mirror of
https://github.com/hapifhir/hapi-fhir.git
synced 2025-02-10 23:14:51 +00:00
efc6809ea6
* Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
954 lines
26 KiB
XML
954 lines
26 KiB
XML
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>5.3.0-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
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<packaging>jar</packaging>
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<name>HAPI FHIR JPA Server</name>
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<dependencies>
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<!--
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<dependency>
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<groupId>com.fasterxml.jackson.jaxrs</groupId>
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<artifactId>jackson-jaxrs-json-provider</artifactId>
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<version>${jackson.version}</version>
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</dependency>
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<dependency>
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<groupId>com.fasterxml.jackson.datatype</groupId>
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<artifactId>jackson-datatype-hibernate4</artifactId>
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<version>${jackson.version}</version>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-lang3</artifactId>
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<version>3.5</version>
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</dependency>
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-->
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<dependency>
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<groupId>com.fasterxml.woodstox</groupId>
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<artifactId>woodstox-core</artifactId>
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</dependency>
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<dependency>
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<groupId>net.sf.saxon</groupId>
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<artifactId>Saxon-HE</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-csv</artifactId>
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</dependency>
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<dependency>
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<groupId>co.elastic.apm</groupId>
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<artifactId>apm-agent-api</artifactId>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-base</artifactId>
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<version>${project.version}</version>
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<exclusions>
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<exclusion>
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<artifactId>commons-logging</artifactId>
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<groupId>commons-logging</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-client</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server-mdm</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-subscription</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-searchparam</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-model</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu3</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r4</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r5</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r4</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r5</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-batch</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>net.ttddyy</groupId>
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<artifactId>datasource-proxy</artifactId>
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</dependency>
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<dependency>
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<groupId>ch.qos.logback</groupId>
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<artifactId>logback-classic</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.awaitility</groupId>
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<artifactId>awaitility</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.javassist</groupId>
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<artifactId>javassist</artifactId>
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</dependency>
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<!-- SQL Builder -->
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<dependency>
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<groupId>com.healthmarketscience.sqlbuilder</groupId>
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<artifactId>sqlbuilder</artifactId>
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</dependency>
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<!-- Jackson -->
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-annotations</artifactId>
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</dependency>
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-databind</artifactId>
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</dependency>
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<dependency>
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<groupId>io.swagger</groupId>
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<artifactId>swagger-annotations</artifactId>
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</dependency>
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<dependency>
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<groupId>com.helger</groupId>
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<artifactId>ph-schematron</artifactId>
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<scope>test</scope>
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<exclusions>
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<exclusion>
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<artifactId>Saxon-HE</artifactId>
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<groupId>net.sf.saxon</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>com.helger</groupId>
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<artifactId>ph-commons</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf</artifactId>
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</dependency>
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf-spring5</artifactId>
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</dependency>
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<!-- For UCUM: TODO we should replace this with org.fhir UCUM -->
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<dependency>
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<groupId>org.jscience</groupId>
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<artifactId>jscience</artifactId>
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<exclusions>
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<exclusion>
