mirror of
https://github.com/hapifhir/hapi-fhir.git
synced 2025-02-20 11:55:17 +00:00
* version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * Rename file to force IT mode * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * documentation update (#5154) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * Fix hsql jdbc driver deps (#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (#5170) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * _source search parameter modifiers for Subscription matching (#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * Removal of meta tags during updates do not trigger subscription (#5181) * Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Issue 5173 get gateway everything doesnt return all patients (#5174) * Failing test * Also set offset and count in base DAO override * Changelog * Fix for specific case where count has been set in parameters * spotless * Improve checks --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Do not 500 and continue IG ingestion when different IGs try to save different ValueSets with colliding FHIR IDs (#5175) * First commit with failing unit test and small tweaks. * Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing. * Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl. * Revert PackageResourceParsingSvc to release branch baseline. * Accept code reviewer suggestion to change changelog description. Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Fix link * Remove target slf4j version * dont use new API for a bit (#5191) * Return DropIdGeneratorTask from the Builder to permit clients to mutate the (#5193) DropIdGeneratorTask. * Dqm performance bug update and provider loader fix (#5180) * update tests, move properties, update operation loader * update wip * remove test * fixing tests, adding config * update config and provider loader * fix bundles * fix cache settings on tests * version bump and change log * version bump * fix formatting * CVE-2022-45868 * wip cve change * cve h2 add back in --------- Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> * bulkExportReuse with POST and GET (#5161) * string manipulation * Code to ensure bulkExportReuse works with POST and GET requests * Added formatting changes * Fixed tests that were not working * Formatting * Code clean up * fixing test failures * fixing test failures * Removed arrOfParams to now utilize ObjectMapper * Removing stack trace and adding an exception * Fixed test issue * formatting * formatting * Resolving code review comments * Reduce size of subscription max results (#5194) * Reduce MAX_SUBSCRIPTION_RESULTS to 10000 * Add changelog * 5037 goldenresource remains when target resource deleted (#5038) * draft test and fix * remove unused fields * remove unused fields * remove unused fields * draft test + solution for possible match case * combine sql statement + more error checking * add test case for possible duplicate * add config for autodeleting grs * refactoring, adding support for mongo, docs * refactoring + fixing mongo queries * add changelogs * fix both way link removal * clean up test comments * rename method * remove unnecessary bean * merge master/resolve conflicts * mvn spotless * address comment * changes to avoid version bumping * spotless * change error code --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * dont use new API for a bit (#5190) * licenses * wip * Fix API usage * wip * Version bump --------- Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com>
456 lines
14 KiB
XML
456 lines
14 KiB
XML
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.9.3-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<artifactId>hapi-fhir-validation</artifactId>
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<packaging>bundle</packaging>
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<name>HAPI FHIR - Validation</name>
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<dependencies>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-base</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-converter</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-caching-api</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-caching-caffeine</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>org.hl7.fhir.validation</artifactId>
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<version>${fhir_core_version}</version>
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<exclusions>
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<exclusion>
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<groupId>info.cqframework</groupId>
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<artifactId>elm</artifactId>
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</exclusion>
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<exclusion>
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<groupId>info.cqframework</groupId>
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<artifactId>cql-to-elm</artifactId>
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</exclusion>
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<exclusion>
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<groupId>info.cqframework</groupId>
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<artifactId>quick</artifactId>
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</exclusion>
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<exclusion>
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<groupId>info.cqframework</groupId>
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<artifactId>qdm</artifactId>
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</exclusion>
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<exclusion>
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<groupId>info.cqframework</groupId>
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<artifactId>cql</artifactId>
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</exclusion>
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<exclusion>
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<groupId>info.cqframework</groupId>
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<artifactId>model</artifactId>
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</exclusion>
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<exclusion>
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<groupId>io.javalin</groupId>
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<artifactId>javalin</artifactId>
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</exclusion>
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<exclusion>
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<groupId>junit</groupId>
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<artifactId>junit</artifactId>
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</exclusion>
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<exclusion>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-collections4</artifactId>
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</exclusion>
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<exclusion>
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<groupId>xpp3</groupId>
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<artifactId>xpp3</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<!-- These two dependencies replaces the version of xpp3 that's bundled with Ucum with one that's Java 9+ compatible -->
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<dependency>
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<groupId>org.codelibs</groupId>
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<artifactId>xpp3</artifactId>
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<version>1.1.4c.0</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>org.hl7.fhir.utilities</artifactId>
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<version>${fhir_core_version}</version>
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</dependency>
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<dependency>
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<groupId>org.fhir</groupId>
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<artifactId>ucum</artifactId>
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<exclusions>
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<exclusion>
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<groupId>xpp3</groupId>
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<artifactId>xpp3</artifactId>
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</exclusion>
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<exclusion>
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<groupId>junit</groupId>
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<artifactId>junit</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>com.github.ben-manes.caffeine</groupId>
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<artifactId>caffeine</artifactId>
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</dependency>
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<dependency>
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<groupId>com.google.code.findbugs</groupId>
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<artifactId>jsr305</artifactId>
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</dependency>
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<!--
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Note: As of HAPI FHIR 5.0.0 we now use Jackson for JSON parsing, but the
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validator still uses GSON so it is a dependency here
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-->
