bulk export in the presence of PatientIdPartitionInterceptor. (#5660) * Serializing changes for sensitive data (#5655) * Add new senstiive data serializer * Add new senstiive data serializer * Add new senstiive data serializer * Remove dead comments * Change up the test * review comments * wip * Tighten tests and push annotation down * Tighten tests and push annotation down * Changelog * Add test * 7.0.1-SNAPSHOT bump * Error code * Add method used by CDR * add version enum * Fix test * Rel 7 0 CVE (#5663) * Bump json-path * Pin parrson * Bump elastic * Bump spring version * Exclude JDBC * Descendent fix (#5669) * Fix "is-a" ValueSet expansion, add "descendent-of" support * Fixed tests in DSTU3 and R5 * Trigger new build * Revert "Trigger new build" This reverts commit 46c672b338db1f85c4f438344bfa828bfc723a37. * fix default partition setting on resource (#5617) * fix default partition setting on resource * changelog * Handle DEFAULT partition in rule checker. * Fix spotless --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> * pom bump, doc add, version enum add (#5616) Co-authored-by: Long Ma <long@smilecdr.com> * fix default partition setting on resource (#5618) * fix default partition setting on resource * Handle DEFAULT partition in rule checker. Co-authored-by: Ken Stevens <khstevens@gmail.com> * Add setting to make broker not use JacksonMessageConverter (#5611) * Add setting to make broker not use JacksonMessageConverter * Add changelog * Implement suggestions --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Fix version * add changelog, add attribution, remove accidental bring-overs * add changelog, add attribution, remove accidental bring-overs * Finish jira section --------- Co-authored-by: Ole Hedegaard <ohe@trifork.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * fix conflict mistake * removed test assert that is no longer true: * version bumpb to 7.1.1 * fix version Enum test --------- Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: Martha Mitran <martha.mitran@smilecdr.com> Co-authored-by: JP <jonathan.i.percival@gmail.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Ole Hedegaard <ohe@trifork.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com>
245 lines
6.4 KiB
XML
245 lines
6.4 KiB
XML
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
|
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
|
|
<modelVersion>4.0.0</modelVersion>
|
|
|
|
<parent>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir</artifactId>
|
|
<version>7.1.1-SNAPSHOT</version>
|
|
|
|
<relativePath>../pom.xml</relativePath>
|
|
</parent>
|
|
|
|
<artifactId>hapi-fhir-jpaserver-uhnfhirtest</artifactId>
|
|
<packaging>jar</packaging>
|
|
|
|
<name>HAPI FHIR - fhirtest.uhn.ca Deployable WAR</name>
|
|
|
|
<dependencies>
|
|
<dependency>
|
|
<groupId>org.postgresql</groupId>
|
|
<artifactId>postgresql</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-jpaserver-base</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-dstu2</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-testpage-overlay</artifactId>
|
|
<version>${project.version}</version>
|
|
<type>war</type>
|
|
<scope>provided</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-testpage-overlay</artifactId>
|
|
<version>${project.version}</version>
|
|
<classifier>classes</classifier>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-server-openapi</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-jpaserver-ips</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-jpaserver-hfql</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>org.springframework</groupId>
|
|
<artifactId>spring-web</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>org.thymeleaf</groupId>
|
|
<artifactId>thymeleaf</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ch.qos.logback</groupId>
|
|
<artifactId>logback-classic</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>jcl-over-slf4j</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.slf4j</groupId>
|
|
<artifactId>slf4j-api</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>com.google.guava</groupId>
|
|
<artifactId>guava</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>jakarta.servlet</groupId>
|
|
<artifactId>jakarta.servlet-api</artifactId>
|
|
<scope>provided</scope>
|
|
</dependency>
|
|
|
|
<!-- TEST DEPS -->
|
|
<dependency>
|
|
<groupId>com.h2database</groupId>
|
|
<artifactId>h2</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.apache.jena</groupId>
|
|
<artifactId>apache-jena-libs</artifactId>
|
|
<type>pom</type>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>com.github.jsonld-java</groupId>
|
|
<artifactId>jsonld-java</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
</dependency>
|
|
|
|
<!--
|
|
<dependency>
|
|
<groupId>commons-dbcp</groupId>
|
|
<artifactId>commons-dbcp</artifactId>
|
|
<version>1.4</version>
|
|
</dependency>
|
|
-->
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-dbcp2</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-converter</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-test-utilities</artifactId>
|
|
<scope>test</scope>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
|
|
</dependencies>
|
|
|
|
|
|
<build>
|
|
<pluginManagement>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.eclipse.jetty</groupId>
|
|
<artifactId>jetty-maven-plugin</artifactId>
|
|
<configuration>
|
|
<webApp>
|
|
<contextPath>/</contextPath>
|
|
<allowDuplicateFragmentNames>true</allowDuplicateFragmentNames>
|
|
</webApp>
|
|
</configuration>
|
|
</plugin>
|
|
<!--This plugin's configuration is used to store Eclipse m2e settings
|
|
only. It has no influence on the Maven build itself. -->
|
|
<plugin>
|
|
<groupId>org.eclipse.m2e</groupId>
|
|
<artifactId>lifecycle-mapping</artifactId>
|
|
<version>1.0.0</version>
|
|
<configuration>
|
|
<lifecycleMappingMetadata>
|
|
<pluginExecutions>
|
|
<pluginExecution>
|
|
<pluginExecutionFilter>
|
|
<groupId></groupId>
|
|
<artifactId></artifactId>
|
|
<versionRange>[0.4,)</versionRange>
|
|
<goals>
|
|
<goal></goal>
|
|
</goals>
|
|
</pluginExecutionFilter>
|
|
<action>
|
|
<ignore></ignore>
|
|
</action>
|
|
</pluginExecution>
|
|
</pluginExecutions>
|
|
</lifecycleMappingMetadata>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</pluginManagement>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.sonatype.plugins</groupId>
|
|
<artifactId>nexus-staging-maven-plugin</artifactId>
|
|
<configuration>
|
|
<skipRemoteStaging>true</skipRemoteStaging>
|
|
<skipLocalStaging>true</skipLocalStaging>
|
|
</configuration>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-deploy-plugin</artifactId>
|
|
<configuration>
|
|
<skip>true</skip>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
<finalName>hapi-fhir-jpaserver</finalName>
|
|
</build>
|
|
|
|
<profiles>
|
|
<profile>
|
|
<id>DIST</id>
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-war-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<goals>
|
|
<goal>war</goal>
|
|
</goals>
|
|
</execution>
|
|
</executions>
|
|
<configuration>
|
|
<archive>
|
|
<manifestEntries>
|
|
<Build-Time>${maven.build.timestamp}</Build-Time>
|
|
</manifestEntries>
|
|
</archive>
|
|
<overlays>
|
|
<overlay>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-testpage-overlay</artifactId>
|
|
<excludes>
|
|
<exclude>WEB-INF/classes/**/*.class</exclude>
|
|
</excludes>
|
|
</overlay>
|
|
</overlays>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
</profiles>
|
|
|
|
</project>
|