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<groupId>org.javolution</groupId>
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<artifactId>javolution</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<!-- Patch Dependencies -->
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<dependency>
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<groupId>io.dogote</groupId>
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<artifactId>json-patch</artifactId>
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</dependency>
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<dependency>
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<groupId>com.github.dnault</groupId>
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<artifactId>xml-patch</artifactId>
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</dependency>
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<!-- FHIR RI is pulled in for UCUM support, but we don't want any of its dependencies. -->
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<!--
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For some reason JavaDoc crashed during site generation unless we have this dependency
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-->
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<dependency>
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<groupId>javax.interceptor</groupId>
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<artifactId>javax.interceptor-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<!--
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Dependencies that need to be added since JDK9
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-->
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<dependency>
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<groupId>javax.annotation</groupId>
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<artifactId>javax.annotation-api</artifactId>
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</dependency>
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<!-- Test Database -->
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<dependency>
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<groupId>org.apache.derby</groupId>
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<artifactId>derby</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.apache.derby</groupId>
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<artifactId>derbytools</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>com.h2database</groupId>
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<artifactId>h2</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-dbcp2</artifactId>
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<scope>test</scope>
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<exclusions>
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<exclusion>
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<groupId>commons-logging</groupId>
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<artifactId>commons-logging</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-test-utilities</artifactId>
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<version>${project.version}</version>
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<scope>test</scope>
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</dependency>
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<!--
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<dependency>
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<groupId>org.apache.tomcat</groupId>
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<artifactId>tomcat-catalina</artifactId>
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<scope>test</scope>
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</dependency>
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-->
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<dependency>
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<groupId>javax.servlet</groupId>
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<artifactId>javax.servlet-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>org.quartz-scheduler</groupId>
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<artifactId>quartz</artifactId>
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</dependency>
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<!-- Spring -->
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-core</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>commons-logging</artifactId>
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<groupId>commons-logging</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-orm</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-context</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>xml-apis</artifactId>
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<groupId>xml-apis</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-beans</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework.data</groupId>
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<artifactId>spring-data-jpa</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>spring-aop</artifactId>
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<groupId>org.springframework</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-messaging</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-tx</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-context-support</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-webmvc</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-websocket</artifactId>
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</dependency>
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<!-- Hibernate -->
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-core</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>xml-apis</artifactId>
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<groupId>xml-apis</groupId>
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</exclusion>
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<exclusion>
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<groupId>javax.activation</groupId>
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<artifactId>javax.activation-api</artifactId>
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</exclusion>
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<!--<exclusion>-->
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<!--<groupId>org.jboss.spec.javax.transaction</groupId>-->
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<!--<artifactId>jboss-transaction-api_1.2_spec</artifactId>-->
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<!--</exclusion>-->
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-entitymanager</artifactId>
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<exclusions>
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<exclusion>
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<groupId>org.jboss.spec.javax.transaction</groupId>
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<artifactId>jboss-transaction-api_1.2_spec</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-java8</artifactId>