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<dependency>
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<groupId>com.google.code.gson</groupId>
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<artifactId>gson</artifactId>
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</dependency>
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<!--
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Optional dependencies from RI codebase
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-->
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<!--
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<dependency>
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<groupId>es.nitaur.markdown</groupId>
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<artifactId>txtmark</artifactId>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>org.antlr</groupId>
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<artifactId>ST4</artifactId>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>xpp3</groupId>
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<artifactId>xpp3</artifactId>
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<optional>true</optional>
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</dependency>
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-->
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<!--
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Optional dependencies on the various versions of FHIR
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-->
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu2.1</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu3</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r4</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r4</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r4b</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r4b</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<!-- The validator and snapshot generators require R5 structures independent of which
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version is being validated -->
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r5</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r5</artifactId>
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<version>${project.version}</version>
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<optional>true</optional>
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</dependency>
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<!-- Test Deps -->
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<dependency>
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<groupId>com.fasterxml.woodstox</groupId>
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<artifactId>woodstox-core</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server</artifactId>
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<version>${project.version}</version>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-client</artifactId>
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<version>${project.version}</version>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>ch.qos.logback</groupId>
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<artifactId>logback-classic</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>javax.servlet</groupId>
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<artifactId>javax.servlet-api</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>com.google.guava</groupId>
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<artifactId>guava</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlets</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-servlet</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-server</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-util</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-webapp</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.eclipse.jetty</groupId>
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<artifactId>jetty-http</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-test-utilities</artifactId>
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<version>${project.version}</version>
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<scope>test</scope>
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</dependency>
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<dependency>
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<artifactId>commons-lang</artifactId>
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<groupId>commons-lang</groupId>
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<version>2.5</version>
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<scope>test</scope>
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</dependency>
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<!-- Dependencies for Schematron -->
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<dependency>
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<groupId>com.helger</groupId>
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<artifactId>ph-schematron</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>javax.activation</groupId>
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<artifactId>javax.activation-api</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>javax.xml.bind</groupId>
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<artifactId>jaxb-api</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.glassfish.jaxb</groupId>
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<artifactId>jaxb-runtime</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpclient</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-core</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.apache.jena</groupId>
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<artifactId>jena-core</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.apache.jena</groupId>
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<artifactId>jena-arq</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-model</artifactId>
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<version>${project.version}</version>
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<scope>test</scope>
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</dependency>
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</dependencies>
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<reporting>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-javadoc-plugin</artifactId>
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<configuration>
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<show>public</show>
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</configuration>
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</plugin>
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</plugins>
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</reporting>
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<build>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-surefire-plugin</artifactId>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.codehaus.mojo</groupId>
|
|
<artifactId>license-maven-plugin</artifactId>
|
|
<configuration>
|
|
<!-- Don't add UHN licenses to RI structures -->
|
|
<skipUpdateLicense>true</skipUpdateLicense>
|
|
</configuration>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-compiler-plugin</artifactId>
|
|
<configuration>
|
|
<fork>true</fork>
|
|
</configuration>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.apache.felix</groupId>
|
|
<artifactId>maven-bundle-plugin</artifactId>
|
|
<extensions>true</extensions>
|
|
<configuration>
|
|
<instructions>
|
|
<_nouses>true</_nouses>
|
|
<_removeheaders>Built-By, Include-Resource, Private-Package, Require-Capability</_removeheaders>
|
|
<!-- No need to disable normal OSGi class loading
|
|
<Fragment-Host>
|
|
ca.uhn.hapi.fhir.hapi-fhir-base
|
|
</Fragment-Host>
|
|
-->
|
|
<!-- add imports for validation resource packages -->
|
|
<Import-Package>
|
|
org.hl7.fhir.instance.model.profile;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.instance.model.schema;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.instance.model.valueset;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.dstu2016may.model.profile;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.dstu2016may.model.schema;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.dstu2016may.model.valueset;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.dstu3.model.extension;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.dstu3.model.profile;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.dstu3.model.schema;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.dstu3.model.valueset;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.r4.model.extension;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.r4.model.profile;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.r4.model.schema;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.r4.model.valueset;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.r5.model.extension;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.r5.model.profile;version="${project.version}";resolution:=optional,
|
|
org.hl7.fhir.r5.model.valueset;version="${project.version}";resolution:=optional,
|
|
*
|
|
</Import-Package>
|
|
</instructions>
|
|
</configuration>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
|
|
<profiles>
|
|
<profile>
|
|
<id>CI</id>
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.codehaus.mojo</groupId>
|
|
<artifactId>animal-sniffer-maven-plugin</artifactId>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
</profiles>
|
|
</project>
|