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<exclusions>
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<exclusion>
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<groupId>org.jboss.spec.javax.transaction</groupId>
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<artifactId>jboss-transaction-api_1.2_spec</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-ehcache</artifactId>
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<exclusions>
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<exclusion>
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<groupId>net.sf.ehcache</groupId>
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<artifactId>ehcache-core</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.hibernate.validator</groupId>
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<artifactId>hibernate-validator</artifactId>
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<exclusions>
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<exclusion>
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<groupId>com.fasterxml</groupId>
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<artifactId>classmate</artifactId>
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</exclusion>
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<exclusion>
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<groupId>org.jboss.logging</groupId>
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<artifactId>jboss-logging</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>com.sun.activation</groupId>
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<artifactId>javax.activation</artifactId>
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<version>1.2.0</version>
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</dependency>
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<dependency>
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<groupId>javax.mail</groupId>
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<artifactId>javax.mail-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>com.sun.mail</groupId>
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<artifactId>javax.mail</artifactId>
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<scope>provided</scope>
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<exclusions>
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<exclusion>
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<groupId>javax.activation</groupId>
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<artifactId>activation</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>javax.el</groupId>
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<artifactId>javax.el-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>org.glassfish</groupId>
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<artifactId>javax.el</artifactId>
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</dependency>
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<!-- Note that we need this dependency to send log4j logging requests to slf4j -->
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<dependency>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-to-slf4j</artifactId>
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</dependency>
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<!-- Hibernate Search -->
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<dependency>
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<groupId>org.hibernate.search</groupId>
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<artifactId>hibernate-search-mapper-orm</artifactId>
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<exclusions>
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<exclusion>
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-api</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
|
|
<dependency>
|
|
<groupId>org.elasticsearch.client</groupId>
|
|
<artifactId>elasticsearch-rest-high-level-client</artifactId>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>org.apache.logging.log4j</groupId>
|
|
<artifactId>log4j-api</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.hibernate.search</groupId>
|
|
<artifactId>hibernate-search-backend-elasticsearch</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.hibernate.search</groupId>
|
|
<artifactId>hibernate-search-backend-lucene</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.apache.lucene</groupId>
|
|
<artifactId>lucene-analyzers-phonetic</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.apache.lucene</groupId>
|
|
<artifactId>lucene-backward-codecs</artifactId>
|
|
</dependency>
|
|
<!-- Misc -->
|
|
<dependency>
|
|
<groupId>com.google.guava</groupId>
|
|
<artifactId>guava</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.apache.commons</groupId>
|
|
<artifactId>commons-collections4</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty</groupId>
|
|
<artifactId>jetty-servlets</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty</groupId>
|
|
<artifactId>jetty-servlet</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty</groupId>
|
|
<artifactId>jetty-server</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty</groupId>
|
|
<artifactId>jetty-util</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty</groupId>
|
|
<artifactId>jetty-webapp</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty.websocket</groupId>
|
|
<artifactId>websocket-api</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty.websocket</groupId>
|
|
<artifactId>websocket-client</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.eclipse.jetty.websocket</groupId>
|
|
<artifactId>websocket-server</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.springframework.boot</groupId>
|
|
<artifactId>spring-boot-test</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>com.icegreen</groupId>
|
|
<artifactId>greenmail</artifactId>
|
|
<scope>test</scope>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>com.sun.mail</groupId>
|
|
<artifactId>javax.mail</artifactId>
|
|
</exclusion>
|
|
<exclusion>
|
|
<groupId>junit</groupId>
|
|
<artifactId>junit</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>com.icegreen</groupId>
|
|
<artifactId>greenmail-spring</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.hamcrest</groupId>
|
|
<artifactId>hamcrest</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.testcontainers</groupId>
|
|
<artifactId>testcontainers</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.testcontainers</groupId>
|
|
<artifactId>elasticsearch</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.testcontainers</groupId>
|
|
<artifactId>junit-jupiter</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.hl7.fhir.testcases</groupId>
|
|
<artifactId>fhir-test-cases</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>com.github.ben-manes.caffeine</groupId>
|
|
<artifactId>caffeine</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>com.google.guava</groupId>
|
|
<artifactId>guava-testlib</artifactId>
|
|
<scope>test</scope>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>junit</groupId>
|
|
<artifactId>junit</artifactId>
|
|
</exclusion>
|
|
</exclusions>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.jetbrains</groupId>
|
|
<artifactId>annotations</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.mortbay.jetty</groupId>
|
|
<artifactId>servlet-api</artifactId>
|
|
<version>2.5-20081211</version>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
</dependencies>
|
|
|
|
|
|
<properties>
|
|
<jackson.version>2.7.1</jackson.version>
|
|
</properties>
|
|
|
|
<build>
|
|
<pluginManagement>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-site-plugin</artifactId>
|
|
<configuration>
|
|
<skipDeploy>true</skipDeploy>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</pluginManagement>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-failsafe-plugin</artifactId>
|
|
<version>2.22.2</version>
|
|
<configuration>
|
|
<redirectTestOutputToFile>true</redirectTestOutputToFile>
|
|
<forkCount>1</forkCount>
|
|
<reuseForks>false</reuseForks>
|
|
<runOrder>alphabetical</runOrder>
|
|
<includes>
|
|
<include>**/*IT.java</include>
|
|
</includes>
|
|
</configuration>
|
|
<executions>
|
|
<execution>
|
|
<goals>
|
|
<goal>integration-test</goal>
|
|
<goal>verify</goal>
|
|
</goals>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>de.jpdigital</groupId>
|
|
<artifactId>hibernate54-ddl-maven-plugin</artifactId>
|
|
<configuration>
|
|
<dialects>
|
|
<param>h2</param>
|
|
<param>derby_10_7</param>
|
|
<param>postgresql92</param>
|
|
<param>mysql57</param>
|
|
<param>mariadb</param>
|
|
<param>oracle12c</param>
|
|
<param>sqlserver2012</param>
|
|
</dialects>
|
|
<outputDirectory>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database</outputDirectory>
|
|
<packages>
|
|
<param>ca.uhn.fhir.jpa.entity</param>
|
|
<param>ca.uhn.fhir.jpa.model.entity</param>
|
|
</packages>
|
|
</configuration>
|
|
<executions>
|
|
<execution>
|
|
<phase>process-classes</phase>
|
|
<goals>
|
|
<goal>gen-ddl</goal>
|
|
</goals>
|
|
</execution>
|
|
</executions>
|
|
<dependencies>
|
|
<!--
|
|
These have been added as explicit dependencies
|
|
as JDK9 no longer includes them by default
|
|
-->
|
|
<dependency>
|
|
<groupId>org.glassfish.jaxb</groupId>
|
|
<artifactId>jaxb-runtime</artifactId>
|
|
<version>${jaxb_runtime_version}</version>
|
|
</dependency>
|
|
<!--<dependency>-->
|
|
<!--<groupId>com.sun.xml.bind</groupId>-->
|
|
<!--<artifactId>jaxb-core</artifactId>-->
|
|
<!--<version>${jaxb_core_version}</version>-->
|
|
<!--</dependency>-->
|
|
<!--<dependency>-->
|
|
<!--<groupId>com.sun.xml.bind</groupId>-->
|
|
<!--<artifactId>jaxb-impl</artifactId>-->
|
|
<!--<version>${jaxb_core_version}</version>-->
|
|
<!--</dependency>-->
|
|
</dependencies>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.jacoco</groupId>
|
|
<artifactId>jacoco-maven-plugin</artifactId>
|
|
<configuration>
|
|
<dumpOnExit>true</dumpOnExit>
|
|
</configuration>
|
|
<executions>
|
|
<execution>
|
|
<id>default-prepare-agent</id>
|
|
<goals>
|
|
<goal>prepare-agent</goal>
|
|
</goals>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-surefire-plugin</artifactId>
|
|
<configuration>
|
|
<runOrder>alphabetical</runOrder>
|
|
<argLine>@{argLine} ${surefire_jvm_args}</argLine>
|
|
<forkCount>0.6C</forkCount>
|
|
<excludes>*StressTest*</excludes>
|
|
</configuration>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-tinder-plugin</artifactId>
|
|
<version>${project.version}</version>
|
|
<executions>
|
|
<execution>
|
|
<id>build_dstu2</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>dstu2</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.dstu2</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu2.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames/>
|
|
<excludeResourceNames>
|
|
<!-- <excludeResourceName>OperationDefinition</excludeResourceName> <excludeResourceName>OperationOutcome</excludeResourceName> -->
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_dstu3</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>dstu3</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.dstu3</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu3.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_r4</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>r4</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.r4</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_r5</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>r5</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.r5</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r5.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
</executions>
|
|
|
|
<dependencies>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-dstu2</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-dstu3</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-r4</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
</dependencies>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.codehaus.mojo</groupId>
|
|
<artifactId>build-helper-maven-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<id>add-source</id>
|
|
<phase>generate-sources</phase>
|
|
<goals>
|
|
<goal>add-source</goal>
|
|
</goals>
|
|
<configuration>
|
|
<sources>
|
|
<source>target/generated-sources/tinder</source>
|
|
</sources>
|
|
</configuration>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
</plugins>
|
|
<resources>
|
|
<resource>
|
|
<directory>${project.basedir}/src/main/resources</directory>
|
|
</resource>
|
|
<resource>
|
|
<directory>${project.basedir}/target/generated-resources/tinder</directory>
|
|
</resource>
|
|
</resources>
|
|
</build>
|
|
|
|
<reporting>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-jxr-plugin</artifactId>
|
|
</plugin>
|
|
</plugins>
|
|
</reporting>
|
|
|
|
<profiles>
|
|
<profile>
|
|
<id>NOPARALLEL</id>
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-surefire-plugin</artifactId>
|
|
<configuration>
|
|
<forkCount>1</forkCount>
|
|
<excludes>
|
|
<exclude>**/stresstest/*</exclude>
|
|
</excludes>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
<profile>
|
|
<id>CI</id>
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-surefire-plugin</artifactId>
|
|
<configuration>
|
|
<forkCount>1</forkCount>
|
|
<runOrder>alphabetical</runOrder>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
<profile>
|
|
<!--
|
|
This profile is used on the Travis CI server because the full test suite
|
|
runs for over 45 minutes on Travis, and Travis kills it.. So we don't execute
|
|
all of the tests there.
|
|
|
|
This seems like it must be an issue with Travis's environment, since AppVeyor
|
|
can run the full build in much less time, but I don't know how to fix it
|
|
yet..
|
|
-->
|
|
<id>REDUCED_JPA_TESTS</id>
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-surefire-plugin</artifactId>
|
|
<configuration>
|
|
<forkCount>2</forkCount>
|
|
<reuseForks>true</reuseForks>
|
|
<runOrder>alphabetical</runOrder>
|
|
<redirectTestOutputToFile>true</redirectTestOutputToFile>
|
|
<excludes>
|
|
<exclude>**/*Dstu2*</exclude>
|
|
<exclude>**/*Dstu3*</exclude>
|
|
<exclude>**/stresstest/*</exclude>
|
|
</excludes>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
</profiles>
|
|
|
|
</project>
|